Experiment set4IT006 for Ralstonia sp. UNC404CL21Col

Compare to:

soil EcoFAB sample 1; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS16795 -7.9 -2.4 VOC family protein compare
ABZR87_RS02655 -7.3 -5.1 anti-sigma factor compare
ABZR87_RS21795 -6.9 -4.2 NUDIX domain-containing protein compare
ABZR87_RS04565 -6.6 -2.0 PaaI family thioesterase compare
ABZR87_RS14500 -6.6 -6.4 tryptophan synthase subunit beta compare
ABZR87_RS07290 -6.5 -2.0 DUF6691 family protein compare
ABZR87_RS02160 -6.5 -3.6 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS14505 -6.5 -3.3 phosphoribosylanthranilate isomerase compare
ABZR87_RS12065 -6.1 -2.2 L-rhamnose mutarotase compare
ABZR87_RS08630 -6.1 -4.2 dihydroorotase compare
ABZR87_RS08695 -6.0 -21.8 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS12385 -5.9 -1.1 AraC family transcriptional regulator compare
ABZR87_RS06400 -5.9 -8.1 response regulator transcription factor compare
ABZR87_RS00865 -5.8 -1.0 VTT domain-containing protein compare
ABZR87_RS08640 -5.8 -3.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS01745 -5.8 -3.4 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS17650 -5.7 -5.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS23290 -5.7 -2.0 2-hydroxychromene-2-carboxylate isomerase compare
ABZR87_RS22920 -5.5 -3.8 phosphogluconate dehydratase compare
ABZR87_RS01225 -5.5 -2.4 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS02155 -5.5 -6.7 anthranilate phosphoribosyltransferase compare
ABZR87_RS02145 -5.4 -1.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS19675 -5.3 -0.9 cold-shock protein compare
ABZR87_RS06845 -5.2 -8.8 heme o synthase compare
ABZR87_RS10170 -5.2 -3.3 RseA family anti-sigma factor compare
ABZR87_RS05100 -5.2 -3.3 RNA polymerase-binding protein DksA compare
ABZR87_RS21245 -5.1 -0.9 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS00820 -5.1 -2.1 YajQ family cyclic di-GMP-binding protein compare
ABZR87_RS05305 -5.1 -13.6 TetR family transcriptional regulator compare
ABZR87_RS23095 -5.1 -0.9 MarR family transcriptional regulator compare
ABZR87_RS10175 -5.1 -5.0 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS21285 -5.1 -1.3 TetR/AcrR family transcriptional regulator compare
ABZR87_RS08400 -5.1 -1.3 glycine zipper 2TM domain-containing protein compare
ABZR87_RS08990 -5.1 -3.5 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS08505 -5.1 -1.8 CpaE family protein compare
ABZR87_RS20690 -5.0 -1.5 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS20500 -5.0 -0.9 hypothetical protein compare
ABZR87_RS02595 -5.0 -11.1 shikimate kinase compare
ABZR87_RS19010 -4.9 -2.1 acyloxyacyl hydrolase compare
ABZR87_RS21110 -4.8 -2.1 GntR family transcriptional regulator compare
ABZR87_RS20440 -4.8 -0.9 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS16055 -4.8 -5.7 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS21815 -4.8 -0.8 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS17115 -4.7 -2.2 phytanoyl-CoA dioxygenase family protein compare
ABZR87_RS13285 -4.7 -12.1 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS02075 -4.7 -1.4 23S ribosomal RNA compare
ABZR87_RS14535 -4.6 -4.8 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS05645 -4.6 -3.0 SDR family oxidoreductase compare
ABZR87_RS08070 -4.6 -1.6 pyruvate kinase compare
ABZR87_RS02550 -4.6 -3.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS20555 -4.6 -4.8 helix-turn-helix transcriptional regulator compare
ABZR87_RS14115 -4.5 -3.0 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS03865 -4.5 -10.4 GntR family transcriptional regulator compare
ABZR87_RS14490 -4.5 -9.1 tryptophan synthase subunit alpha compare
ABZR87_RS14330 -4.5 -0.8 hypothetical protein compare
ABZR87_RS09465 -4.5 -6.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02440 -4.5 -3.1 twin-arginine translocase subunit TatC compare
ABZR87_RS13475 -4.5 -3.1 PAS domain S-box protein compare
ABZR87_RS14540 -4.4 -5.6 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS14965 -4.3 -2.4 DUF3619 family protein compare
ABZR87_RS01255 -4.3 -10.0 LysR substrate-binding domain-containing protein compare
ABZR87_RS05635 -4.3 -14.2 muropeptide transporter compare
ABZR87_RS22690 -4.3 -2.9 XRE family transcriptional regulator compare
ABZR87_RS07355 -4.3 -7.4 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS16720 -4.3 -1.3 collagen-like triple helix repeat-containing protein compare
ABZR87_RS14530 -4.3 -6.5 3-isopropylmalate dehydrogenase compare
ABZR87_RS18300 -4.3 -2.5 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABZR87_RS02590 -4.2 -11.1 3-dehydroquinate synthase compare
ABZR87_RS16735 -4.2 -10.9 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS15010 -4.2 -2.1 DUF924 family protein compare
ABZR87_RS15605 -4.2 -1.9 hypothetical protein compare
ABZR87_RS06840 -4.2 -8.8 COX15/CtaA family protein compare
ABZR87_RS07380 -4.2 -17.0 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02140 -4.2 -14.3 anthranilate synthase component I compare
ABZR87_RS11755 -4.2 -1.0 arsenate reductase compare
ABZR87_RS04975 -4.1 -1.9 peptide deformylase compare
ABZR87_RS11010 -4.1 -1.5 oxidative damage protection protein compare
ABZR87_RS08795 -4.1 -2.5 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS05145 -4.1 -1.0 copper chaperone PCu(A)C compare
ABZR87_RS02640 -4.1 -11.0 diaminopimelate decarboxylase compare
ABZR87_RS16730 -4.1 -4.8 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS01810 -4.1 -2.9 glutamate 5-kinase compare
ABZR87_RS08645 -4.0 -0.7 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS23380 -4.0 -1.0 chemotaxis protein CheW compare
ABZR87_RS08985 -4.0 -9.6 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS00435 -3.9 -2.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS14510 -3.9 -2.7 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS07665 -3.9 -9.8 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS13705 -3.9 -1.2 integration host factor subunit alpha compare
ABZR87_RS04945 -3.8 -1.8 DUF4390 domain-containing protein compare
ABZR87_RS07470 -3.8 -2.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS06250 -3.8 -4.6 hydroxymethylglutaryl-CoA lyase compare
ABZR87_RS02385 -3.8 -4.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS01645 -3.8 -3.9 type II 3-dehydroquinate dehydratase compare
ABZR87_RS11790 -3.8 -1.5 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS21365 -3.8 -0.9 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS22910 -3.7 -1.9 6-phosphogluconolactonase compare
ABZR87_RS13790 -3.7 -7.8 chorismate synthase compare
ABZR87_RS05660 -3.7 -7.5 ornithine--oxo-acid transaminase compare
ABZR87_RS04865 -3.7 -2.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS11170 -3.6 -0.6 FixH family protein compare
ABZR87_RS01685 -3.6 -4.8 histone H1-like DNA-binding protein compare
ABZR87_RS07005 -3.6 -1.4 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS14605 -3.6 -9.9 aconitate hydratase AcnA compare
ABZR87_RS10800 -3.6 -2.7 YbaB/EbfC family nucleoid-associated protein compare
ABZR87_RS06495 -3.6 -1.6 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS17310 -3.6 -4.8 PadR family transcriptional regulator compare
ABZR87_RS09515 -3.5 -1.4 cysteine synthase CysM compare
ABZR87_RS06725 -3.5 -8.7 phosphoenolpyruvate--protein phosphotransferase compare
ABZR87_RS10195 -3.5 -2.1 signal peptidase I compare
ABZR87_RS16185 -3.5 -1.4 dCTP deaminase compare
ABZR87_RS10085 -3.5 -1.2 Rne/Rng family ribonuclease compare
ABZR87_RS23125 -3.5 -7.6 XRE family transcriptional regulator compare
ABZR87_RS17145 -3.4 -8.6 AMP nucleosidase compare
ABZR87_RS00745 -3.4 -1.0 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS10930 -3.4 -1.5 outer membrane protein assembly factor BamB compare
ABZR87_RS16170 -3.4 -2.2 argininosuccinate lyase compare
ABZR87_RS12785 -3.4 -2.4 endopeptidase La compare
ABZR87_RS01885 -3.4 -3.0 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS07035 -3.4 -2.3 RNase adapter RapZ compare
ABZR87_RS06405 -3.4 -0.8 hypothetical protein compare
ABZR87_RS01285 -3.4 -1.0 preprotein translocase subunit YajC compare
ABZR87_RS03565 -3.4 -6.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS16960 -3.3 -2.3 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS20665 -3.3 -2.6 IclR family transcriptional regulator compare
ABZR87_RS02540 -3.3 -5.5 VacJ family lipoprotein compare
ABZR87_RS08970 -3.3 -9.2 protein TolQ compare
ABZR87_RS01085 -3.2 -2.6 rhombosortase compare
ABZR87_RS21225 -3.2 -1.1 LysR family transcriptional regulator compare
ABZR87_RS04940 -3.2 -2.2 PAS domain-containing sensor histidine kinase compare
ABZR87_RS02545 -3.2 -7.5 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS02850 -3.2 -1.7 elongation factor Tu compare
ABZR87_RS13770 -3.1 -5.7 CoA transferase subunit A compare
ABZR87_RS09440 -3.1 -5.3 DUF2059 domain-containing protein compare
ABZR87_RS12750 -3.1 -2.1 ABC transporter ATP-binding protein compare
ABZR87_RS00795 -3.1 -2.0 site-specific tyrosine recombinase XerD compare
ABZR87_RS08635 -3.1 -4.7 lysophospholipid acyltransferase family protein compare
ABZR87_RS10980 -3.1 -0.8 tRNA-Leu compare
ABZR87_RS11525 -3.0 -1.2 molybdopterin-binding protein compare
ABZR87_RS17440 -3.0 -0.7 (2Fe-2S)-binding protein compare
ABZR87_RS16660 -3.0 -4.3 helix-turn-helix domain-containing protein compare
ABZR87_RS03850 -3.0 -3.2 ureidoglycolate lyase compare
ABZR87_RS15955 -3.0 -2.1 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
ABZR87_RS21065 -2.9 -5.4 FAD-dependent oxidoreductase compare
ABZR87_RS09450 -2.9 -5.6 prephenate dehydratase compare
ABZR87_RS10395 -2.9 -4.8 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS13175 -2.9 -1.0 tRNA-Leu compare
ABZR87_RS14375 -2.9 -2.9 fumarate hydratase compare
ABZR87_RS02535 -2.9 -4.6 phospholipid-binding protein MlaC compare
ABZR87_RS11435 -2.9 -1.8 Mth938-like domain-containing protein compare
ABZR87_RS00005 -2.9 -1.4 hypothetical protein compare
ABZR87_RS06705 -2.8 -11.0 glutamate--cysteine ligase compare
ABZR87_RS07675 -2.8 -4.7 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS21055 -2.8 -3.8 cyclopropane-fatty-acyl-phospholipid synthase family protein compare
ABZR87_RS06745 -2.8 -5.7 S41 family peptidase compare
ABZR87_RS08875 -2.8 -2.4 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
ABZR87_RS04785 -2.8 -5.9 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS15575 -2.8 -2.1 hypothetical protein compare
ABZR87_RS20680 -2.7 -1.8 SDR family oxidoreductase compare
ABZR87_RS02320 -2.7 -2.4 cytochrome o ubiquinol oxidase subunit IV compare
ABZR87_RS02630 -2.7 -4.5 iron donor protein CyaY compare
ABZR87_RS11195 -2.7 -7.8 pseudouridine synthase compare
ABZR87_RS15380 -2.7 -1.2 SDR family oxidoreductase compare
ABZR87_RS01980 -2.7 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS00340 -2.7 -1.8 50S ribosomal protein L33 compare
ABZR87_RS02375 -2.7 -6.0 cytochrome c1 compare
ABZR87_RS16740 -2.7 -4.2 2-methylcitrate synthase compare
ABZR87_RS23180 -2.7 -0.7 ABC transporter ATP-binding protein compare
ABZR87_RS12790 -2.7 -1.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS07510 -2.7 -4.7 LysR family transcriptional regulator compare
ABZR87_RS01110 -2.6 -6.0 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS17910 -2.6 -5.8 IclR family transcriptional regulator compare
ABZR87_RS02570 -2.6 -11.8 glutamate synthase-related protein compare
ABZR87_RS01615 -2.6 -0.6 RNB domain-containing ribonuclease compare
ABZR87_RS20785 -2.6 -0.8 DUF2783 domain-containing protein compare
ABZR87_RS07360 -2.6 -7.5 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS13495 -2.6 -4.9 exodeoxyribonuclease III compare
ABZR87_RS07050 -2.6 -1.1 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS23265 -2.5 -1.9 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS08610 -2.5 -3.3 YqgE/AlgH family protein compare
ABZR87_RS04235 -2.5 -4.6 heavy metal translocating P-type ATPase compare
ABZR87_RS00305 -2.5 -8.5 ABC transporter ATP-binding protein compare
ABZR87_RS04995 -2.5 -1.9 DNA topoisomerase III compare
ABZR87_RS07710 -2.4 -5.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR87_RS08700 -2.4 -7.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS21050 -2.4 -1.8 DUF1295 domain-containing protein compare
ABZR87_RS17315 -2.4 -2.8 MarR family transcriptional regulator compare
ABZR87_RS13300 -2.4 -6.6 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS21060 -2.4 -3.1 DUF1365 domain-containing protein compare
ABZR87_RS05320 -2.4 -8.9 efflux transporter outer membrane subunit compare
ABZR87_RS23390 -2.4 -4.5 anti-sigma factor compare
ABZR87_RS09445 -2.4 -6.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS00300 -2.4 -4.8 ABC transporter ATP-binding protein compare
ABZR87_RS09935 -2.4 -1.6 amino acid aminotransferase compare
ABZR87_RS06820 -2.3 -4.6 cytochrome c oxidase subunit 3 compare
ABZR87_RS05570 -2.3 -4.9 lysophospholipid acyltransferase family protein compare
ABZR87_RS13415 -2.3 -4.5 IclR family transcriptional regulator compare
ABZR87_RS09940 -2.3 -7.6 excinuclease ABC subunit UvrB compare
ABZR87_RS09875 -2.3 -1.9 GNAT family protein compare
ABZR87_RS17730 -2.3 -4.2 GntR family transcriptional regulator compare


Specific Phenotypes

For 10 genes in this experiment