Experiment set4IT007 for Caulobacter crescentus NA1000

Compare to:

PYE with Sodium nitrite 5 mM

200 most detrimental genes:

  gene name fitness t score description  
CCNA_03281 +5.7 47.8 AsnC-family transcriptional regulator compare
CCNA_01059 +4.9 40.0 S-layer protein rsaA compare
CCNA_01324 +4.8 20.2 LSU ribosomal protein L30P compare
CCNA_00699 +4.8 27.3 LSU ribosomal protein L28P compare
CCNA_01712 +4.7 35.4 CopY/TcrY family transcriptional repressor compare
CCNA_03064 +4.6 36.4 PadR-family transcriptional regulator compare
CCNA_02075 +4.5 4.3 peptidoglycan binding endopeptidase DipM compare
CCNA_00161 +4.5 38.0 hypothetical protein compare
CCNA_02980 +4.5 29.4 tryptophan 2,3-dioxygenase compare
CCNA_02957 +4.5 12.6 ArsR-family transcriptional regulator compare
CCNA_01979 +4.5 28.0 LexA repressor compare
CCNA_02103 +4.4 24.9 hypothetical protein compare
CCNA_03287 +4.4 25.6 PadR-family transcriptional regulator compare
CCNA_03280 +4.4 36.9 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_00162 +4.3 22.0 hypothetical protein compare
CCNA_03252 +4.3 23.2 CopY/TcrY-family transcriptional regulator compare
CCNA_03043 +4.2 16.6 type IV pilin protein pilA compare
CCNA_00962 +4.2 26.4 MarR-family transcriptional regulator compare
CCNA_01242 +4.1 23.8 amino acid permease compare
CCNA_00939 +4.1 15.6 MarR-family transcriptional regulator compare
CCNA_03271 +4.1 32.0 methionine gamma-lyase compare
CCNA_01058 +4.1 23.6 helix-turn-helix transcriptional regulator compare
CCNA_01526 +4.1 18.4 flagellar biosynthesis regulatory protein flaF compare
CCNA_01751 +4.1 12.7 aminodeoxychorismate lyase compare
CCNA_03479 +4.1 24.6 MarR-family transcriptional regulator compare
CCNA_02000 +4.1 4.5 SSU ribosomal protein S2P compare
CCNA_01094 +4.1 12.9 hypothetical protein compare
CCNA_00518 +4.0 25.0 LSU ribosomal protein L25P compare
CCNA_00756 +4.0 6.7 hypothetical protein compare
CCNA_02328 +3.9 3.3 cell cycle regulatory protein GcrA compare
CCNA_R0037 +3.9 8.5 tRNA-Glu compare
CCNA_03612 +3.9 30.7 HTH XRE-family transcriptional regulator compare
CCNA_02663 +3.9 9.8 DnaK suppressor protein DksA compare
CCNA_01060 +3.9 18.9 type I protein secretion ATP-binding protein RsaD compare
CCNA_00769 +3.9 17.1 TetR family transcriptional regulator compare
CCNA_01361 +3.9 17.1 PepSY superfamily protein compare
CCNA_03379 +3.8 10.8 Cro/CI family transcriptional regulator compare
CCNA_00954 +3.8 27.1 AAA-family response regulator flbD compare
CCNA_01815 +3.8 27.2 nitrogen assimilation regulatory protein NtrC compare
CCNA_02591 +3.8 15.7 glutaredoxin compare
CCNA_02910 +3.8 31.7 TonB-dependent receptor compare
CCNA_03989 +3.7 30.2 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_00924 +3.7 18.0 MarR/EmrR family transcriptional regulator compare
CCNA_02732 +3.7 5.9 hypothetical protein compare
CCNA_03384 +3.7 9.6 LSU ribosomal protein L31P compare
CCNA_02448 +3.7 13.4 hypothetical protein compare
CCNA_03805 +3.7 23.6 PadR-family transcriptional regulator compare
CCNA_02339 +3.7 20.5 methyltransferase compare
CCNA_02644 +3.6 12.1 cell division protein FtsL compare
CCNA_03012 +3.6 21.4 peroxiredoxin compare
CCNA_01525 +3.6 21.5 flagellar biosynthesis repressor flbT compare
CCNA_00950 +3.6 23.9 flagellar M-ring protein FliF compare
CCNA_02225 +3.6 18.1 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_02416 +3.6 23.2 DNA-binding protein HU compare
CCNA_03289 +3.6 10.4 HicB-family RNA-binding protein compare
CCNA_03129 +3.6 19.4 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_03420 +3.6 13.0 hypothetical protein compare
CCNA_03062 +3.6 21.3 cell wall hydrolase family protein compare
CCNA_03519 +3.5 12.2 PadR-family transcriptional regulator compare
CCNA_02419 +3.5 13.4 TonB1 protein compare
CCNA_03325 +3.5 15.3 hypothetical protein compare
CCNA_02575 +3.5 12.3 hypothetical protein compare
CCNA_01730 +3.4 19.0 amidophosphoribosyltransferase compare
CCNA_00527 +3.4 20.5 hypothetical protein compare
CCNA_01061 +3.4 15.4 type I secretion adaptor protein RsaE compare
CCNA_01573 +3.4 14.5 ArsR-family transcriptional regulator compare
CCNA_02447 +3.4 13.8 PspA/IM30 family regulatory protein compare
CCNA_00846 +3.4 28.8 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_00521 +3.4 5.6 antitoxin protein compare
CCNA_01186 +3.4 17.7 hypothetical protein compare
CCNA_01814 +3.4 24.4 nitrogen regulation protein ntrB compare
CCNA_02025 +3.4 12.4 hypothetical protein compare
CCNA_01840 +3.4 25.6 MerR-family transcriptional regulator compare
CCNA_00354 +3.3 17.0 NlpC/P60 CHAP domain amidase protein compare
CCNA_02021 +3.3 11.3 hypothetical protein compare
CCNA_02073 +3.3 11.3 cupin domain transcriptional regulator compare
CCNA_00944 +3.3 17.5 flagellar hook length determination protein compare
CCNA_00505 +3.3 20.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_00497 +3.3 20.7 putative rhamnosyl transferase compare
CCNA_02619 +3.3 19.3 stomatin/prohibitin-related protein compare
CCNA_01968 +3.3 10.2 pentapeptide repeats containing protein compare
CCNA_01790 +3.2 13.4 protein translocase subunit secG compare
CCNA_03108 +3.2 26.1 TonB-dependent outer membrane receptor compare
CCNA_03689 +3.2 23.6 alanine dehydrogenase compare
CCNA_01181 +3.2 16.1 hypothetical protein compare
CCNA_00999 +3.2 16.1 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_00210 +3.2 26.7 TonB-dependent receptor compare
CCNA_03372 +3.2 14.4 bacterioferritin-associated ferredoxin compare
CCNA_02242 +3.2 15.8 PHB granule-associated protein, phasin2 compare
CCNA_03123 +3.2 16.1 ArsR-family transcriptional regulator compare
CCNA_00684 +3.2 8.7 anti-sigma factor, ChrR-family compare
CCNA_00149 +3.2 6.9 Cro/CI-family transcriptional regulator compare
CCNA_00296 +3.2 18.6 phosphate regulon response regulator PhoB compare
CCNA_01433 +3.1 15.3 integration host factor alpha-subunit compare
CCNA_02133 +3.1 10.7 glucokinase compare
CCNA_01624 +3.1 7.0 orotate phosphoribosyltransferase compare
CCNA_01942 +3.1 16.7 Rrf2 family protein compare
CCNA_00834 +3.1 13.5 flagellin FljM compare
CCNA_00945 +3.1 16.6 chemotaxis protein MotD compare
CCNA_02037 +3.1 16.6 ATP-dependent endopeptidase Lon compare
CCNA_00947 +3.1 22.3 flagellar hook protein FlgE compare
CCNA_00013 +3.1 25.2 protein-PII uridylyltransferase compare
CCNA_02617 +3.1 24.3 histidinol-phosphate aminotransferase compare
CCNA_01913 +3.0 20.3 MarR-family transcriptional regulator compare
CCNA_00163 +3.0 19.8 exopolysaccharide transport family protein compare
CCNA_01063 +3.0 14.6 UDP-perosamine 4-acetyl transferase compare
CCNA_03951 +3.0 11.2 hypothetical protein compare
CCNA_00920 +3.0 8.4 hypothetical protein compare
CCNA_01931 +3.0 22.5 TetR-family transcriptional regulator compare
CCNA_02387 +3.0 19.2 glutathione reductase compare
CCNA_00215 +3.0 15.9 SapC surface layer protein compare
CCNA_03089 +3.0 18.3 hypothetical protein compare
CCNA_02324 +3.0 14.1 heat shock protein 33 hsp33 compare
CCNA_03464 +2.9 7.9 glycine cleavage system H protein compare
CCNA_00032 +2.9 14.9 antitoxin protein VapB compare
CCNA_00952 +2.9 14.9 flagellar assembly protein FlbE/FliH compare
CCNA_02646 +2.9 5.9 cell division protein MraZ compare
CCNA_03961 +2.9 9.5 hypothetical protein compare
CCNA_00951 +2.9 16.4 flagellar motor switch protein FliG compare
CCNA_02127 +2.9 17.9 oxacillin resistance-associated protein fmtC compare
CCNA_02287 +2.9 17.9 TetR-family transcriptional regulator compare
CCNA_00031 +2.9 17.3 toxin protein VapC compare
CCNA_02567 +2.9 19.7 sensory transduction histidine kinase pleC compare
CCNA_00438 +2.9 11.6 hypothetical protein compare
CCNA_03136 +2.9 10.4 flagellar export protein FliJ compare
CCNA_00441 +2.9 16.5 chemotaxis receiver domain protein cheYI compare
CCNA_02026 +2.9 8.7 hypothetical protein compare
CCNA_00803 +2.9 11.5 chemotaxis protein cheW compare
CCNA_00447 +2.8 15.1 chemotaxis protein cheD compare
CCNA_00400 +2.8 16.5 MarR/EmrR-family transcriptional regulator compare
CCNA_01923 +2.8 15.8 ATP-dependent RNA helicase compare
CCNA_02576 +2.8 16.8 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_03215 +2.8 18.6 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_01528 +2.8 16.1 flagellin fljK compare
CCNA_00895 +2.8 10.2 hypothetical protein compare
CCNA_00440 +2.8 7.2 STAS domain protein compare
CCNA_01583 +2.8 5.8 phosphate-binding protein compare
CCNA_02616 +2.8 20.5 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_01690 +2.8 7.1 MAPEG family membrane protein compare
CCNA_01742 +2.8 18.3 hypothetical protein compare
CCNA_01453 +2.8 10.1 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_01684 +2.8 15.2 phenylalanine-4-hydroxylase compare
CCNA_01393 +2.8 16.5 soluble lytic murein transglycosylase compare
CCNA_02243 +2.7 16.0 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_02030 +2.7 6.5 hypothetical protein compare
CCNA_03722 +2.7 23.8 glutamate synthase (NADPH) large chain GltB compare
CCNA_01235 +2.7 12.5 AcrR-family transcriptional regulator compare
CCNA_03391 +2.7 13.9 Cro/CI family transcriptional regulator compare
CCNA_03863 +2.7 9.4 hypothetical protein compare
CCNA_02289 +2.7 22.7 MarR/EmrR family transcriptional regulator compare
CCNA_00079 +2.7 10.2 MerR-family transcriptional regulator compare
CCNA_00375 +2.7 11.1 hypothetical protein compare
CCNA_03557 +2.7 11.0 hypothetical protein compare
CCNA_02081 +2.7 11.3 Sec-independent protein translocase protein tatB compare
CCNA_01763 +2.7 15.1 multifunctional aminopeptidase compare
CCNA_03959 +2.7 3.0 hypothetical protein compare
CCNA_02976 +2.7 12.4 MCP-signal associated domain protein compare
CCNA_00324 +2.7 4.1 ExbD-family protein compare
CCNA_03132 +2.7 8.8 transcriptional regulator, antitoxin protein higA compare
CCNA_01008 +2.7 20.0 urocanate hydratase compare
CCNA_01801 +2.7 13.2 hypothetical protein compare
CCNA_03808 +2.6 16.0 organic solvent resistance transport system Ttg2C protein compare
CCNA_00168 +2.6 19.7 polysaccharide export protein compare
CCNA_00946 +2.6 13.8 Basal-body rod modification protein FlgD compare
CCNA_02367 +2.6 17.5 CelR-family transcriptional regulator compare
CCNA_01655 +2.6 12.4 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_03105 +2.6 10.7 DnaJ domain protein compare
CCNA_01780 +2.6 16.0 exopolyphosphatase compare
CCNA_00322 +2.6 18.7 hypothetical protein compare
CCNA_01926 +2.6 11.3 GGDEF diguanylate cyclase DgcB compare
CCNA_01553 +2.6 12.5 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase compare
CCNA_00028 +2.6 10.0 TonB-dependent receptor compare
CCNA_00735 +2.6 3.5 beta-barrel assembly machine (BAM) protein BamF compare
CCNA_02379 +2.6 14.4 hypothetical protein compare
CCNA_01678 +2.6 13.0 arginine N-succinyltransferase, beta chain compare
CCNA_01505 +2.5 6.7 hypothetical protein compare
CCNA_00446 +2.5 9.4 chemotaxis receiver domain protein cheYII compare
CCNA_03371 +2.5 14.2 bacterioferritin compare
CCNA_01086 +2.5 15.5 GTP-binding protein lepA compare
CCNA_02151 +2.5 6.6 exodeoxyribonuclease VII small subunit compare
CCNA_03513 +2.5 10.5 cytochrome c oxidase subunit III coxC compare
CCNA_00443 +2.5 12.1 chemotaxis protein cheW compare
CCNA_02475 +2.5 17.3 transcriptional regulator vanR compare
CCNA_R0054 +2.5 3.4 tRNA-Gly compare
CCNA_01062 +2.5 17.3 GDP-mannose 4,6 dehydratase compare
CCNA_00164 +2.5 16.5 O-antigen polymerase compare
CCNA_00444 +2.5 15.7 chemotaxis protein methyltransferase compare
CCNA_00471 +2.5 14.0 GDP-L-fucose synthase compare
CCNA_02004 +2.4 5.5 SOS-induced inhibitor of cell division SidA compare
CCNA_00885 +2.4 13.2 MazE-like antitoxin protein compare
CCNA_01739 +2.4 12.6 LSU ribosomal protein L9P compare
CCNA_02942 +2.4 6.5 nucleoside-diphosphate-sugar epimerase compare
CCNA_01804 +2.4 13.2 glutathione peroxidase compare
CCNA_00299 +2.4 13.6 phosphoribosylamine--glycine ligase compare
CCNA_00392 +2.4 15.8 dihydroorotase compare
CCNA_00726 +2.4 17.4 acyl-CoA dehydrogenase compare
CCNA_01339 +2.4 10.7 ArsR-family transcriptional regulator compare
CCNA_00807 +2.4 6.2 ribonuclease P protein component compare
CCNA_01020 +2.4 14.5 LacI-family transcriptional regulator compare
CCNA_01033 +2.4 13.5 FecR family protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Sodium nitrite in Caulobacter crescentus NA1000

For stress Sodium nitrite across organisms