Experiment set4IT006 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with Sodium perchlorate monohydrate 75 mM

200 most detrimental genes:

  gene name fitness t score description  
AO356_00920 +1.7 5.0 cold-shock protein compare
AO356_01050 +1.7 12.9 hypothetical protein compare
AO356_03885 +1.5 10.9 beta-ketoacyl-ACP synthase compare
AO356_00880 +1.4 4.6 integration host factor subunit alpha compare
AO356_16035 +1.4 12.1 hypothetical protein compare
AO356_01045 +1.4 7.5 hypothetical protein compare
AO356_03855 +1.3 10.3 AAA family ATPase compare
AO356_04570 +1.3 6.8 RNA polymerase subunit sigma compare
AO356_05100 +1.2 9.8 long-chain fatty acid--CoA ligase compare
AO356_21465 +1.2 4.6 amidophosphoribosyltransferase compare
AO356_04870 +1.2 8.4 TetR family transcriptional regulator compare
AO356_17080 +1.2 8.2 stringent starvation protein A compare
AO356_23815 +1.2 6.1 amidase compare
AO356_20460 +1.1 4.0 hypothetical protein compare
AO356_28475 +1.1 3.0 hypothetical protein compare
AO356_00575 +1.1 2.7 SCP-2 family sterol carrier protein compare
AO356_09760 +1.1 4.6 glutaredoxin compare
AO356_10030 +1.1 7.4 Agmatine deiminase (EC 3.5.3.12) (from data) compare
AO356_03095 +1.1 5.2 protease HtpX compare
AO356_11420 +1.1 7.2 histidine kinase compare
AO356_02425 +1.0 7.0 cytochrome C oxidase Cbb3 compare
AO356_12885 +1.0 6.1 hypothetical protein compare
AO356_02875 +1.0 5.1 peroxiredoxin compare
AO356_06690 +1.0 3.0 queuine tRNA-ribosyltransferase compare
AO356_04815 +1.0 2.2 hypothetical protein compare
AO356_21765 +1.0 2.1 GntR family transcriptional regulator compare
AO356_21275 +1.0 1.3 peptidase compare
AO356_06600 +0.9 6.1 pilus assembly protein PilW compare
AO356_00665 +0.9 2.7 IclR family transcriptional regulator compare
AO356_14295 +0.9 1.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_06650 +0.9 3.3 transcriptional regulator compare
AO356_02430 +0.9 4.0 cytochrome C oxidase Cbb3 compare
AO356_18780 +0.9 1.9 carbon storage regulator compare
AO356_03435 +0.9 3.0 integration host factor subunit beta compare
AO356_19115 +0.9 4.7 peptidase P60 compare
AO356_09555 +0.9 2.4 hypothetical protein compare
AO356_22310 +0.9 2.6 hypothetical protein compare
AO356_13145 +0.9 6.1 glutamine synthetase compare
AO356_13250 +0.8 5.5 dihydroxy-acid dehydratase compare
AO356_00935 +0.8 3.2 hypothetical protein compare
AO356_06360 +0.8 1.4 hypothetical protein compare
AO356_03780 +0.8 1.7 flagellar motor switch protein compare
AO356_12605 +0.8 6.2 FAD-dependent oxidoreductase compare
AO356_19090 +0.8 1.7 phosphoribosylaminoimidazole synthetase compare
AO356_24550 +0.8 1.3 hypothetical protein compare
AO356_06350 +0.8 3.5 hypothetical protein compare
AO356_05735 +0.8 1.4 hypothetical protein compare
AO356_09765 +0.8 2.3 sulfurtransferase compare
AO356_27405 +0.8 2.1 MarR family transcriptional regulator compare
AO356_18595 +0.8 3.6 TetR family transcriptional regulator compare
AO356_01630 +0.8 3.3 anti-sigma factor compare
AO356_27170 +0.8 1.7 XRE family transcriptional regulator compare
AO356_28710 +0.8 1.3 aldehyde dehydrogenase compare
AO356_08645 +0.8 3.4 hypothetical protein compare
AO356_25455 +0.8 2.0 transcriptional regulator compare
AO356_23420 +0.8 4.4 carboxynorspermidine decarboxylase compare
AO356_14820 +0.8 1.4 Isochorismatase compare
AO356_20830 +0.8 2.6 phosphoadenosine phosphosulfate reductase compare
AO356_08325 +0.8 2.0 predicted copper homeostasis protein (from data) compare
AO356_29115 +0.8 2.6 Vanillate O-demethylase oxidoreductase compare
AO356_03500 +0.8 3.2 3-oxoacyl-ACP reductase compare
AO356_02335 +0.8 3.1 hypothetical protein compare
AO356_15160 +0.8 2.0 hypothetical protein compare
AO356_04565 +0.7 4.3 RNA polymerase subunit sigma compare
AO356_01875 +0.7 1.2 Cro/Cl family transcriptional regulator compare
AO356_08330 +0.7 6.2 TonB-dependent receptor compare
AO356_16975 +0.7 4.3 cytochrome C oxidase compare
AO356_28895 +0.7 1.5 LysR family transcriptional regulator compare
AO356_17970 +0.7 6.1 porin compare
AO356_17560 +0.7 3.5 hypothetical protein compare
AO356_27190 +0.7 4.3 hypothetical protein compare
AO356_14285 +0.7 2.5 glycerol-3-phosphate acyltransferase compare
AO356_18065 +0.7 2.3 7-carboxy-7-deazaguanine synthase compare
AO356_13480 +0.7 2.1 pilus assembly protein PilG compare
AO356_07390 +0.7 0.9 polyribonucleotide nucleotidyltransferase compare
AO356_01570 +0.7 3.5 hydroxymethylglutaryl-CoA lyase compare
AO356_09835 +0.7 3.3 iron transporter compare
AO356_18150 +0.7 2.7 hypothetical protein compare
AO356_09455 +0.7 1.4 ATP-dependent protease subunit HslV compare
AO356_27220 +0.7 4.3 hypothetical protein compare
AO356_05550 +0.7 2.1 DNA base-flipping protein YbaZ compare
AO356_24405 +0.7 2.6 tRNA hydroxylase compare
AO356_02635 +0.7 2.3 pathogenicity island 1 effector protein compare
AO356_29655 +0.7 2.8 ABC transporter substrate-binding protein compare
AO356_02440 +0.7 4.1 cytochrome C oxidase Cbb3 compare
AO356_29610 +0.7 2.2 AraC family transcriptional regulator compare
AO356_12900 +0.7 2.4 exopolyphosphatase compare
AO356_10335 +0.7 3.6 hypothetical protein compare
AO356_00125 +0.6 1.4 hypothetical protein compare
AO356_18370 +0.6 2.2 NADH:quinone oxidoreductase compare
AO356_00570 +0.6 1.9 phosphoglycerate mutase compare
AO356_09520 +0.6 2.5 phosphoribosyl-AMP cyclohydrolase compare
AO356_08320 +0.6 1.7 copper resistance protein CopZ compare
AO356_16970 +0.6 4.0 cytochrome o ubiquinol oxidase subunit III compare
AO356_12235 +0.6 2.1 hypothetical protein compare
AO356_01170 +0.6 1.8 glycosyl transferase family 1 compare
AO356_26060 +0.6 1.5 fe2+ zn2+ uptake regulation protein compare
AO356_26395 +0.6 0.4 hypothetical protein compare
AO356_28845 +0.6 1.3 ferrichrome ABC transporter compare
AO356_01015 +0.6 1.5 peptidylprolyl isomerase compare
AO356_19255 +0.6 1.0 molecular chaperone compare
AO356_16170 +0.6 4.2 acetolactate synthase 3 catalytic subunit compare
AO356_28430 +0.6 1.7 hypothetical protein compare
AO356_28445 +0.6 1.0 decarboxylase compare
AO356_16435 +0.6 1.2 hypothetical protein compare
AO356_19265 +0.6 2.4 recombination-associated protein RdgC compare
AO356_28160 +0.6 1.1 hypothetical protein compare
AO356_28440 +0.6 0.9 galactose 1-dehydrogenase compare
AO356_03200 +0.6 3.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO356_26280 +0.6 1.8 RNA polymerase subunit sigma compare
AO356_02580 +0.6 1.7 GntR family transcriptional regulator compare
AO356_02275 +0.6 2.3 hypothetical protein compare
AO356_05440 +0.6 1.0 hypothetical protein compare
AO356_19935 +0.6 1.3 pilus assembly protein PilA compare
AO356_24150 +0.6 2.5 hypothetical protein compare
AO356_27300 +0.6 2.5 hypothetical protein compare
AO356_19810 +0.6 1.4 esterase compare
AO356_15705 +0.6 1.4 GntR family transcriptional regulator compare
AO356_01600 +0.6 2.4 Cro/Cl family transcriptional regulator compare
AO356_17035 +0.6 2.5 ATPase compare
AO356_05135 +0.6 1.3 aldehyde dehydrogenase compare
AO356_26005 +0.6 1.1 hypothetical protein compare
AO356_12715 +0.6 1.9 hypothetical protein compare
AO356_22680 +0.6 1.2 chemotaxis protein CheY compare
AO356_26875 +0.6 1.5 alcohol dehydrogenase compare
AO356_19465 +0.6 0.9 5-hydroxyisourate hydrolase [EC: 3.5.2.17] (from data) compare
AO356_25720 +0.6 1.3 polyamine ABC transporter permease compare
AO356_04580 +0.5 4.4 L-aspartate oxidase compare
AO356_01990 +0.5 1.8 phage tail protein compare
AO356_13685 +0.5 2.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_16175 +0.5 3.3 acetolactate synthase 3 regulatory subunit compare
AO356_21260 +0.5 0.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_27565 +0.5 2.2 RND transporter compare
AO356_08420 +0.5 3.0 phosphate starvation-inducible protein PsiF compare
AO356_12375 +0.5 4.0 histidine kinase compare
AO356_21430 +0.5 3.4 peptidoglycan-binding protein compare
AO356_03880 +0.5 3.2 flagellin compare
AO356_16395 +0.5 2.0 chemotaxis protein compare
AO356_01055 +0.5 2.8 GNAT family acetyltransferase compare
AO356_16960 +0.5 3.8 ubiquinol oxidase subunit II compare
AO356_08755 +0.5 1.1 aspartyl protease compare
AO356_13075 +0.5 3.3 adenylate cyclase compare
AO356_12580 +0.5 3.7 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
AO356_27185 +0.5 2.8 hypothetical protein compare
AO356_11340 +0.5 0.7 NADH-flavin reductase compare
AO356_03215 +0.5 4.1 hypothetical protein compare
AO356_06695 +0.5 2.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO356_06065 +0.5 1.4 ArsC family transcriptional regulator compare
AO356_26180 +0.5 1.3 hypothetical protein compare
AO356_20045 +0.5 2.0 ABC transporter compare
AO356_06530 +0.5 2.8 sugar ABC transporter ATPase compare
AO356_07730 +0.5 0.6 hypothetical protein compare
AO356_28255 +0.5 1.4 class III aminotransferase compare
AO356_29355 +0.5 0.8 hypothetical protein compare
AO356_27285 +0.5 1.6 hypothetical protein compare
AO356_28345 +0.5 1.3 TetR family transcriptional regulator compare
AO356_08705 +0.5 2.9 flagellar motor protein MotB compare
AO356_16450 +0.5 1.5 GTP-binding protein compare
AO356_01640 +0.5 2.1 Fe3+/spermidine/putrescine ABC transporter ATP-binding protein compare
AO356_10980 +0.5 3.0 rubredoxin compare
AO356_12985 +0.5 2.7 hypothetical protein compare
AO356_04310 +0.5 2.4 hypothetical protein compare
AO356_06685 +0.5 0.9 preprotein translocase subunit YajC compare
AO356_25170 +0.5 1.2 lipid carrier protein compare
AO356_17200 +0.5 3.5 histidine kinase compare
AO356_28860 +0.5 1.0 transcriptional regulator compare
AO356_14400 +0.5 1.8 polyamine ABC transporter permease compare
AO356_20300 +0.5 2.0 transcriptional regulator compare
AO356_09560 +0.5 3.5 glucosyltransferase MdoH compare
AO356_23090 +0.5 1.4 dihydropyrimidine dehydrogenase compare
AO356_09490 +0.5 1.4 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO356_29080 +0.5 0.8 ornithine cyclodeaminase compare
AO356_26485 +0.5 0.9 hypothetical protein compare
AO356_18435 +0.5 1.3 hypothetical protein compare
AO356_27195 +0.5 2.7 hypothetical protein compare
AO356_28905 +0.5 1.7 HxlR family transcriptional regulator compare
AO356_13475 +0.5 2.4 glutathione synthetase compare
AO356_08710 +0.5 3.5 flagellar motor stator protein MotA compare
AO356_25135 +0.5 1.8 iron-sulfur cluster repair di-iron protein compare
AO356_08215 +0.5 2.6 tRNA-dihydrouridine synthase B compare
AO356_26635 +0.5 1.2 hydrolase compare
AO356_09565 +0.5 2.4 glucan biosynthesis protein G compare
AO356_30265 +0.5 1.2 cupin compare
AO356_18155 +0.5 0.6 cold-shock protein compare
AO356_04795 +0.5 1.8 methanol dehydrogenase compare
AO356_29170 +0.5 1.3 nodulation protein NfeD compare
AO356_26915 +0.5 1.0 Fe-S oxidoreductase compare
AO356_15620 +0.5 2.2 (2Fe-2S)-binding protein compare
AO356_23425 +0.5 1.9 saccharopine dehydrogenase compare
AO356_26345 +0.5 1.8 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
AO356_27200 +0.5 1.3 hypothetical protein compare
AO356_23260 +0.5 2.5 cation:proton antiporter compare
AO356_04820 +0.5 2.5 amidase compare
AO356_26365 +0.5 1.9 acyl-CoA dehydrogenase compare
AO356_25755 +0.5 1.4 4-carboxymuconolactone decarboxylase compare
AO356_21115 +0.5 1.7 alpha/beta hydrolase compare
AO356_10910 +0.5 2.7 tryptophan synthase subunit alpha compare
AO356_16085 +0.5 1.9 MFS transporter compare
AO356_10245 +0.5 1.8 ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA compare
AO356_23325 +0.5 1.3 short-chain dehydrogenase compare


Specific Phenotypes

For 8 genes in this experiment

For stress Sodium perchlorate monohydrate in Pseudomonas fluorescens FW300-N2C3

For stress Sodium perchlorate monohydrate across organisms