Experiment set4IT007 for Ralstonia sp. UNC404CL21Col
rhizosphere EcoFAB sample 2; outgrowth in LB
Group: rhizosphereMedia:
Culturing: CL21_ML4, EcoFAB
By: Dawn Chiniquy on 4-Apr-19
Specific Phenotypes
For 4 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Arginine and Ornithine Degradation | 1 |
| Bacterial Cell Division | 1 |
| Bacterial Cytoskeleton | 1 |
| Dimethylarginine metabolism | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-ornithine biosynthesis II | 3 | 3 | 1 |
| L-arginine degradation I (arginase pathway) | 3 | 3 | 1 |
| L-proline biosynthesis III (from L-ornithine) | 3 | 3 | 1 |
| L-arginine degradation VI (arginase 2 pathway) | 4 | 4 | 1 |
| L-arginine degradation XIII (reductive Stickland reaction) | 5 | 4 | 1 |
| L-Nδ-acetylornithine biosynthesis | 7 | 5 | 1 |
| L-citrulline biosynthesis | 8 | 7 | 1 |
| superpathway of L-citrulline metabolism | 12 | 9 | 1 |