Experiment set4IT006 for Ralstonia sp. UNC404CL21Col

soil EcoFAB sample 1; outgrowth in LB

Group: soil
Media:
Culturing: CL21_ML4, EcoFAB
By: Dawn Chiniquy on 4-Apr-19

Specific Phenotypes

For 10 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Anaerobic respiratory reductases	1
Arginine and Ornithine Degradation	1
Aromatic amino acid interconversions with aryl acids	1
Dimethylarginine metabolism	1
High affinity phosphate transporter and control of PHO regulon	1
Phosphate metabolism	1
Potassium homeostasis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Arginine and proline metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-proline biosynthesis III (from L-ornithine)	3	3	1
L-arginine degradation I (arginase pathway)	3	3	1
L-ornithine biosynthesis II	3	3	1
L-arginine degradation VI (arginase 2 pathway)	4	4	1
arsenic detoxification (bacteria)	4	2	1
L-arginine degradation XIII (reductive Stickland reaction)	5	4	1
arsenate detoxification I	6	3	1
L-Nδ-acetylornithine biosynthesis	7	5	1
L-citrulline biosynthesis	8	7	1
superpathway of L-citrulline metabolism	12	9	1