Experiment set4IT006 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium nitrate nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS23920 -5.4 -2.8 septation protein A compare
PFLU_RS27640 -5.3 -2.1 alpha/beta fold hydrolase compare
PFLU_RS21360 -4.9 -1.9 MarR family transcriptional regulator compare
PFLU_RS07525 -4.8 -2.2 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS26565 -4.6 -1.8 rRNA maturation RNase YbeY compare
PFLU_RS17265 -4.5 -2.0 hypothetical protein compare
PFLU_RS30030 -4.4 -1.0 membrane protein compare
PFLU_RS17950 -4.3 -2.0 hypothetical protein compare
PFLU_RS02860 -4.1 -2.1 urease subunit beta compare
PFLU_RS29065 -4.1 -0.9 amino acid ABC transporter ATP-binding protein compare
PFLU_RS21240 -4.0 -1.6 hypothetical protein compare
PFLU_RS03555 -4.0 -0.9 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS19665 -4.0 -1.3 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS02790 -4.0 -1.6 TetR family transcriptional regulator compare
PFLU_RS01645 -3.9 -15.3 S41 family peptidase compare
PFLU_RS28645 -3.9 -14.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS29360 -3.9 -1.5 cytochrome c5 family protein compare
PFLU_RS13715 -3.8 -1.5 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS08760 -3.8 -2.5 phosphonate C-P lyase system protein PhnG compare
PFLU_RS16445 -3.8 -2.6 PIG-L family deacetylase compare
PFLU_RS07255 -3.8 -3.7 sulfurtransferase TusA family protein compare
PFLU_RS03645 -3.8 -13.0 tetratricopeptide repeat protein compare
PFLU_RS09500 -3.7 -1.2 hypothetical protein compare
PFLU_RS20955 -3.6 -1.9 DUF1028 domain-containing protein compare
PFLU_RS30345 -3.5 -2.1 DUF2559 family protein compare
PFLU_RS21215 -3.5 -1.1 YheU family protein compare
PFLU_RS22105 -3.5 -3.4 cysteine synthase CysM compare
PFLU_RS23070 -3.4 -1.1 50S ribosomal protein L32 compare
PFLU_RS02980 -3.4 -1.7 precorrin-8X methylmutase compare
PFLU_RS31840 -3.4 -1.1 hypothetical protein compare
PFLU_RS30160 -3.4 -2.3 ParB/RepB/Spo0J family partition protein compare
PFLU_RS26660 -3.3 -3.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS18725 -3.1 -1.2 alpha/beta hydrolase compare
PFLU_RS18705 -3.1 -3.2 hypothetical protein compare
PFLU_RS30630 -3.1 -1.0 hypothetical protein compare
PFLU_RS27365 -3.1 -7.9 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS24125 -3.0 -7.7 cold-shock protein compare
PFLU_RS09720 -3.0 -2.1 single-stranded DNA-binding protein compare
PFLU_RS00850 -3.0 -3.4 hypothetical protein compare
PFLU_RS12975 -3.0 -4.9 DUF934 domain-containing protein compare
PFLU_RS31740 -3.0 -3.3 hypothetical protein compare
PFLU_RS00190 -2.9 -2.2 DUF883 domain-containing protein compare
PFLU_RS00535 -2.9 -2.5 DUF1127 domain-containing protein compare
PFLU_RS04660 -2.8 -5.6 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS15830 -2.8 -2.4 His-Xaa-Ser system protein HxsD compare
PFLU_RS01900 -2.8 -7.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28695 -2.8 -6.0 phosphoglycerate dehydrogenase compare
PFLU_RS29875 -2.8 -12.9 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS23445 -2.8 -2.9 DUF1003 domain-containing protein compare
PFLU_RS18505 -2.8 -11.8 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS11490 -2.8 -3.0 ABC transporter ATP-binding protein compare
PFLU_RS29885 -2.8 -7.4 LysR family transcriptional regulator compare
PFLU_RS28965 -2.8 -9.9 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS29880 -2.7 -11.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS17080 -2.7 -2.9 FadR family transcriptional regulator compare
PFLU_RS22740 -2.7 -6.4 phosphoadenylyl-sulfate reductase compare
PFLU_RS26545 -2.7 -8.2 sel1 repeat family protein compare
PFLU_RS09055 -2.7 -1.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS12980 -2.6 -10.3 nitrite/sulfite reductase compare
PFLU_RS25735 -2.6 -8.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS14355 -2.6 -3.1 DUF2388 domain-containing protein compare
PFLU_RS24330 -2.6 -7.0 phosphogluconate dehydratase compare
PFLU_RS20870 -2.6 -2.8 hypothetical protein compare
PFLU_RS01620 -2.6 -8.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS14550 -2.6 -7.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS04945 -2.6 -2.7 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS02115 -2.6 -1.7 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS27580 -2.5 -1.8 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
PFLU_RS28265 -2.5 -2.1 malonate decarboxylase subunit delta compare
PFLU_RS26490 -2.5 -2.7 cation diffusion facilitator family transporter compare
PFLU_RS06680 -2.4 -3.3 hypothetical protein compare
PFLU_RS19590 -2.3 -3.6 pyridoxamine 5'-phosphate oxidase compare
PFLU_RS03665 -2.3 -6.1 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS03865 -2.3 -4.6 outer membrane protein assembly factor BamD compare
PFLU_RS01610 -2.3 -9.0 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS23305 -2.3 -8.9 arginine N-succinyltransferase compare
PFLU_RS03970 -2.3 -6.6 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25760 -2.3 -9.5 glucose-6-phosphate isomerase compare
PFLU_RS04070 -2.3 -5.3 peptide chain release factor 3 compare
PFLU_RS02490 -2.2 -8.0 phosphoserine phosphatase SerB compare
PFLU_RS03250 -2.2 -1.7 heavy-metal-associated domain-containing protein compare
PFLU_RS30165 -2.2 -8.8 ParA family protein compare
PFLU_RS06055 -2.2 -0.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS25755 -2.2 -4.1 pantoate--beta-alanine ligase compare
PFLU_RS01615 -2.2 -4.0 DUF2164 domain-containing protein compare
PFLU_RS28535 -2.1 -9.9 dihydroxy-acid dehydratase compare
PFLU_RS16510 -2.1 -1.8 thiol-disulfide oxidoreductase DCC family protein compare
PFLU_RS00415 -2.1 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS14995 -2.1 -1.4 response regulator transcription factor compare
PFLU_RS07275 -2.1 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS18420 -2.0 -1.3 hypothetical protein compare
PFLU_RS25225 -2.0 -6.6 disulfide bond formation protein B compare
PFLU_RS09495 -2.0 -2.1 helix-turn-helix transcriptional regulator compare
PFLU_RS31290 -2.0 -1.5 EamA family transporter compare
PFLU_RS25360 -2.0 -6.5 glutamate 5-kinase compare
PFLU_RS21060 -2.0 -2.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS01500 -2.0 -2.0 cell division protein FtsQ compare
PFLU_RS17815 -2.0 -1.8 response regulator compare
PFLU_RS21495 -2.0 -3.6 TlpA family protein disulfide reductase compare
PFLU_RS20540 -2.0 -7.1 phosphoribosylanthranilate isomerase compare
PFLU_RS10120 -2.0 -2.3 hypothetical protein compare
PFLU_RS14505 -2.0 -4.3 bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada compare
PFLU_RS25640 -1.9 -8.5 ketol-acid reductoisomerase compare
PFLU_RS28655 -1.9 -9.3 HAD family hydrolase compare
PFLU_RS01685 -1.9 -3.6 nitrogen regulation protein NR(I) compare
PFLU_RS29515 -1.9 -5.5 RidA family protein compare
PFLU_RS11105 -1.9 -2.5 hypothetical protein compare
PFLU_RS14305 -1.9 -1.5 sensor histidine kinase compare
PFLU_RS27630 -1.9 -3.6 dethiobiotin synthase compare
PFLU_RS15515 -1.9 -1.8 hypothetical protein compare
PFLU_RS28165 -1.9 -8.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS23725 -1.9 -7.4 glucose-6-phosphate dehydrogenase compare
PFLU_RS26735 -1.8 -5.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS30645 -1.8 -1.9 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS23585 -1.8 -5.4 GntP family permease compare
PFLU_RS28650 -1.8 -4.7 RNA pyrophosphohydrolase compare
PFLU_RS06265 -1.8 -11.0 [protein-PII] uridylyltransferase compare
PFLU_RS03770 -1.8 -6.8 sulfate adenylyltransferase subunit CysN compare
PFLU_RS05750 -1.8 -1.3 methionine--tRNA ligase compare
PFLU_RS18635 -1.8 -2.1 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS12710 -1.8 -2.8 AbrB family transcriptional regulator compare
PFLU_RS00870 -1.8 -1.2 hypothetical protein compare
PFLU_RS01285 -1.8 -1.0 HAMP domain-containing protein compare
PFLU_RS01625 -1.8 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS20510 -1.8 -7.6 O-succinylhomoserine sulfhydrylase compare
PFLU_RS26595 -1.7 -1.2 lipoprotein compare
PFLU_RS25730 -1.7 -9.8 PAS domain S-box protein compare
PFLU_RS21050 -1.7 -2.7 hypothetical protein compare
PFLU_RS22595 -1.7 -3.4 OmpA family protein compare
PFLU_RS23065 -1.7 -5.7 phosphate acyltransferase PlsX compare
PFLU_RS08615 -1.7 -1.9 YgdI/YgdR family lipoprotein compare
PFLU_RS29095 -1.7 -11.2 polyphosphate kinase 1 compare
PFLU_RS26770 -1.7 -7.1 DedA family protein compare
PFLU_RS06320 -1.7 -1.8 OmpH family outer membrane protein compare
PFLU_RS27440 -1.7 -4.9 nucleotidyltransferase family protein compare
PFLU_RS13750 -1.6 -0.8 hypothetical protein compare
PFLU_RS01960 -1.6 -1.0 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS23010 -1.6 -6.0 radical SAM protein compare
PFLU_RS01690 -1.6 -3.7 nitrogen regulation protein NR(II) compare
PFLU_RS08620 -1.6 -3.8 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS08735 -1.6 -0.8 histidine phosphatase family protein compare
PFLU_RS14045 -1.6 -2.3 hypothetical protein compare
PFLU_RS09670 -1.6 -1.5 integrating conjugative element protein compare
PFLU_RS21270 -1.6 -4.9 acireductone dioxygenase compare
PFLU_RS29275 -1.6 -4.1 DUF484 family protein compare
PFLU_RS30660 -1.6 -1.8 histidine phosphatase family protein compare
PFLU_RS19165 -1.6 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS22070 -1.6 -2.4 phosphoribosylglycinamide formyltransferase compare
PFLU_RS11525 -1.6 -3.2 GntR family transcriptional regulator compare
PFLU_RS24485 -1.6 -4.9 hypothetical protein compare
PFLU_RS25715 -1.6 -6.6 RNA polymerase-binding protein DksA compare
PFLU_RS04715 -1.6 -3.8 D-alanine--D-alanine ligase compare
PFLU_RS28195 -1.5 -7.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS27370 -1.5 -6.3 anthranilate phosphoribosyltransferase compare
PFLU_RS11930 -1.5 -1.3 biopolymer transporter ExbD compare
PFLU_RS28270 -1.5 -1.7 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS22580 -1.5 -5.7 NarK/NasA family nitrate transporter conserved
PFLU_RS28690 -1.5 -6.3 FAD-binding oxidoreductase compare
PFLU_RS24825 -1.5 -1.7 Fe-S cluster assembly protein IscX compare
PFLU_RS03960 -1.5 -1.4 tRNA-Thr compare
PFLU_RS09945 -1.5 -2.3 catalase family protein compare
PFLU_RS13950 -1.5 -2.1 hypothetical protein compare
PFLU_RS04470 -1.5 -6.1 histidinol dehydrogenase compare
PFLU_RS04780 -1.5 -1.8 hypothetical protein compare
PFLU_RS02150 -1.5 -3.1 acyl carrier protein compare
PFLU_RS07225 -1.5 -7.1 L-aspartate oxidase compare
PFLU_RS12675 -1.5 -2.2 DUF2946 domain-containing protein compare
PFLU_RS03765 -1.5 -5.0 sulfate adenylyltransferase subunit CysD compare
PFLU_RS00770 -1.5 -2.7 hypothetical protein compare
PFLU_RS18655 -1.5 -1.9 NADH-quinone oxidoreductase subunit J compare
PFLU_RS11830 -1.5 -1.5 hypothetical protein compare
PFLU_RS24090 -1.5 -2.5 Holliday junction branch migration protein RuvA compare
PFLU_RS01605 -1.4 -3.8 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS11820 -1.4 -2.9 hypothetical protein compare
PFLU_RS07090 -1.4 -2.7 cysteine-rich CWC family protein compare
PFLU_RS05250 -1.4 -3.3 elongation factor 4 compare
PFLU_RS22575 -1.4 -3.0 ANTAR domain-containing protein conserved
PFLU_RS16715 -1.4 -5.3 nitrite reductase large subunit conserved
PFLU_RS29550 -1.4 -4.5 ATP-dependent DNA helicase RecG compare
PFLU_RS24790 -1.4 -2.6 tetratricopeptide repeat protein compare
PFLU_RS24560 -1.4 -4.9 site-specific tyrosine recombinase XerD compare
PFLU_RS27650 -1.4 -6.1 biotin synthase BioB compare
PFLU_RS16390 -1.4 -1.2 DUF411 domain-containing protein compare
PFLU_RS31595 -1.4 -2.0 hypothetical protein compare
PFLU_RS28385 -1.4 -5.3 homoserine O-acetyltransferase compare
PFLU_RS18675 -1.4 -1.0 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS15220 -1.4 -2.2 hypothetical protein compare
PFLU_RS12660 -1.4 -3.7 hypothetical protein compare
PFLU_RS30865 -1.4 -2.3 transposase compare
PFLU_RS06650 -1.4 -1.2 DUF2288 domain-containing protein compare
PFLU_RS07810 -1.4 -7.0 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS20845 -1.4 -1.5 hypothetical protein compare
PFLU_RS20025 -1.4 -1.6 amino acid ABC transporter ATP-binding protein compare
PFLU_RS13180 -1.4 -2.1 hypothetical protein compare
PFLU_RS26640 -1.3 -6.8 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS31615 -1.3 -3.0 hypothetical protein compare
PFLU_RS29090 -1.3 -4.6 exopolyphosphatase compare
PFLU_RS15420 -1.3 -2.5 hypothetical protein compare
PFLU_RS25800 -1.3 -4.7 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS04430 -1.3 -4.9 ATP-binding cassette domain-containing protein compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For nitrogen source D-Glucose across organisms