Experiment set4IT006 for Caulobacter crescentus NA1000

Compare to:

PYE with Sodium nitrite 2.5 mM

200 most detrimental genes:

  gene name fitness t score description  
CCNA_02075 +2.9 3.7 peptidoglycan binding endopeptidase DipM compare
CCNA_01712 +2.6 21.1 CopY/TcrY family transcriptional repressor compare
CCNA_00699 +2.6 13.1 LSU ribosomal protein L28P compare
CCNA_01979 +2.5 20.0 LexA repressor compare
CCNA_02103 +2.5 13.9 hypothetical protein compare
CCNA_02910 +2.5 21.1 TonB-dependent receptor compare
CCNA_01526 +2.4 12.0 flagellar biosynthesis regulatory protein flaF compare
CCNA_02000 +2.4 3.6 SSU ribosomal protein S2P compare
CCNA_00518 +2.4 15.8 LSU ribosomal protein L25P compare
CCNA_00521 +2.4 7.9 antitoxin protein compare
CCNA_01790 +2.3 11.0 protein translocase subunit secG compare
CCNA_01840 +2.3 19.5 MerR-family transcriptional regulator compare
CCNA_02980 +2.3 17.1 tryptophan 2,3-dioxygenase compare
CCNA_03064 +2.3 15.8 PadR-family transcriptional regulator compare
CCNA_01751 +2.3 8.8 aminodeoxychorismate lyase compare
CCNA_02957 +2.3 7.3 ArsR-family transcriptional regulator compare
CCNA_03287 +2.3 17.6 PadR-family transcriptional regulator compare
CCNA_01324 +2.3 9.1 LSU ribosomal protein L30P compare
CCNA_01094 +2.2 7.0 hypothetical protein compare
CCNA_R0037 +2.2 7.9 tRNA-Glu compare
CCNA_01815 +2.2 15.1 nitrogen assimilation regulatory protein NtrC compare
CCNA_01814 +2.2 17.4 nitrogen regulation protein ntrB compare
CCNA_00939 +2.2 9.4 MarR-family transcriptional regulator compare
CCNA_02732 +2.2 4.9 hypothetical protein compare
CCNA_02025 +2.2 9.0 hypothetical protein compare
CCNA_03289 +2.2 16.2 HicB-family RNA-binding protein compare
CCNA_03271 +2.2 17.4 methionine gamma-lyase compare
CCNA_01361 +2.2 9.3 PepSY superfamily protein compare
CCNA_03252 +2.1 14.4 CopY/TcrY-family transcriptional regulator compare
CCNA_01739 +2.1 12.9 LSU ribosomal protein L9P compare
CCNA_03384 +2.1 5.5 LSU ribosomal protein L31P compare
CCNA_00954 +2.1 17.2 AAA-family response regulator flbD compare
CCNA_02575 +2.1 8.3 hypothetical protein compare
CCNA_00735 +2.1 5.1 beta-barrel assembly machine (BAM) protein BamF compare
CCNA_03281 +2.0 17.7 AsnC-family transcriptional regulator compare
CCNA_03479 +2.0 12.9 MarR-family transcriptional regulator compare
CCNA_01730 +2.0 11.3 amidophosphoribosyltransferase compare
CCNA_00162 +2.0 12.2 hypothetical protein compare
CCNA_01573 +2.0 11.0 ArsR-family transcriptional regulator compare
CCNA_01058 +2.0 12.9 helix-turn-helix transcriptional regulator compare
CCNA_01059 +2.0 16.0 S-layer protein rsaA compare
CCNA_00161 +2.0 14.2 hypothetical protein compare
CCNA_01942 +2.0 12.2 Rrf2 family protein compare
CCNA_00769 +2.0 10.7 TetR family transcriptional regulator compare
CCNA_02021 +2.0 7.0 hypothetical protein compare
CCNA_02419 +2.0 7.4 TonB1 protein compare
CCNA_00924 +2.0 14.6 MarR/EmrR family transcriptional regulator compare
CCNA_01931 +2.0 15.4 TetR-family transcriptional regulator compare
CCNA_03989 +2.0 16.6 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_02646 +2.0 4.8 cell division protein MraZ compare
CCNA_03325 +2.0 9.5 hypothetical protein compare
CCNA_00920 +2.0 8.5 hypothetical protein compare
CCNA_03612 +2.0 14.7 HTH XRE-family transcriptional regulator compare
CCNA_03379 +2.0 5.4 Cro/CI family transcriptional regulator compare
CCNA_01913 +1.9 14.0 MarR-family transcriptional regulator compare
CCNA_01186 +1.9 10.3 hypothetical protein compare
CCNA_03129 +1.9 13.5 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_01624 +1.9 6.3 orotate phosphoribosyltransferase compare
CCNA_01742 +1.9 11.3 hypothetical protein compare
CCNA_02448 +1.9 10.9 hypothetical protein compare
CCNA_01801 +1.9 10.0 hypothetical protein compare
CCNA_03123 +1.9 13.2 ArsR-family transcriptional regulator compare
CCNA_02416 +1.9 12.0 DNA-binding protein HU compare
CCNA_00950 +1.9 14.9 flagellar M-ring protein FliF compare
CCNA_00756 +1.9 4.6 hypothetical protein compare
CCNA_02339 +1.9 12.2 methyltransferase compare
CCNA_02617 +1.9 15.5 histidinol-phosphate aminotransferase compare
CCNA_01242 +1.9 14.0 amino acid permease compare
CCNA_00962 +1.9 11.2 MarR-family transcriptional regulator compare
CCNA_00807 +1.9 5.2 ribonuclease P protein component compare
CCNA_03043 +1.9 8.5 type IV pilin protein pilA compare
CCNA_02133 +1.9 9.0 glucokinase compare
CCNA_00527 +1.9 11.5 hypothetical protein compare
CCNA_03951 +1.9 7.7 hypothetical protein compare
CCNA_02037 +1.9 10.7 ATP-dependent endopeptidase Lon compare
CCNA_01804 +1.9 11.6 glutathione peroxidase compare
CCNA_03280 +1.9 16.5 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_02619 +1.9 13.8 stomatin/prohibitin-related protein compare
CCNA_02447 +1.8 10.5 PspA/IM30 family regulatory protein compare
CCNA_03372 +1.8 7.9 bacterioferritin-associated ferredoxin compare
CCNA_00947 +1.8 14.7 flagellar hook protein FlgE compare
CCNA_01968 +1.8 6.0 pentapeptide repeats containing protein compare
CCNA_03961 +1.8 7.6 hypothetical protein compare
CCNA_03062 +1.8 11.4 cell wall hydrolase family protein compare
CCNA_03959 +1.8 2.0 hypothetical protein compare
CCNA_00944 +1.8 10.4 flagellar hook length determination protein compare
CCNA_02591 +1.8 7.9 glutaredoxin compare
CCNA_01684 +1.8 11.9 phenylalanine-4-hydroxylase compare
CCNA_01525 +1.8 11.2 flagellar biosynthesis repressor flbT compare
CCNA_00684 +1.8 7.3 anti-sigma factor, ChrR-family compare
CCNA_03012 +1.8 11.7 peroxiredoxin compare
CCNA_00951 +1.8 11.8 flagellar motor switch protein FliG compare
CCNA_02026 +1.8 8.0 hypothetical protein compare
CCNA_00846 +1.8 15.5 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_02663 +1.8 4.6 DnaK suppressor protein DksA compare
CCNA_02328 +1.8 1.9 cell cycle regulatory protein GcrA compare
CCNA_00505 +1.8 11.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_03936 +1.8 7.2 hypothetical protein compare
CCNA_02028 +1.7 2.7 NTF2 superfamily protein compare
CCNA_00803 +1.7 8.5 chemotaxis protein cheW compare
CCNA_02042 +1.7 12.4 trigger factor chaperone compare
CCNA_02225 +1.7 10.9 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_00517 +1.7 1.5 peptidyl-tRNA hydrolase compare
CCNA_02644 +1.7 5.2 cell division protein FtsL compare
CCNA_01505 +1.7 6.7 hypothetical protein compare
CCNA_00945 +1.7 9.4 chemotaxis protein MotD compare
CCNA_02576 +1.7 11.3 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_02616 +1.7 12.8 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_02073 +1.7 7.1 cupin domain transcriptional regulator compare
CCNA_02242 +1.7 9.1 PHB granule-associated protein, phasin2 compare
CCNA_02289 +1.7 13.7 MarR/EmrR family transcriptional regulator compare
CCNA_03420 +1.7 9.9 hypothetical protein compare
CCNA_01964 +1.7 6.1 NADH dehydrogenase compare
CCNA_01655 +1.7 10.3 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_03108 +1.7 13.8 TonB-dependent outer membrane receptor compare
CCNA_01235 +1.7 9.7 AcrR-family transcriptional regulator compare
CCNA_03519 +1.6 7.1 PadR-family transcriptional regulator compare
CCNA_01181 +1.6 8.7 hypothetical protein compare
CCNA_03938 +1.6 5.4 hypothetical protein compare
CCNA_00375 +1.6 7.6 hypothetical protein compare
CCNA_00999 +1.6 8.4 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_03805 +1.6 12.4 PadR-family transcriptional regulator compare
CCNA_01926 +1.6 8.9 GGDEF diguanylate cyclase DgcB compare
CCNA_00895 +1.6 11.2 hypothetical protein compare
CCNA_02081 +1.6 9.0 Sec-independent protein translocase protein tatB compare
CCNA_00354 +1.6 8.7 NlpC/P60 CHAP domain amidase protein compare
CCNA_00210 +1.6 13.6 TonB-dependent receptor compare
CCNA_01453 +1.6 9.1 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_00441 +1.6 9.9 chemotaxis receiver domain protein cheYI compare
CCNA_00952 +1.6 9.6 flagellar assembly protein FlbE/FliH compare
CCNA_03215 +1.6 11.2 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_01780 +1.6 11.1 exopolyphosphatase compare
CCNA_02941 +1.6 5.1 transcription elongation factor greA compare
CCNA_03132 +1.6 7.4 transcriptional regulator, antitoxin protein higA compare
CCNA_02379 +1.6 9.4 hypothetical protein compare
CCNA_02030 +1.6 4.0 hypothetical protein compare
CCNA_03876 +1.6 1.7 transcription termination factor rho compare
CCNA_02567 +1.6 11.3 sensory transduction histidine kinase pleC compare
CCNA_03089 +1.6 10.2 hypothetical protein compare
CCNA_03689 +1.6 11.7 alanine dehydrogenase compare
CCNA_00919 +1.6 6.9 hypothetical protein compare
CCNA_00834 +1.5 7.8 flagellin FljM compare
CCNA_00447 +1.5 8.7 chemotaxis protein cheD compare
CCNA_03464 +1.5 6.1 glycine cleavage system H protein compare
CCNA_01690 +1.5 5.2 MAPEG family membrane protein compare
CCNA_01802 +1.5 4.0 hypothetical protein compare
CCNA_02004 +1.5 3.6 SOS-induced inhibitor of cell division SidA compare
CCNA_03513 +1.5 9.1 cytochrome c oxidase subunit III coxC compare
CCNA_02976 +1.5 7.9 MCP-signal associated domain protein compare
CCNA_03136 +1.5 7.2 flagellar export protein FliJ compare
CCNA_02138 +1.5 8.0 hypothetical protein compare
CCNA_02063 +1.5 8.7 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_00497 +1.5 10.1 putative rhamnosyl transferase compare
CCNA_00998 +1.5 8.1 ROS/MUCR transcriptional regulator compare
CCNA_01826 +1.5 10.4 vitamin B12 receptor compare
CCNA_01678 +1.5 8.4 arginine N-succinyltransferase, beta chain compare
CCNA_03893 +1.5 3.5 hypothetical protein compare
CCNA_02341 +1.5 10.2 small heat shock protein compare
CCNA_01679 +1.5 9.5 succinylglutamic semialdehyde dehydrogenase compare
CCNA_01541 +1.5 10.7 LysR-family transcriptional regulator compare
CCNA_02036 +1.5 4.8 DNA-binding protein HU compare
CCNA_01528 +1.5 9.5 flagellin fljK compare
CCNA_01775 +1.5 6.8 phosphoribosylformylglycinamidine cyclo-ligase compare
CCNA_01393 +1.5 10.9 soluble lytic murein transglycosylase compare
CCNA_02805 +1.5 8.1 hypothetical protein compare
CCNA_00726 +1.5 11.0 acyl-CoA dehydrogenase compare
CCNA_02475 +1.5 11.7 transcriptional regulator vanR compare
CCNA_00705 +1.5 4.9 hypothetical protein compare
CCNA_00438 +1.5 6.3 hypothetical protein compare
CCNA_01060 +1.5 5.9 type I protein secretion ATP-binding protein RsaD compare
CCNA_03964 +1.5 4.0 hypothetical protein compare
CCNA_00946 +1.5 8.5 Basal-body rod modification protein FlgD compare
CCNA_03518 +1.5 11.9 cytochrome c oxidase polypeptide II coxB compare
CCNA_03391 +1.5 9.5 Cro/CI family transcriptional regulator compare
CCNA_01074 +1.4 3.4 entericidin B-like protein compare
CCNA_00448 +1.4 9.2 cheU protein compare
CCNA_00781 +1.4 10.3 two-component receiver protein CpdR compare
CCNA_02942 +1.4 4.7 nucleoside-diphosphate-sugar epimerase compare
CCNA_00322 +1.4 11.5 hypothetical protein compare
CCNA_00953 +1.4 5.3 flagellar motor switch protein FliN compare
CCNA_00400 +1.4 8.5 MarR/EmrR-family transcriptional regulator compare
CCNA_01420 +1.4 5.6 NrdR family transcriptional regulator compare
CCNA_00675 +1.4 6.7 VapC-like PIN domain ribonuclease compare
CCNA_02760 +1.4 3.8 hypothetical protein compare
CCNA_01608 +1.4 6.5 TetR-family transcriptional regulator compare
CCNA_01923 +1.4 8.4 ATP-dependent RNA helicase compare
CCNA_01763 +1.4 9.2 multifunctional aminopeptidase compare
CCNA_02846 +1.4 10.1 DegP/HtrA-family serine protease compare
CCNA_02367 +1.4 9.8 CelR-family transcriptional regulator compare
CCNA_01193 +1.4 11.2 amylosucrase compare
CCNA_01008 +1.4 10.9 urocanate hydratase compare
CCNA_01619 +1.4 8.1 NYN domain protein compare
CCNA_02273 +1.4 8.9 glutathione peroxidase compare
CCNA_01827 +1.4 6.4 cobyric acid synthase CobQ compare
CCNA_01691 +1.4 7.9 tRNA/rRNA methyltransferase compare
CCNA_01851 +1.4 12.4 quinol cytochrome oxidase polypeptide II compare
CCNA_02330 +1.4 7.4 hypothetical protein compare
CCNA_03105 +1.4 7.4 DnaJ domain protein compare
CCNA_01813 +1.4 8.4 tRNA-dihydrouridine synthase compare
CCNA_00215 +1.4 8.6 SapC surface layer protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium nitrite in Caulobacter crescentus NA1000

For stress Sodium nitrite across organisms