Experiment set4IT005 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with Sodium Chlorite 0.08 mM

200 most important genes:

  gene name fitness t score description  
AO356_18065 -4.7 -3.3 7-carboxy-7-deazaguanine synthase compare
AO356_17345 -4.4 -3.0 molybdenum cofactor biosynthesis protein MoaE compare
AO356_15165 -4.2 -2.9 protein cII compare
AO356_04550 -4.1 -4.0 response regulator SirA compare
AO356_21275 -4.1 -2.8 peptidase compare
AO356_03495 -3.9 -4.3 phosphoglycolate phosphatase compare
AO356_16095 -3.9 -7.0 molecular chaperone DnaK compare
AO356_16505 -3.6 -3.5 molybdopterin-synthase adenylyltransferase compare
AO356_24240 -3.6 -7.0 ABC transporter ATP-binding protein compare
AO356_04575 -3.5 -9.9 RNA polymerase subunit sigma compare
AO356_16195 -3.5 -14.7 sulfite oxidase conserved
AO356_02460 -3.5 -3.2 hypothetical protein compare
AO356_18025 -3.5 -3.4 ATP-dependent DNA helicase RuvB compare
AO356_16190 -3.5 -11.6 sulfoxide reductase catalytic subunit YedY conserved
AO356_06415 -3.5 -4.1 cytochrome C assembly protein compare
AO356_19060 -3.5 -14.9 (p)ppGpp synthetase compare
AO356_17335 -3.3 -5.1 molybdenum cofactor biosynthesis protein MoaC compare
AO356_21170 -3.3 -5.5 hemolysin secretion protein D compare
AO356_24290 -3.3 -9.3 energy transducer TonB compare
AO356_21125 -3.3 -3.2 cyclic peptide transporter compare
AO356_02205 -3.2 -3.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_06685 -3.2 -2.2 preprotein translocase subunit YajC compare
AO356_24245 -3.1 -3.7 siderophore-iron reductase FhuF compare
AO356_15645 -3.1 -6.3 ubiquinol oxidase subunit II conserved
AO356_11610 -3.0 -2.1 glycerol acyltransferase compare
AO356_09540 -3.0 -2.5 twin-arginine protein translocation system subunit TatC compare
AO356_12640 -3.0 -3.2 cytochrome C compare
AO356_12515 -3.0 -4.1 exodeoxyribonuclease III compare
AO356_19840 -3.0 -6.4 histidine kinase compare
AO356_26070 -3.0 -6.3 peptide ABC transporter substrate-binding protein compare
AO356_03620 -2.9 -4.4 cytochrome C compare
AO356_04560 -2.9 -2.8 serine peptidase compare
AO356_22735 -2.9 -6.9 molybdenum ABC transporter permease conserved
AO356_18300 -2.9 -5.5 (2Fe-2S)-binding protein compare
AO356_09820 -2.9 -16.6 MFS transporter conserved
AO356_05670 -2.8 -2.7 recombinase RecA compare
AO356_10345 -2.8 -5.3 RNA pyrophosphohydrolase compare
AO356_12380 -2.8 -7.2 ATP-dependent DNA helicase RecG compare
AO356_06695 -2.8 -6.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO356_00575 -2.8 -2.6 SCP-2 family sterol carrier protein compare
AO356_15640 -2.7 -7.9 cytochrome D ubiquinol oxidase subunit I conserved
AO356_07210 -2.7 -3.3 histidine kinase compare
AO356_19420 -2.7 -2.6 septum formation inhibitor compare
AO356_11450 -2.7 -2.6 cytochrome C compare
AO356_18070 -2.7 -4.8 7-cyano-7-deazaguanine synthase compare
AO356_18270 -2.7 -8.0 iron ABC transporter ATP-binding protein compare
AO356_25995 -2.6 -2.6 acetylglucosaminylphosphatidylinositol deacetylase compare
AO356_22740 -2.6 -4.9 molybdate ABC transporter substrate-binding protein conserved
AO356_20215 -2.6 -5.0 radical SAM protein compare
AO356_06575 -2.6 -2.5 outer membrane protein assembly factor BamB compare
AO356_10170 -2.5 -2.9 chemotaxis protein CheY compare
AO356_02980 -2.4 -6.9 molybdenum cofactor biosynthesis protein MoaA compare
AO356_08320 -2.4 -4.6 copper resistance protein CopZ compare
AO356_17070 -2.4 -3.2 cytochrome B compare
AO356_24335 -2.4 -1.8 type VI secretion protein compare
AO356_18020 -2.3 -3.5 ATP-dependent DNA helicase RuvA compare
AO356_04885 -2.3 -5.3 multidrug transporter compare
AO356_03800 -2.3 -2.1 histidine kinase compare
AO356_02465 -2.3 -2.7 carbonate dehydratase compare
AO356_12725 -2.3 -4.4 recombinase XerC compare
AO356_09765 -2.3 -3.0 sulfurtransferase compare
AO356_15420 -2.3 -5.9 hypothetical protein compare
AO356_17065 -2.2 -2.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_24990 -2.2 -2.7 4-oxalocrotonate tautomerase compare
AO356_17075 -2.2 -3.0 cytochrome C compare
AO356_18150 -2.2 -3.0 hypothetical protein compare
AO356_24250 -2.2 -6.0 ABC transporter ATP-binding protein compare
AO356_11055 -2.2 -3.9 long-chain acyl-CoA thioester hydrolase compare
AO356_11315 -2.2 -2.1 shikimate dehydrogenase compare
AO356_16955 -2.2 -5.9 disulfide bond formation protein B compare
AO356_18455 -2.2 -5.4 imelysin compare
AO356_18250 -2.1 -10.4 glycerol kinase compare
AO356_13030 -2.1 -11.5 iron ABC transporter permease conserved
AO356_02985 -2.1 -5.6 molybdenum cofactor biosynthesis protein B compare
AO356_02250 -2.1 -6.8 pyridine nucleotide-disulfide oxidoreductase compare
AO356_08895 -2.0 -2.0 GlcNAc-PI de-N-acetylase compare
AO356_07000 -2.0 -2.5 ABC transporter permease compare
AO356_21165 -2.0 -5.3 macrolide ABC transporter ATP-binding protein compare
AO356_01745 -2.0 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_13320 -2.0 -3.4 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO356_11025 -1.9 -4.8 transcriptional regulator PhoU compare
AO356_18450 -1.8 -7.2 outer membrane component of uptake system, probably for ferrous iron (from data) compare
AO356_02190 -1.8 -5.8 hypothetical protein compare
AO356_05015 -1.8 -7.9 peptidase compare
AO356_11205 -1.8 -5.7 copper-binding protein compare
AO356_22125 -1.8 -5.6 isocitrate dehydrogenase compare
AO356_06385 -1.8 -3.0 recombinase XerD compare
AO356_12520 -1.8 -2.4 orotate phosphoribosyltransferase compare
AO356_17830 -1.8 -4.0 pyruvate kinase compare
AO356_01630 -1.8 -4.4 anti-sigma factor compare
AO356_05245 -1.8 -2.7 heme oxygenase compare
AO356_08905 -1.8 -2.5 glycosyl transferase compare
AO356_02440 -1.8 -4.9 cytochrome C oxidase Cbb3 compare
AO356_11340 -1.8 -1.3 NADH-flavin reductase compare
AO356_18460 -1.7 -5.3 thiol oxidoreductase compare
AO356_07160 -1.7 -2.0 4-carboxymuconolactone decarboxylase compare
AO356_01740 -1.7 -2.6 DNA-binding protein compare
AO356_08955 -1.7 -6.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO356_17520 -1.7 -1.6 phosphoribosylformylglycinamidine synthase compare
AO356_07910 -1.7 -1.6 exodeoxyribonuclease V subunit alpha compare
AO356_13025 -1.7 -10.2 iron ABC transporter substrate-binding protein compare
AO356_06005 -1.7 -3.3 zinc metallopeptidase RseP compare
AO356_03500 -1.7 -2.9 3-oxoacyl-ACP reductase compare
AO356_02425 -1.6 -6.4 cytochrome C oxidase Cbb3 compare
AO356_08235 -1.6 -5.2 histidine kinase compare
AO356_11420 -1.6 -6.5 histidine kinase compare
AO356_15460 -1.6 -1.9 hypothetical protein compare
AO356_09810 -1.6 -3.5 imidazole glycerol phosphate synthase subunit HisH compare
AO356_30275 -1.6 -1.8 hypothetical protein compare
AO356_19835 -1.6 -1.2 histidine kinase compare
AO356_08890 -1.6 -6.0 glycosyltransferase compare
AO356_26895 -1.5 -1.8 2Fe-2S ferredoxin compare
AO356_10165 -1.5 -5.4 ATPase compare
AO356_20475 -1.5 -1.0 hypothetical protein compare
AO356_15815 -1.5 -1.7 gamma-glutamyl kinase compare
AO356_07915 -1.5 -2.4 exodeoxyribonuclease V subunit beta compare
AO356_18255 -1.5 -6.9 glycerol uptake facilitator GlpF compare
AO356_01875 -1.5 -1.3 Cro/Cl family transcriptional regulator compare
AO356_08375 -1.5 -1.3 acetyltransferase compare
AO356_09800 -1.5 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_08645 -1.5 -3.7 hypothetical protein compare
AO356_21320 -1.4 -1.3 tRNA-Asn compare
AO356_12660 -1.4 -3.4 diguanylate cyclase compare
AO356_21260 -1.4 -1.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_29105 -1.4 -1.9 fumarylacetoacetate hydrolase compare
AO356_16970 -1.4 -6.0 cytochrome o ubiquinol oxidase subunit III compare
AO356_04230 -1.4 -2.4 3-phosphoglycerate kinase compare
AO356_16910 -1.4 -3.6 RNA polymerase subunit sigma compare
AO356_03010 -1.4 -2.6 glutaredoxin compare
AO356_12005 -1.4 -7.4 transcriptional regulator compare
AO356_01275 -1.4 -4.3 GntR family transcriptional regulator compare
AO356_06460 -1.4 -4.9 copper oxidase compare
AO356_06965 -1.4 -5.3 histidinol dehydrogenase compare
AO356_21160 -1.4 -3.6 RND transporter compare
AO356_16060 -1.4 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_17035 -1.4 -3.7 ATPase compare
AO356_27505 -1.4 -2.8 transcriptional regulator compare
AO356_16900 -1.3 -9.2 transporter conserved
AO356_16170 -1.3 -6.5 acetolactate synthase 3 catalytic subunit compare
AO356_22795 -1.3 -1.7 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_02325 -1.3 -1.4 3-ketoacyl-CoA thiolase compare
AO356_12945 -1.3 -3.5 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO356_28965 -1.3 -4.1 monooxygenase compare
AO356_00605 -1.3 -2.6 TetR family transcriptional regulator compare
AO356_20175 -1.3 -1.8 3-oxoacyl-ACP synthase compare
AO356_15330 -1.3 -2.8 D-alanyl-D-alanine carboxypeptidase compare
AO356_27180 -1.3 -2.0 hypothetical protein compare
AO356_02590 -1.3 -1.7 hypothetical protein compare
AO356_22905 -1.3 -3.3 transcriptional regulator compare
AO356_28370 -1.3 -2.9 ABC transporter ATP-binding protein compare
AO356_14790 -1.3 -5.0 MFS transporter compare
AO356_26755 -1.2 -2.2 DNA-directed RNA polymerase subunit alpha compare
AO356_07190 -1.2 -1.9 hypothetical protein compare
AO356_15325 -1.2 -1.9 hypothetical protein compare
AO356_29710 -1.2 -2.4 xylose isomerase compare
AO356_03405 -1.2 -2.5 serine acetyltransferase compare
AO356_09755 -1.2 -3.4 preprotein translocase subunit SecB compare
AO356_18590 -1.2 -2.0 hypothetical protein compare
AO356_05100 -1.2 -6.2 long-chain fatty acid--CoA ligase compare
AO356_22150 -1.2 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO356_16980 -1.2 -5.6 protoheme IX farnesyltransferase compare
AO356_09940 -1.2 -1.8 hypothetical protein compare
AO356_10145 -1.2 -1.8 molecular chaperone Hsp33 compare
AO356_25665 -1.2 -1.2 3-beta hydroxysteroid dehydrogenase compare
AO356_11400 -1.2 -4.6 glutamate:protein symporter compare
AO356_20850 -1.2 -2.7 hypothetical protein compare
AO356_04270 -1.2 -3.3 RNA polymerase subunit sigma-24 compare
AO356_22650 -1.2 -1.4 chemotaxis protein CheD compare
AO356_26685 -1.1 -2.5 phosphate import ATP-binding protein PstB compare
AO356_23130 -1.1 -1.8 hypothetical protein compare
AO356_23500 -1.1 -4.3 TetR family transcriptional regulator compare
AO356_00440 -1.1 -2.2 peptidylprolyl isomerase compare
AO356_08975 -1.1 -5.7 diguanylate cyclase compare
AO356_19720 -1.1 -5.8 branched-chain amino acid ABC transporter substrate-binding protein compare
AO356_02210 -1.1 -1.4 copper-binding protein compare
AO356_10445 -1.1 -1.7 serine protease compare
AO356_22680 -1.1 -1.9 chemotaxis protein CheY compare
AO356_13275 -1.1 -1.5 multidrug transporter compare
AO356_14445 -1.1 -1.9 lipoate--protein ligase compare
AO356_28910 -1.1 -1.2 LysR family transcriptional regulator compare
AO356_01255 -1.1 -5.1 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
AO356_06970 -1.1 -4.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_03420 -1.1 -4.1 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_24550 -1.1 -0.9 hypothetical protein compare
AO356_01240 -1.1 -2.4 glucarate dehydratase compare
AO356_26165 -1.1 -2.4 LysR family transcriptional regulator compare
AO356_27765 -1.1 -1.7 hypothetical protein compare
AO356_02005 -1.1 -1.3 hypothetical protein compare
AO356_19180 -1.1 -3.6 cobalamin synthase compare
AO356_16070 -1.1 -3.3 poly(A) polymerase compare
AO356_08670 -1.1 -1.5 N-acetylmuramoyl-L-alanine amidase compare
AO356_20520 -1.1 -1.0 oxidoreductase compare
AO356_29695 -1.1 -1.6 polysaccharide deacetylase compare
AO356_18805 -1.1 -1.2 magnesium transporter compare
AO356_08910 -1.0 -2.3 carbamoyltransferase compare
AO356_13655 -1.0 -2.7 hypothetical protein compare
AO356_05080 -1.0 -1.1 peptide deformylase compare
AO356_21135 -1.0 -2.6 class V aminotransferase compare
AO356_24160 -1.0 -3.0 formate dehydrogenase compare
AO356_19165 -1.0 -1.2 adenosylcobinamide kinase compare


Specific Phenotypes

For 38 genes in this experiment

For stress Sodium Chlorite in Pseudomonas fluorescens FW300-N2C3

For stress Sodium Chlorite across organisms