Experiment set4IT007 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Sodium Chlorite 1.25 mM

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_3638 +0.8 1.6 Predicted integral membrane protein (DUF2282) compare
Ga0059261_2076 +0.8 2.1 hypothetical protein compare
Ga0059261_1756 +0.8 2.6 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes compare
Ga0059261_1811 +0.7 2.3 ATP:cob(I)alamin adenosyltransferase compare
Ga0059261_1860 +0.7 1.5 Transposase compare
Ga0059261_3022 +0.6 3.2 MerT mercuric transport protein compare
Ga0059261_2708 +0.6 2.3 hypothetical protein compare
Ga0059261_2009 +0.6 4.7 cytochrome c oxidase, subunit II compare
Ga0059261_2618 +0.6 1.9 Protein of unknown function (DUF2721) compare
Ga0059261_2063 +0.5 2.5 Flagellar biosynthesis protein, FliO compare
Ga0059261_1652 +0.5 0.9 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_1169 +0.5 2.1 hypothetical protein compare
Ga0059261_2368 +0.5 1.1 Phage baseplate assembly protein W compare
Ga0059261_0073 +0.5 2.6 hypothetical protein compare
Ga0059261_2973 +0.5 2.7 hypothetical protein compare
Ga0059261_3755 +0.5 1.3 Protein of unknown function (DUF2798) compare
Ga0059261_0208 +0.5 2.1 Response regulator receiver domain compare
Ga0059261_1928 +0.5 2.3 Predicted permeases compare
Ga0059261_0880 +0.5 3.1 Tetratricopeptide repeat compare
Ga0059261_3604 +0.5 1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_1757 +0.4 2.6 Protein of unknown function (DUF4007) compare
Ga0059261_3507 +0.4 3.6 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain compare
Ga0059261_3926 +0.4 3.8 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) compare
Ga0059261_1759 +0.4 1.6 Phosphoadenosine phosphosulfate reductase family compare
Ga0059261_1951 +0.4 2.1 NADPH-glutathione reductase (EC 1.8.1.7) compare
Ga0059261_2143 +0.4 2.2 Zn-dependent proteases compare
Ga0059261_3862 +0.4 2.2 Multidrug resistance efflux pump compare
Ga0059261_3107 +0.4 2.5 EPS-associated transcriptional regulator, MarR family compare
Ga0059261_3494 +0.4 3.9 Glutamine synthetase adenylyltransferase compare
Ga0059261_0980 +0.4 2.9 polyhydroxyalkanoate synthesis repressor PhaR compare
Ga0059261_2978 +0.4 1.8 Transcriptional regulators compare
Ga0059261_1772 +0.4 1.4 MobA/MobL family compare
Ga0059261_1349 +0.4 1.4 hypothetical protein compare
Ga0059261_2448 +0.4 0.9 DNA protecting protein DprA compare
Ga0059261_1265 +0.4 1.5 hypothetical protein compare
Ga0059261_1373 +0.4 2.7 pyrimidine 5'-nucleotidase compare
Ga0059261_2351 +0.4 1.1 hypothetical protein compare
Ga0059261_3928 +0.4 2.0 Predicted thioesterase compare
Ga0059261_3602 +0.4 1.4 Glutaredoxin, GrxC family compare
Ga0059261_3871 +0.4 1.2 formate dehydrogenase family accessory protein FdhD compare
Ga0059261_1092 +0.4 1.1 flagellar motor switch protein FliN compare
Ga0059261_3833 +0.4 1.0 hypothetical protein compare
Ga0059261_3056 +0.4 1.5 Protein of unknown function (DUF2958) compare
Ga0059261_2715 +0.4 1.5 hypothetical protein compare
Ga0059261_2531 +0.4 1.4 conserved hypothetical integral membrane protein compare
Ga0059261_3579 +0.3 1.4 hypothetical protein compare
Ga0059261_2342 +0.3 1.6 hypothetical protein compare
Ga0059261_2795 +0.3 1.9 Predicted metal-dependent hydrolase of the TIM-barrel fold compare
Ga0059261_0062 +0.3 1.1 hypothetical protein compare
Ga0059261_2892 +0.3 1.4 hypothetical protein compare
Ga0059261_3762 +0.3 1.8 Uncharacterized conserved protein compare
Ga0059261_0848 +0.3 2.1 transcriptional regulator, TetR family compare
Ga0059261_0685 +0.3 0.9 pyruvate kinase compare
Ga0059261_1881 +0.3 1.7 Predicted membrane protein compare
Ga0059261_3759 +0.3 1.3 hypothetical protein compare
Ga0059261_3581 +0.3 2.1 Alpha/beta hydrolase family compare
Ga0059261_2415 +0.3 2.7 Phytoene/squalene synthetase compare
Ga0059261_3996 +0.3 2.5 arginine and ornithine succinyltransferase subunits compare
Ga0059261_0220 +0.3 2.4 L-serine dehydratase, iron-sulfur-dependent, single chain form compare
Ga0059261_3345 +0.3 0.9 TlyA family rRNA methyltransferase/putative hemolysin compare
Ga0059261_3434 +0.3 2.4 Predicted ATPase compare
Ga0059261_1261 +0.3 0.6 hypothetical protein compare
Ga0059261_0201 +0.3 2.4 Na+/H+-dicarboxylate symporters compare
Ga0059261_0911 +0.3 1.2 Domain of unknown function (DUF3597) compare
Ga0059261_1163 +0.3 1.0 Copper chaperone compare
Ga0059261_1844 +0.3 1.6 O-6-methylguanine DNA methyltransferase compare
Ga0059261_2086 +0.3 0.6 SAF-like compare
Ga0059261_0929 +0.3 1.6 anthranilate phosphoribosyltransferase compare
Ga0059261_1952 +0.3 2.1 Cupin domain compare
Ga0059261_2018 +0.3 2.5 hypothetical protein compare
Ga0059261_3707 +0.3 2.1 Predicted DNA alkylation repair enzyme compare
Ga0059261_0420 +0.3 1.4 FecR family protein compare
Ga0059261_0891 +0.3 1.1 hypothetical protein compare
Ga0059261_1970 +0.3 2.0 Bacterial aa3 type cytochrome c oxidase subunit IV compare
Ga0059261_2352 +0.3 1.2 hypothetical protein compare
Ga0059261_1886 +0.3 1.9 phenazine biosynthesis protein PhzF family compare
Ga0059261_3752 +0.3 0.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_1929 +0.3 1.5 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_2623 +0.3 1.9 Glycerol kinase compare
Ga0059261_0412 +0.3 0.7 DNA-binding HTH domain-containing proteins compare
Ga0059261_3872 +0.3 1.2 Outer membrane protein compare
Ga0059261_2320 +0.3 1.6 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily compare
Ga0059261_1920 +0.3 2.0 amidohydrolase, PncC family compare
Ga0059261_1286 +0.3 1.5 phasin family protein compare
Ga0059261_2416 +0.3 1.8 TIGR00730 family protein compare
Ga0059261_2768 +0.3 0.7 hypothetical protein compare
Ga0059261_2972 +0.3 2.4 transcriptional regulator, LacI family compare
Ga0059261_4184 +0.3 1.3 exosortase A system-associated hydrolase 1 compare
Ga0059261_3838 +0.3 1.3 Hemerythrin HHE cation binding domain compare
Ga0059261_0738 +0.3 1.2 Predicted transcriptional regulators compare
Ga0059261_0057 +0.3 2.5 Glycosyltransferase compare
Ga0059261_0072 +0.3 1.2 ATPases involved in chromosome partitioning compare
Ga0059261_2077 +0.3 1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_3262 +0.3 1.6 Predicted permeases compare
Ga0059261_0288 +0.3 1.8 Methyltransferase domain compare
Ga0059261_3915 +0.3 1.2 hypothetical protein compare
Ga0059261_1448 +0.3 1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_0975 +0.3 1.7 Flp pilus assembly protein, ATPase CpaF compare
Ga0059261_0451 +0.3 0.8 hypothetical protein compare
Ga0059261_3798 +0.3 1.6 diguanylate cyclase (GGDEF) domain compare
Ga0059261_1064 +0.3 0.8 Uncharacterized conserved protein compare
Ga0059261_2862 +0.3 1.9 Protein of unknown function (DUF2889) compare
Ga0059261_4105 +0.3 1.9 CDP-glucose 4,6-dehydratase compare
Ga0059261_1610 +0.3 1.7 CBS domain/Transporter associated domain compare
Ga0059261_2369 +0.3 1.6 phage baseplate assembly protein V compare
Ga0059261_3624 +0.3 1.5 hypothetical protein compare
Ga0059261_1707 +0.3 1.2 hypothetical protein compare
Ga0059261_1089 +0.3 1.4 Flagellar hook-length control protein compare
Ga0059261_0578 +0.3 1.8 Major Facilitator Superfamily compare
Ga0059261_3545 +0.3 0.9 hypothetical protein compare
Ga0059261_0827 +0.3 0.9 hypothetical protein compare
Ga0059261_3451 +0.3 0.6 hypothetical protein compare
Ga0059261_1217 +0.3 1.1 MobA/MobL family compare
Ga0059261_1303 +0.3 1.1 hypothetical protein compare
Ga0059261_1115 +0.3 0.5 Chemotaxis protein; stimulates methylation of MCP proteins compare
Ga0059261_1161 +0.3 1.3 Cu(I)-responsive transcriptional regulator compare
Ga0059261_2094 +0.3 1.7 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Ga0059261_2349 +0.3 1.3 hypothetical protein compare
Ga0059261_3682 +0.3 1.6 hypothetical protein compare
Ga0059261_1171 +0.3 1.2 Uncharacterized conserved protein compare
Ga0059261_0014 +0.3 1.5 phosphopyruvate hydratase compare
Ga0059261_1197 +0.3 1.0 hypothetical protein compare
Ga0059261_1725 +0.3 1.6 hypothetical protein compare
Ga0059261_2613 +0.3 1.7 AraC-type DNA-binding domain-containing proteins compare
Ga0059261_1653 +0.3 1.7 Uncharacterized conserved protein compare
Ga0059261_0829 +0.2 1.6 Transcriptional regulators compare
Ga0059261_2017 +0.2 1.9 Glycosyltransferase compare
Ga0059261_2847 +0.2 1.7 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_1208 +0.2 1.2 hypothetical protein compare
Ga0059261_3975 +0.2 1.4 Predicted ATPase/kinase involved in NAD metabolism compare
Ga0059261_1724 +0.2 0.9 hypothetical protein compare
Ga0059261_0038 +0.2 1.1 Transcriptional regulators compare
Ga0059261_2008 +0.2 2.2 cytochrome c oxidase, subunit I compare
Ga0059261_0780 +0.2 1.7 transcriptional regulator, LuxR family compare
Ga0059261_2461 +0.2 1.4 hypothetical protein compare
Ga0059261_2830 +0.2 0.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_0411 +0.2 0.8 Uncharacterized conserved protein compare
Ga0059261_2680 +0.2 0.4 hypothetical protein compare
Ga0059261_2583 +0.2 1.2 Uncharacterized conserved protein (DUF2285) compare
Ga0059261_0733 +0.2 0.8 Cell division protein ZapA compare
Ga0059261_3631 +0.2 1.3 hypothetical protein compare
Ga0059261_2632 +0.2 1.1 FAD binding domain compare
Ga0059261_3686 +0.2 1.7 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
Ga0059261_3411 +0.2 1.4 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_0047 +0.2 1.4 Predicted aminopeptidases compare
Ga0059261_1041 +0.2 1.3 transcriptional regulator, LysR family compare
Ga0059261_3144 +0.2 0.8 Transcriptional regulator compare
Ga0059261_1461 +0.2 1.5 Metal-dependent hydrolase compare
Ga0059261_3165 +0.2 1.4 PEP phosphonomutase and related enzymes compare
Ga0059261_0770 +0.2 0.5 hypothetical protein compare
Ga0059261_0035 +0.2 0.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_1263 +0.2 0.8 hypothetical protein compare
Ga0059261_0609 +0.2 1.1 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_0034 +0.2 1.2 Putative threonine efflux protein compare
Ga0059261_2856 +0.2 0.7 Acyl-CoA dehydrogenases compare
Ga0059261_4042 +0.2 1.9 sulfate adenylyltransferase, small subunit compare
Ga0059261_2987 +0.2 0.5 hypothetical protein compare
Ga0059261_3303 +0.2 1.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Ga0059261_0426 +0.2 1.7 hypothetical protein compare
Ga0059261_2993 +0.2 1.3 hypothetical protein compare
Ga0059261_2934 +0.2 1.3 hypothetical protein compare
Ga0059261_3685 +0.2 1.5 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_2930 +0.2 1.2 Predicted Na+-dependent transporter compare
Ga0059261_3583 +0.2 1.8 hypothetical protein compare
Ga0059261_4058 +0.2 1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_2022 +0.2 2.0 Peptidase family M49 compare
Ga0059261_0207 +0.2 1.1 Predicted phosphoribosyltransferases compare
Ga0059261_0921 +0.2 0.6 hypothetical protein compare
Ga0059261_1555 +0.2 1.2 hypothetical protein compare
Ga0059261_0862 +0.2 1.8 Arabinose efflux permease compare
Ga0059261_0586 +0.2 1.0 hypothetical protein compare
Ga0059261_4053 +0.2 0.8 hypothetical protein compare
Ga0059261_1516 +0.2 1.4 Glutathione S-transferase compare
Ga0059261_2183 +0.2 1.5 Uncharacterized conserved protein compare
Ga0059261_0272 +0.2 0.8 Uncharacterized small protein compare
Ga0059261_0390 +0.2 0.5 Ribbon-helix-helix protein, copG family compare
Ga0059261_1595 +0.2 1.9 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_1577 +0.2 1.8 L-glutamine and L-histidine transporter (from data) compare
Ga0059261_1410 +0.2 1.0 Fructose-2,6-bisphosphatase compare
Ga0059261_0110 +0.2 1.7 Glutamate dehydrogenase/leucine dehydrogenase compare
Ga0059261_2528 +0.2 1.1 Uncharacterized conserved protein compare
Ga0059261_1389 +0.2 1.5 Mechanosensitive ion channel compare
Ga0059261_0976 +0.2 1.2 Aspartyl protease compare
Ga0059261_3293 +0.2 1.4 hypothetical protein compare
Ga0059261_3063 +0.2 1.8 hypothetical protein compare
Ga0059261_1716 +0.2 0.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_0064 +0.2 1.3 Domain of unknown function (DUF4112) compare
Ga0059261_3829 +0.2 1.4 PAS domain S-box compare
Ga0059261_4189 +0.2 1.0 hypothetical protein compare
Ga0059261_1531 +0.2 1.0 hypothetical protein compare
Ga0059261_1894 +0.2 1.0 D-xylose 1-dehydrogenase (EC 1.1.1.175) (from data) compare
Ga0059261_1540 +0.2 1.2 hypothetical protein compare
Ga0059261_0025 +0.2 1.4 hypothetical protein compare
Ga0059261_4080 +0.2 0.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Ga0059261_3574 +0.2 1.2 hypothetical protein compare
Ga0059261_1719 +0.2 1.6 Flagellar biosynthesis pathway, component FliQ compare
Ga0059261_2570 +0.2 0.6 Type IV secretory pathway, TrbD component compare
Ga0059261_1079 +0.2 1.3 Chemotaxis protein histidine kinase and related kinases compare
Ga0059261_2365 +0.2 0.5 Mu-like prophage FluMu protein gp41 compare
Ga0059261_0590 +0.2 1.6 Selenocysteine lyase compare


Specific Phenotypes

For 4 genes in this experiment

For stress Sodium Chlorite in Sphingomonas koreensis DSMZ 15582

For stress Sodium Chlorite across organisms