Experiment set4IT006 for Methanococcus maripaludis S2

Compare to:

H2 deepwell vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS08720 -3.2 -2.0 4Fe-4S binding protein compare
MMP_RS08210 -3.2 -2.8 phosphatidylglycerophosphatase A compare
MMP_RS01005 -3.1 -1.5 riboflavin synthase compare
MMP_RS01175 -3.0 -6.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS07005 -3.0 -0.8 4Fe-4S binding protein compare
MMP_RS02240 -3.0 -4.7 methanogenesis marker 7 protein compare
MMP_RS00300 -3.0 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07845 -2.8 -3.5 LL-diaminopimelate aminotransferase compare
MMP_RS00695 -2.8 -1.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01020 -2.7 -1.2 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS04605 -2.7 -6.8 cobalt ECF transporter T component CbiQ compare
MMP_RS03315 -2.6 -1.7 ferrous iron transport protein A compare
MMP_RS01265 -2.6 -3.6 hypothetical protein compare
MMP_RS08715 -2.6 -2.4 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06355 -2.6 -2.8 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06730 -2.6 -2.7 phosphopantothenate/pantothenate synthetase compare
MMP_RS06350 -2.6 -9.5 HesA/MoeB/ThiF family protein compare
MMP_RS07630 -2.6 -1.6 ATP-binding cassette domain-containing protein compare
MMP_RS05515 -2.5 -7.8 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS03400 -2.5 -4.1 archease compare
MMP_RS06285 -2.4 -2.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS07635 -2.4 -8.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03015 -2.4 -11.7 GTP 3' 8-cyclase MoaA compare
MMP_RS02195 -2.4 -4.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS04780 -2.4 -3.5 ribonuclease P compare
MMP_RS06400 -2.3 -2.1 4Fe-4S binding protein compare
MMP_RS01830 -2.3 -1.9 tRNA-Val compare
MMP_RS08300 -2.3 -1.2 metal-sulfur cluster assembly factor compare
MMP_RS06130 -2.3 -5.0 peptidylprolyl isomerase compare
MMP_RS05250 -2.3 -1.4 NFYB/HAP3 family transcription factor subunit compare
MMP_RS04620 -2.3 -12.0 cobalt transporter CbiM compare
MMP_RS07755 -2.1 -1.3 DUF555 domain-containing protein compare
MMP_RS02900 -2.1 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS08440 -2.1 -3.5 cell division protein SepF compare
MMP_RS08745 -2.1 -6.5 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS08460 -2.1 -2.8 proteasome-activating nucleotidase compare
MMP_RS03025 -2.1 -7.0 molybdenum cofactor guanylyltransferase compare
MMP_RS08785 -2.1 -1.3 RNA-protein complex protein Nop10 compare
MMP_RS02800 -2.0 -8.1 nucleotidyltransferase domain-containing protein compare
MMP_RS02135 -2.0 -6.2 DUF5612 domain-containing protein compare
MMP_RS06625 -2.0 -2.6 DNA primase compare
MMP_RS06295 -2.0 -8.9 methanogenesis marker 14 protein compare
MMP_RS08790 -2.0 -2.5 translation initiation factor IF-2 subunit alpha compare
MMP_RS02345 -1.9 -3.4 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS04500 -1.9 -14.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS03600 -1.9 -2.0 triose-phosphate isomerase compare
MMP_RS04890 -1.9 -0.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS06120 -1.9 -2.1 UPF0147 family protein compare
MMP_RS01500 -1.9 -2.5 CBS domain-containing protein compare
MMP_RS01955 -1.9 -3.3 hypothetical protein compare
MMP_RS04775 -1.9 -4.5 adenosylhomocysteinase compare
MMP_RS04615 -1.8 -3.1 PDGLE domain-containing protein compare
MMP_RS04720 -1.8 -2.5 DedA family protein compare
MMP_RS02875 -1.8 -10.4 chorismate pyruvate-lyase family protein compare
MMP_RS09020 -1.8 -1.8 hypothetical protein compare
MMP_RS06925 -1.8 -3.0 ribonuclease VapC4 compare
MMP_RS03035 -1.8 -4.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS05920 -1.8 -0.7 50S ribosomal protein L37e compare
MMP_RS03445 -1.8 -1.1 methanogenesis marker 17 protein compare
MMP_RS01755 -1.8 -1.2 DUF2097 domain-containing protein compare
MMP_RS02355 -1.8 -3.4 30S ribosomal protein S27ae compare
MMP_RS06340 -1.8 -6.8 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS06885 -1.8 -2.5 50S ribosome-binding GTPase compare
MMP_RS06105 -1.8 -9.3 hydrogenase maturation peptidase HycI compare
MMP_RS08105 -1.7 -7.9 6-carboxyhexanoate--CoA ligase compare
MMP_RS01225 -1.7 -4.8 DUF5379 domain-containing protein compare
MMP_RS06370 -1.7 -5.9 biotin synthase BioB compare
MMP_RS00130 -1.7 -1.3 nickel-responsive transcriptional regulator NikR compare
MMP_RS01380 -1.7 -5.9 PHP domain-containing protein compare
MMP_RS07600 -1.7 -2.8 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS03700 -1.7 -6.8 sodium:proton antiporter compare
MMP_RS07380 -1.7 -2.3 transcription elongation factor Spt5 compare
MMP_RS04685 -1.6 -3.2 DUF126 domain-containing protein compare
MMP_RS06900 -1.6 -3.6 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS08095 -1.6 -6.3 dethiobiotin synthase compare
MMP_RS03640 -1.6 -4.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS02010 -1.6 -5.3 PHP domain-containing protein compare
MMP_RS08435 -1.6 -1.5 Era-like GTP-binding protein compare
MMP_RS01220 -1.6 -7.2 hypothetical protein compare
MMP_RS05845 -1.6 -2.0 tRNA-intron lyase compare
MMP_RS01610 -1.6 -2.9 hypothetical protein compare
MMP_RS03250 -1.6 -3.1 MJ1244 family protein compare
MMP_RS02145 -1.6 -7.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS07645 -1.6 -6.3 aldehyde dehydrogenase family protein compare
MMP_RS07390 -1.6 -2.3 cell division protein FtsZ compare
MMP_RS07075 -1.6 -3.7 phosphomannomutase/phosphoglucomutase compare
MMP_RS08635 -1.6 -2.0 UbiA family prenyltransferase compare
MMP_RS01880 -1.5 -6.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS08100 -1.5 -6.1 8-amino-7-oxononanoate synthase compare
MMP_RS08650 -1.5 -3.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS00685 -1.5 -3.7 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01795 -1.5 -1.2 methanogenesis marker 6 protein compare
MMP_RS06975 -1.5 -2.0 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS03435 -1.5 -1.2 ketol-acid reductoisomerase compare
MMP_RS05815 -1.5 -2.1 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS07545 -1.5 -1.1 HTH domain-containing protein compare
MMP_RS00110 -1.5 -2.8 hypothetical protein compare
MMP_RS00810 -1.5 -6.0 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS06895 -1.4 -1.6 selenocysteine-specific translation elongation factor compare
MMP_RS04585 -1.4 -7.3 AIR synthase related protein compare
MMP_RS06270 -1.4 -5.0 TIGR00300 family protein compare
MMP_RS07605 -1.4 -2.6 diadenylate cyclase compare
MMP_RS05550 -1.4 -0.6 cation:proton antiporter compare
MMP_RS07750 -1.4 -3.6 DUF357 domain-containing protein compare
MMP_RS03155 -1.4 -6.4 precorrin-6A reductase compare
MMP_RS02280 -1.4 -0.8 DUF211 domain-containing protein compare
MMP_RS05430 -1.4 -3.7 TIGR00288 family NYN domain-containing protein compare
MMP_RS01905 -1.3 -8.0 glycosyltransferase compare
MMP_RS01325 -1.3 -1.9 dihydroneopterin aldolase family protein compare
MMP_RS03145 -1.3 -3.8 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS07195 -1.3 -7.7 M20 family metallo-hydrolase compare
MMP_RS07575 -1.3 -3.6 RNA ligase partner protein compare
MMP_RS01075 -1.3 -1.9 hypothetical protein compare
MMP_RS00305 -1.3 -1.4 phosphoribosyl-ATP diphosphatase compare
MMP_RS06475 -1.3 -4.1 FAD-dependent oxidoreductase compare
MMP_RS08820 -1.3 -4.3 hypothetical protein compare
MMP_RS05540 -1.3 -3.6 hypothetical protein compare
MMP_RS05425 -1.3 -4.5 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01890 -1.3 -3.5 nucleotide sugar dehydrogenase compare
MMP_RS06600 -1.3 -1.5 class III signal peptide-containing protein compare
MMP_RS05925 -1.3 -3.4 small nuclear ribonucleoprotein compare
MMP_RS05345 -1.3 -6.6 hypothetical protein compare
MMP_RS00985 -1.3 -5.0 CDC48 family AAA ATPase compare
MMP_RS02235 -1.3 -5.3 CBS domain-containing protein compare
MMP_RS07625 -1.3 -3.2 cobalt ECF transporter T component CbiQ compare
MMP_RS06020 -1.3 -4.2 archaeoflavoprotein AfpA compare
MMP_RS00315 -1.2 -5.0 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS08600 -1.2 -2.7 flagellar protein D compare
MMP_RS01875 -1.2 -6.4 N-acetyltransferase compare
MMP_RS03475 -1.2 -0.5 hypothetical protein compare
MMP_RS03450 -1.2 -2.2 glycine synthesis protein GlyXS (from data) compare
MMP_RS08340 -1.2 -3.8 4Fe-4S binding protein compare
MMP_RS00520 -1.2 -1.3 RNA polymerase Rpb4 family protein compare
MMP_RS08595 -1.2 -0.9 flagellar protein C compare
MMP_RS07425 -1.2 -4.4 GTP-binding protein compare
MMP_RS01925 -1.2 -4.4 DUF1616 domain-containing protein compare
MMP_RS00515 -1.2 -0.8 DUF655 domain-containing protein compare
MMP_RS03580 -1.2 -2.1 signal recognition particle-docking protein FtsY compare
MMP_RS00895 -1.2 -2.6 hypothetical protein compare
MMP_RS07620 -1.2 -4.4 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS06215 -1.2 -2.5 30S ribosomal protein S6e compare
MMP_RS03960 -1.2 -0.7 hypothetical protein compare
MMP_RS01180 -1.2 -1.2 XTP/dITP diphosphatase compare
MMP_RS05765 -1.2 -5.0 M42 family metallopeptidase compare
MMP_RS00730 -1.1 -3.9 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS08370 -1.1 -0.6 cation:proton antiporter subunit C compare
MMP_RS01700 -1.1 -0.9 dihydroxy-acid dehydratase compare
MMP_RS06035 -1.1 -6.6 glycosyltransferase family 2 protein compare
MMP_RS01665 -1.1 -2.4 DUF2111 domain-containing protein compare
MMP_RS04850 -1.1 -8.6 UPF0254 family protein compare
MMP_RS05635 -1.1 -6.9 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS07710 -1.1 -5.9 cell division protein FtsZ compare
MMP_RS07200 -1.1 -3.6 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07540 -1.1 -3.9 CBS domain-containing protein compare
MMP_RS06230 -1.1 -2.4 helix-turn-helix domain-containing protein compare
MMP_RS08840 -1.1 -7.1 class I SAM-dependent methyltransferase compare
MMP_RS01885 -1.1 -4.3 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS06670 -1.1 -3.5 glucose-6-phosphate isomerase compare
MMP_RS03095 -1.1 -4.0 diphthine synthase compare
MMP_RS00050 -1.1 -4.8 AarF/UbiB family protein compare
MMP_RS07730 -1.1 -1.3 pyruvate synthase subunit beta compare
MMP_RS02165 -1.1 -5.4 tRNA-dihydrouridine synthase compare
MMP_RS00320 -1.1 -1.5 class I SAM-dependent methyltransferase compare
MMP_RS01800 -1.0 -2.7 TIGR00303 family protein compare
MMP_RS04875 -1.0 -4.1 energy-converting hydrogenase B subunit P compare
MMP_RS02190 -1.0 -2.3 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS02340 -1.0 -1.2 DNA-directed RNA polymerase subunit E'' compare
MMP_RS05580 -1.0 -8.0 glycosyltransferase compare
MMP_RS02885 -1.0 -7.7 molybdopterin biosynthesis protein compare
MMP_RS05245 -1.0 -5.4 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS05950 -1.0 -5.7 nickel-dependent hydrogenase large subunit compare
MMP_RS07695 -1.0 -3.6 DUF3236 domain-containing protein compare
MMP_RS06685 -1.0 -5.9 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS03205 -1.0 -1.0 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS07435 -1.0 -1.5 GMP synthase subunit A compare
MMP_RS04710 -1.0 -0.9 hypothetical protein compare
MMP_RS03140 -1.0 -6.9 hypothetical protein compare
MMP_RS08605 -0.9 -3.8 flagellar protein E compare
MMP_RS02790 -0.9 -0.9 class III signal peptide-containing protein compare
MMP_RS00725 -0.9 -3.9 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS08445 -0.9 -3.0 DUF2099 family protein compare
MMP_RS01975 -0.9 -4.7 hypothetical protein compare
MMP_RS03110 -0.9 -3.6 glycosyltransferase family 2 protein compare
MMP_RS01385 -0.9 -0.4 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS02930 -0.9 -2.5 class I SAM-dependent methyltransferase compare
MMP_RS06855 -0.9 -3.9 hypothetical protein compare
MMP_RS08590 -0.9 -2.7 flagellin compare
MMP_RS01910 -0.9 -3.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS05930 -0.9 -1.8 3-isopropylmalate dehydratase large subunit compare
MMP_RS07955 -0.9 -3.5 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS00115 -0.9 -4.5 radical SAM protein compare
MMP_RS03775 -0.9 -2.5 4Fe-4S dicluster domain-containing protein compare
MMP_RS06700 -0.9 -4.0 hypothetical protein compare
MMP_RS05525 -0.9 -2.8 calcium/sodium antiporter compare
MMP_RS02985 -0.9 -2.3 hypothetical protein compare
MMP_RS06110 -0.9 -2.7 ATP-dependent protease LonB compare
MMP_RS07420 -0.9 -2.6 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06865 -0.9 -2.1 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS07445 -0.9 -3.7 helix-turn-helix domain-containing protein compare
MMP_RS06980 -0.9 -3.3 tRNA 2-thiocytidine biosynthesis TtcA family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms