Experiment set4IT005 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium nitrate nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS23920 -5.6 -3.4 septation protein A compare
PFLU_RS19555 -4.5 -2.1 histidine phosphatase family protein compare
PFLU_RS20715 -4.4 -2.4 iron ABC transporter permease compare
PFLU_RS28695 -4.4 -7.3 phosphoglycerate dehydrogenase compare
PFLU_RS01645 -4.1 -16.7 S41 family peptidase compare
PFLU_RS13885 -4.0 -2.4 hypothetical protein compare
PFLU_RS03645 -3.8 -12.9 tetratricopeptide repeat protein compare
PFLU_RS02980 -3.6 -2.2 precorrin-8X methylmutase compare
PFLU_RS31755 -3.5 -1.3 hypothetical protein compare
PFLU_RS23445 -3.5 -3.4 DUF1003 domain-containing protein compare
PFLU_RS04070 -3.4 -3.4 peptide chain release factor 3 compare
PFLU_RS22595 -3.4 -2.3 OmpA family protein compare
PFLU_RS24330 -3.3 -4.0 phosphogluconate dehydratase compare
PFLU_RS23070 -3.3 -1.3 50S ribosomal protein L32 compare
PFLU_RS28645 -3.3 -13.7 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS02490 -3.3 -13.1 phosphoserine phosphatase SerB compare
PFLU_RS17060 -3.2 -1.9 monooxygenase compare
PFLU_RS14550 -3.2 -8.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS23590 -3.2 -2.6 gluconokinase compare
PFLU_RS31440 -3.2 -1.7 hypothetical protein compare
PFLU_RS22740 -3.1 -5.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS04715 -3.1 -6.7 D-alanine--D-alanine ligase compare
PFLU_RS10340 -3.0 -1.7 hypothetical protein compare
PFLU_RS23305 -3.0 -11.9 arginine N-succinyltransferase compare
PFLU_RS00535 -3.0 -3.0 DUF1127 domain-containing protein compare
PFLU_RS15205 -3.0 -2.4 ribose ABC transporter permease compare
PFLU_RS06320 -3.0 -3.6 OmpH family outer membrane protein compare
PFLU_RS23885 -3.0 -2.8 transposase compare
PFLU_RS09055 -2.9 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS23065 -2.9 -11.1 phosphate acyltransferase PlsX compare
PFLU_RS08625 -2.9 -4.3 molybdenum cofactor biosynthesis protein B compare
PFLU_RS12975 -2.9 -5.7 DUF934 domain-containing protein compare
PFLU_RS18505 -2.8 -12.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS02775 -2.8 -1.4 urease accessory protein UreF compare
PFLU_RS01620 -2.8 -10.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS31830 -2.8 -1.1 hypothetical protein compare
PFLU_RS30160 -2.8 -3.7 ParB/RepB/Spo0J family partition protein compare
PFLU_RS13120 -2.7 -1.6 hypothetical protein compare
PFLU_RS26545 -2.7 -9.2 sel1 repeat family protein compare
PFLU_RS22190 -2.7 -1.0 hypothetical protein compare
PFLU_RS29515 -2.6 -9.4 RidA family protein compare
PFLU_RS01605 -2.6 -7.0 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS24125 -2.6 -8.2 cold-shock protein compare
PFLU_RS29875 -2.6 -11.8 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS01610 -2.6 -9.9 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28965 -2.5 -9.2 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS01965 -2.5 -1.6 ATP-dependent protease subunit HslV compare
PFLU_RS02765 -2.5 -2.0 HupE/UreJ family protein compare
PFLU_RS05050 -2.5 -3.0 response regulator transcription factor compare
PFLU_RS25760 -2.5 -10.5 glucose-6-phosphate isomerase compare
PFLU_RS22250 -2.4 -2.7 hypothetical protein compare
PFLU_RS29885 -2.4 -7.2 LysR family transcriptional regulator compare
PFLU_RS31530 -2.4 -0.9 transposase compare
PFLU_RS00415 -2.3 -1.6 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS12980 -2.3 -8.7 nitrite/sulfite reductase compare
PFLU_RS16710 -2.3 -3.5 nitrite reductase small subunit NirD compare
PFLU_RS01690 -2.3 -5.7 nitrogen regulation protein NR(II) compare
PFLU_RS29880 -2.3 -9.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS25360 -2.3 -6.8 glutamate 5-kinase compare
PFLU_RS29275 -2.3 -6.1 DUF484 family protein compare
PFLU_RS25025 -2.3 -2.7 hypothetical protein compare
PFLU_RS00190 -2.2 -2.0 DUF883 domain-containing protein compare
PFLU_RS28535 -2.2 -11.2 dihydroxy-acid dehydratase compare
PFLU_RS25735 -2.2 -8.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS21575 -2.2 -2.2 pyrimidine/purine nucleoside phosphorylase compare
PFLU_RS08860 -2.2 -2.2 2-hydroxy-3-oxopropionate reductase compare
PFLU_RS01685 -2.2 -3.2 nitrogen regulation protein NR(I) compare
PFLU_RS20690 -2.2 -3.2 hypothetical protein compare
PFLU_RS03075 -2.2 -1.9 translation initiation factor Sui1 compare
PFLU_RS31290 -2.2 -1.7 EamA family transporter compare
PFLU_RS25640 -2.1 -9.1 ketol-acid reductoisomerase compare
PFLU_RS30165 -2.1 -8.3 ParA family protein compare
PFLU_RS28655 -2.1 -10.0 HAD family hydrolase compare
PFLU_RS13540 -2.1 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS18175 -2.1 -1.9 sugar ABC transporter substrate-binding protein compare
PFLU_RS01900 -2.1 -6.1 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS00175 -2.1 -8.0 tryptophan synthase subunit alpha compare
PFLU_RS04470 -2.1 -8.5 histidinol dehydrogenase compare
PFLU_RS13010 -2.1 -5.2 Fe-S biogenesis protein NfuA compare
PFLU_RS30900 -2.1 -1.2 hypothetical protein compare
PFLU_RS27365 -2.1 -6.3 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS18420 -2.1 -2.4 hypothetical protein compare
PFLU_RS22575 -2.0 -5.6 ANTAR domain-containing protein conserved
PFLU_RS22105 -2.0 -4.8 cysteine synthase CysM compare
PFLU_RS24095 -2.0 -2.3 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS03770 -1.9 -8.0 sulfate adenylyltransferase subunit CysN compare
PFLU_RS19165 -1.9 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS00195 -1.9 -1.9 dodecin domain-containing protein compare
PFLU_RS18530 -1.9 -4.8 DNA translocase FtsK compare
PFLU_RS18735 -1.9 -1.2 hypothetical protein compare
PFLU_RS24085 -1.9 -3.7 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS08575 -1.9 -1.9 hypothetical protein compare
PFLU_RS16715 -1.9 -6.6 nitrite reductase large subunit conserved
PFLU_RS15165 -1.9 -2.1 RidA family protein compare
PFLU_RS11505 -1.8 -2.1 ABC transporter substrate-binding protein compare
PFLU_RS06265 -1.8 -12.0 [protein-PII] uridylyltransferase compare
PFLU_RS06055 -1.8 -1.2 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS03765 -1.8 -7.5 sulfate adenylyltransferase subunit CysD compare
PFLU_RS04150 -1.8 -4.1 DUF1043 family protein compare
PFLU_RS01500 -1.8 -2.5 cell division protein FtsQ compare
PFLU_RS08505 -1.8 -5.3 protease HtpX compare
PFLU_RS04325 -1.8 -11.1 ribonuclease G compare
PFLU_RS25755 -1.8 -4.0 pantoate--beta-alanine ligase compare
PFLU_RS21300 -1.8 -4.4 cysteine hydrolase compare
PFLU_RS29095 -1.8 -12.2 polyphosphate kinase 1 compare
PFLU_RS04465 -1.8 -5.0 ATP phosphoribosyltransferase compare
PFLU_RS29310 -1.8 -1.1 accessory factor UbiK family protein compare
PFLU_RS16785 -1.8 -1.3 GAF domain-containing protein compare
PFLU_RS07935 -1.8 -2.6 type 1 fimbrial protein compare
PFLU_RS30555 -1.8 -1.6 hypothetical protein compare
PFLU_RS07725 -1.7 -4.0 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS07275 -1.7 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS18635 -1.7 -2.9 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS22325 -1.7 -6.1 cytochrome-c oxidase, cbb3-type subunit II compare
PFLU_RS08350 -1.7 -1.5 ABC transporter ATP-binding protein compare
PFLU_RS24485 -1.7 -6.3 hypothetical protein compare
PFLU_RS25815 -1.7 -1.6 transcription termination/antitermination protein NusA compare
PFLU_RS29290 -1.7 -3.0 hypothetical protein compare
PFLU_RS04935 -1.7 -3.9 cyclic pyranopterin monophosphate synthase MoaC compare
PFLU_RS23725 -1.7 -8.0 glucose-6-phosphate dehydrogenase compare
PFLU_RS25225 -1.7 -5.3 disulfide bond formation protein B compare
PFLU_RS23310 -1.7 -6.8 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS11380 -1.7 -1.3 sarcosine oxidase subunit delta compare
PFLU_RS02455 -1.6 -2.1 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS29400 -1.6 -1.3 DUF1127 domain-containing protein compare
PFLU_RS19635 -1.6 -1.9 SDR family oxidoreductase compare
PFLU_RS23585 -1.6 -5.2 GntP family permease compare
PFLU_RS11720 -1.6 -2.0 hypothetical protein compare
PFLU_RS28165 -1.6 -7.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS25730 -1.6 -9.4 PAS domain S-box protein compare
PFLU_RS15790 -1.6 -2.5 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS02150 -1.6 -2.2 acyl carrier protein compare
PFLU_RS14050 -1.6 -1.1 hypothetical protein compare
PFLU_RS12210 -1.6 -2.4 hypothetical protein compare
PFLU_RS04780 -1.6 -1.0 hypothetical protein compare
PFLU_RS19520 -1.6 -2.3 substrate-binding domain-containing protein compare
PFLU_RS12615 -1.6 -2.5 oxidoreductase compare
PFLU_RS27645 -1.6 -7.2 8-amino-7-oxononanoate synthase compare
PFLU_RS04945 -1.5 -1.9 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS08585 -1.5 -2.7 DUF883 domain-containing protein compare
PFLU_RS25585 -1.5 -1.0 exodeoxyribonuclease V subunit alpha compare
PFLU_RS20390 -1.5 -2.4 DUF1654 domain-containing protein compare
PFLU_RS30730 -1.5 -1.5 helix-turn-helix domain-containing protein compare
PFLU_RS24025 -1.5 -5.6 quinolinate synthase NadA compare
PFLU_RS28690 -1.5 -6.6 FAD-binding oxidoreductase compare
PFLU_RS05885 -1.5 -4.6 recombinase RecA compare
PFLU_RS20540 -1.5 -5.8 phosphoribosylanthranilate isomerase compare
PFLU_RS02010 -1.5 -3.0 fimbriae biosynthesis protein compare
PFLU_RS14420 -1.5 -2.7 chemotactic transduction protein ChpE compare
PFLU_RS29550 -1.5 -5.2 ATP-dependent DNA helicase RecG compare
PFLU_RS08630 -1.4 -3.4 molybdopterin molybdotransferase MoeA compare
PFLU_RS20185 -1.4 -1.8 hypothetical protein compare
PFLU_RS28195 -1.4 -7.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS29555 -1.4 -5.9 HDOD domain-containing protein compare
PFLU_RS08385 -1.4 -2.2 PilZ domain-containing protein compare
PFLU_RS28265 -1.4 -1.7 malonate decarboxylase subunit delta compare
PFLU_RS23010 -1.4 -5.6 radical SAM protein compare
PFLU_RS19170 -1.4 -3.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS07810 -1.4 -7.8 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS20575 -1.4 -2.7 3-isopropylmalate dehydratase small subunit compare
PFLU_RS01315 -1.4 -2.0 Hsp33 family molecular chaperone HslO compare
PFLU_RS17045 -1.4 -2.9 SDR family oxidoreductase compare
PFLU_RS31535 -1.4 -1.5 hypothetical protein compare
PFLU_RS14005 -1.4 -1.6 hypothetical protein compare
PFLU_RS07525 -1.4 -1.0 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS05345 -1.4 -1.7 hypothetical protein compare
PFLU_RS28650 -1.4 -4.1 RNA pyrophosphohydrolase compare
PFLU_RS07215 -1.3 -4.0 hypothetical protein compare
PFLU_RS16580 -1.3 -2.4 hypothetical protein compare
PFLU_RS18620 -1.3 -4.1 NADH-quinone oxidoreductase subunit B compare
PFLU_RS06165 -1.3 -2.4 hypothetical protein compare
PFLU_RS12840 -1.3 -1.8 3-hydroxybutyrate dehydrogenase compare
PFLU_RS18670 -1.3 -1.7 NADH-quinone oxidoreductase subunit M compare
PFLU_RS07255 -1.3 -2.3 sulfurtransferase TusA family protein compare
PFLU_RS13610 -1.3 -1.7 ABC transporter ATP-binding protein compare
PFLU_RS18640 -1.3 -3.4 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS31805 -1.3 -0.9 hypothetical protein compare
PFLU_RS27440 -1.3 -3.3 nucleotidyltransferase family protein compare
PFLU_RS07225 -1.3 -6.8 L-aspartate oxidase compare
PFLU_RS05780 -1.3 -6.2 helix-turn-helix transcriptional regulator compare
PFLU_RS20515 -1.3 -3.6 amidophosphoribosyltransferase compare
PFLU_RS18645 -1.3 -1.8 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS03555 -1.3 -0.6 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS04660 -1.3 -2.9 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS10835 -1.2 -1.2 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS20510 -1.2 -5.9 O-succinylhomoserine sulfhydrylase compare
PFLU_RS29990 -1.2 -3.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS11760 -1.2 -1.6 GlxA family transcriptional regulator compare
PFLU_RS03600 -1.2 -2.4 hypothetical protein compare
PFLU_RS07665 -1.2 -0.8 type I DNA topoisomerase compare
PFLU_RS18725 -1.2 -1.0 alpha/beta hydrolase compare
PFLU_RS28390 -1.2 -4.9 methionine biosynthesis protein MetW compare
PFLU_RS00180 -1.2 -4.1 tryptophan synthase subunit beta compare
PFLU_RS07785 -1.2 -5.8 VacJ family lipoprotein compare
PFLU_RS18515 -1.2 -1.4 fluoride efflux transporter CrcB compare
PFLU_RS15610 -1.2 -3.3 helix-turn-helix transcriptional regulator compare
PFLU_RS02590 -1.2 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS18625 -1.2 -5.0 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS03610 -1.2 -3.4 redox-regulated ATPase YchF compare
PFLU_RS17660 -1.2 -2.6 DUF2946 domain-containing protein compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For nitrogen source D-Glucose across organisms