Experiment set4IT007 for Ralstonia sp. UNC404CL21Col

Compare to:

rhizosphere EcoFAB sample 2; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -7.2 -5.0 NUDIX domain-containing protein compare
ABZR87_RS02160 -6.8 -4.7 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS02655 -6.7 -9.3 anti-sigma factor compare
ABZR87_RS08630 -6.4 -4.4 dihydroorotase compare
ABZR87_RS14505 -6.1 -5.9 phosphoribosylanthranilate isomerase compare
ABZR87_RS22920 -5.9 -4.1 phosphogluconate dehydratase compare
ABZR87_RS01225 -5.8 -4.0 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS05305 -5.4 -12.1 TetR family transcriptional regulator compare
ABZR87_RS16270 -5.2 -1.8 cold-shock protein compare
ABZR87_RS17650 -5.1 -8.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS13790 -5.0 -9.1 chorismate synthase compare
ABZR87_RS09465 -5.0 -6.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02550 -4.9 -3.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS17145 -4.8 -14.6 AMP nucleosidase compare
ABZR87_RS21815 -4.8 -1.7 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS14115 -4.7 -3.6 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS14500 -4.6 -12.8 tryptophan synthase subunit beta compare
ABZR87_RS04975 -4.4 -3.0 peptide deformylase compare
ABZR87_RS10175 -4.3 -7.8 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS00435 -4.3 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS14490 -4.2 -10.8 tryptophan synthase subunit alpha compare
ABZR87_RS10170 -4.2 -5.9 RseA family anti-sigma factor compare
ABZR87_RS02640 -4.1 -12.0 diaminopimelate decarboxylase compare
ABZR87_RS07380 -4.1 -17.3 FAD/FMN-binding oxidoreductase compare
ABZR87_RS08795 -4.1 -4.0 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS02590 -4.1 -11.7 3-dehydroquinate synthase compare
ABZR87_RS02385 -4.0 -6.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS07005 -4.0 -2.8 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS21285 -4.0 -2.6 TetR/AcrR family transcriptional regulator compare
ABZR87_RS00865 -4.0 -2.0 VTT domain-containing protein compare
ABZR87_RS04865 -3.9 -2.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS08990 -3.9 -7.7 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS07035 -3.9 -2.7 RNase adapter RapZ compare
ABZR87_RS14965 -3.8 -4.6 DUF3619 family protein compare
ABZR87_RS07050 -3.8 -2.2 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS16170 -3.8 -2.6 argininosuccinate lyase compare
ABZR87_RS14540 -3.8 -7.2 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS07665 -3.8 -11.0 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS03850 -3.7 -5.1 ureidoglycolate lyase compare
ABZR87_RS12785 -3.7 -3.6 endopeptidase La compare
ABZR87_RS05100 -3.6 -5.3 RNA polymerase-binding protein DksA compare
ABZR87_RS08985 -3.6 -14.2 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS08695 -3.6 -17.0 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS10195 -3.5 -3.6 signal peptidase I compare
ABZR87_RS01745 -3.5 -4.5 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS14535 -3.5 -5.3 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02440 -3.4 -10.2 twin-arginine translocase subunit TatC compare
ABZR87_RS11010 -3.4 -2.6 oxidative damage protection protein compare
ABZR87_RS02545 -3.4 -8.1 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS20555 -3.3 -3.8 helix-turn-helix transcriptional regulator compare
ABZR87_RS12800 -3.3 -4.6 trigger factor compare
ABZR87_RS04880 -3.2 -8.2 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS16960 -3.2 -3.8 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS08970 -3.2 -10.1 protein TolQ compare
ABZR87_RS08640 -3.2 -4.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS10980 -3.2 -1.5 tRNA-Leu compare
ABZR87_RS12780 -3.1 -1.5 HU family DNA-binding protein compare
ABZR87_RS13475 -3.1 -9.0 PAS domain S-box protein compare
ABZR87_RS02850 -3.1 -3.0 elongation factor Tu compare
ABZR87_RS02595 -3.0 -10.9 shikimate kinase compare
ABZR87_RS02445 -3.0 -4.5 Sec-independent protein translocase protein TatB compare
ABZR87_RS13645 -2.9 -1.4 hypothetical protein compare
ABZR87_RS13250 -2.9 -1.9 phosphoserine phosphatase SerB compare
ABZR87_RS22690 -2.9 -3.2 XRE family transcriptional regulator compare
ABZR87_RS14605 -2.9 -11.7 aconitate hydratase AcnA compare
ABZR87_RS04945 -2.9 -3.8 DUF4390 domain-containing protein compare
ABZR87_RS04940 -2.9 -6.9 PAS domain-containing sensor histidine kinase compare
ABZR87_RS13285 -2.9 -7.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS11940 -2.9 -2.0 SsrA-binding protein SmpB compare
ABZR87_RS00360 -2.8 -3.1 acyl-CoA desaturase compare
ABZR87_RS02375 -2.8 -9.7 cytochrome c1 compare
ABZR87_RS02535 -2.8 -5.6 phospholipid-binding protein MlaC compare
ABZR87_RS00325 -2.8 -2.6 peptidylprolyl isomerase compare
ABZR87_RS01645 -2.7 -4.0 type II 3-dehydroquinate dehydratase compare
ABZR87_RS04720 -2.7 -9.0 IclR family transcriptional regulator compare
ABZR87_RS11245 -2.7 -4.9 translational GTPase TypA compare
ABZR87_RS01035 -2.7 -4.4 histidine utilization repressor compare
ABZR87_RS02555 -2.7 -7.3 ABC transporter ATP-binding protein compare
ABZR87_RS09615 -2.7 -1.5 50S ribosomal protein L19 compare
ABZR87_RS08625 -2.6 -1.8 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS21950 -2.6 -5.8 hypothetical protein compare
ABZR87_RS03565 -2.6 -8.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS09515 -2.6 -2.6 cysteine synthase CysM compare
ABZR87_RS01615 -2.5 -1.1 RNB domain-containing ribonuclease compare
ABZR87_RS07730 -2.5 -2.4 lysophospholipid acyltransferase family protein compare
ABZR87_RS02570 -2.5 -15.5 glutamate synthase-related protein compare
ABZR87_RS16735 -2.5 -10.5 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS01255 -2.5 -10.1 LysR substrate-binding domain-containing protein compare
ABZR87_RS14530 -2.5 -6.3 3-isopropylmalate dehydrogenase compare
ABZR87_RS02380 -2.4 -9.1 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS05635 -2.3 -12.9 muropeptide transporter compare
ABZR87_RS08980 -2.3 -2.8 cell envelope integrity protein TolA compare
ABZR87_RS16730 -2.3 -6.3 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS16125 -2.3 -4.6 heme biosynthesis protein HemY compare
ABZR87_RS08070 -2.3 -2.3 pyruvate kinase compare
ABZR87_RS08700 -2.3 -9.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS07055 -2.3 -8.0 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS11790 -2.3 -2.2 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS12790 -2.2 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS06705 -2.2 -9.6 glutamate--cysteine ligase compare
ABZR87_RS09935 -2.2 -3.4 amino acid aminotransferase compare
ABZR87_RS12965 -2.2 -1.9 tail protein X compare
ABZR87_RS06845 -2.2 -7.9 heme o synthase compare
ABZR87_RS15955 -2.2 -2.4 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
ABZR87_RS07510 -2.2 -4.5 LysR family transcriptional regulator compare
ABZR87_RS04125 -2.2 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS06400 -2.2 -4.6 response regulator transcription factor compare
ABZR87_RS17310 -2.2 -3.8 PadR family transcriptional regulator compare
ABZR87_RS12795 -2.1 -4.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS02155 -2.1 -5.2 anthranilate phosphoribosyltransferase compare
ABZR87_RS20875 -2.1 -4.3 LysR family transcriptional regulator compare
ABZR87_RS07705 -2.1 -2.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS16055 -2.1 -6.2 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS01885 -2.0 -4.3 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS22485 -2.0 -3.4 FAD-dependent oxidoreductase compare
ABZR87_RS00340 -2.0 -2.3 50S ribosomal protein L33 compare
ABZR87_RS02540 -2.0 -6.8 VacJ family lipoprotein compare
ABZR87_RS05590 -2.0 -1.4 orotate phosphoribosyltransferase compare
ABZR87_RS15705 -2.0 -3.8 UvrD-helicase domain-containing protein compare
ABZR87_RS13770 -2.0 -8.0 CoA transferase subunit A compare
ABZR87_RS09625 -2.0 -6.3 CobD/CbiB family protein compare
ABZR87_RS14190 -2.0 -7.6 DUF2589 domain-containing protein compare
ABZR87_RS07675 -1.9 -7.3 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS14510 -1.9 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS02140 -1.9 -11.0 anthranilate synthase component I compare
ABZR87_RS09445 -1.9 -5.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS13300 -1.9 -6.6 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS06715 -1.8 -4.3 PTS sugar transporter subunit IIA compare
ABZR87_RS07360 -1.8 -7.7 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS00835 -1.8 -1.3 argininosuccinate synthase compare
ABZR87_RS06840 -1.8 -6.4 COX15/CtaA family protein compare
ABZR87_RS03330 -1.8 -4.7 MarR family transcriptional regulator compare
ABZR87_RS06645 -1.8 -1.2 TlpA disulfide reductase family protein compare
ABZR87_RS22300 -1.8 -1.2 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS15680 -1.8 -6.4 DNA polymerase I compare
ABZR87_RS01245 -1.7 -4.0 Dps family protein compare
ABZR87_RS05350 -1.7 -1.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS01450 -1.7 -2.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS00440 -1.7 -5.8 ATP-dependent Clp protease adapter ClpS compare
ABZR87_RS03865 -1.7 -6.7 GntR family transcriptional regulator compare
ABZR87_RS17730 -1.7 -4.0 GntR family transcriptional regulator compare
ABZR87_RS11435 -1.7 -3.2 Mth938-like domain-containing protein compare
ABZR87_RS10565 -1.7 -1.2 cupin domain-containing protein compare
ABZR87_RS06350 -1.7 -6.3 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS15095 -1.7 -6.9 allantoinase PuuE compare
ABZR87_RS01240 -1.7 -6.1 catalase/peroxidase HPI compare
ABZR87_RS06250 -1.7 -2.4 hydroxymethylglutaryl-CoA lyase compare
ABZR87_RS23095 -1.6 -1.2 MarR family transcriptional regulator compare
ABZR87_RS22970 -1.6 -7.6 cystathionine gamma-synthase family protein compare
ABZR87_RS16820 -1.6 -4.3 TetR/AcrR family transcriptional regulator compare
ABZR87_RS11440 -1.6 -3.9 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS07620 -1.6 -3.1 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS10610 -1.6 -1.1 inositol monophosphatase family protein compare
ABZR87_RS10400 -1.6 -1.8 hypothetical protein compare
ABZR87_RS23265 -1.6 -1.6 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS02075 -1.6 -2.1 23S ribosomal RNA compare
ABZR87_RS12385 -1.6 -1.6 AraC family transcriptional regulator compare
ABZR87_RS17185 -1.6 -5.3 amidohydrolase compare
ABZR87_RS02565 -1.5 -3.3 glutamate synthase subunit beta compare
ABZR87_RS00300 -1.5 -4.9 ABC transporter ATP-binding protein compare
ABZR87_RS22520 -1.5 -1.9 ABATE domain-containing protein compare
ABZR87_RS02220 -1.5 -5.6 redox-regulated ATPase YchF compare
ABZR87_RS06710 -1.5 -8.7 glutathione synthase compare
ABZR87_RS10550 -1.5 -1.1 outer membrane protein assembly factor BamC compare
ABZR87_RS01270 -1.5 -5.0 ATP-dependent DNA helicase RecG compare
ABZR87_RS09450 -1.5 -3.6 prephenate dehydratase compare
ABZR87_RS07470 -1.5 -4.3 TetR/AcrR family transcriptional regulator compare
ABZR87_RS14330 -1.5 -1.0 hypothetical protein compare
ABZR87_RS23125 -1.5 -6.7 XRE family transcriptional regulator compare
ABZR87_RS05200 -1.5 -8.5 homoserine O-acetyltransferase compare
ABZR87_RS05645 -1.4 -2.5 SDR family oxidoreductase compare
ABZR87_RS20440 -1.4 -1.1 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS00295 -1.4 -1.8 ABC transporter ATP-binding protein compare
ABZR87_RS06480 -1.4 -6.4 patatin-like phospholipase family protein compare
ABZR87_RS17235 -1.4 -3.2 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS21035 -1.4 -5.8 lipocalin family protein compare
ABZR87_RS01640 -1.4 -2.6 TlpA disulfide reductase family protein compare
ABZR87_RS10230 -1.4 -3.1 beta-N-acetylhexosaminidase compare
ABZR87_RS07625 -1.4 -1.8 Holliday junction branch migration protein RuvA compare
ABZR87_RS00970 -1.4 -1.2 molecular chaperone DnaJ compare
ABZR87_RS02630 -1.4 -4.3 iron donor protein CyaY compare
ABZR87_RS09710 -1.4 -1.9 tRNA-Arg compare
ABZR87_RS11015 -1.4 -2.5 amino-acid N-acetyltransferase compare
ABZR87_RS06280 -1.4 -4.6 carboxyl transferase domain-containing protein compare
ABZR87_RS04340 -1.4 -5.8 septum site-determining protein MinD compare
ABZR87_RS11195 -1.4 -5.2 pseudouridine synthase compare
ABZR87_RS01800 -1.4 -3.2 RNA pyrophosphohydrolase compare
ABZR87_RS10785 -1.4 -3.5 exodeoxyribonuclease V subunit beta compare
ABZR87_RS13495 -1.3 -3.4 exodeoxyribonuclease III compare
ABZR87_RS17910 -1.3 -5.2 IclR family transcriptional regulator compare
ABZR87_RS10190 -1.3 -4.3 translation elongation factor 4 compare
ABZR87_RS12950 -1.3 -4.5 phage major capsid protein, P2 family compare
ABZR87_RS07355 -1.3 -3.9 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS14420 -1.3 -3.8 heme-binding protein compare
ABZR87_RS13445 -1.3 -2.5 phasin family protein compare
ABZR87_RS21050 -1.3 -2.9 DUF1295 domain-containing protein compare
ABZR87_RS00580 -1.3 -2.5 hypothetical protein compare
ABZR87_RS01085 -1.3 -3.6 rhombosortase compare
ABZR87_RS20945 -1.3 -1.4 DNA-3-methyladenine glycosylase I compare
ABZR87_RS14575 -1.3 -2.6 GntR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment