Experiment set4IT005 for Shewanella loihica PV-4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Shew_1601 +2.6 8.8 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_2049 +2.6 18.1 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_0296 +2.3 5.9 heat shock protein Hsp20 (RefSeq) compare
Shew_0755 +2.2 14.7 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_1602 +2.2 10.2 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_1058 +2.2 12.0 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_2572 +2.2 14.4 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_1013 +1.8 14.5 aspartate carbamoyltransferase (RefSeq) compare
Shew_1563 +1.8 12.9 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_1298 guaA +1.7 13.0 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_3487 pyrE +1.6 11.9 orotate phosphoribosyltransferase (RefSeq) compare
Shew_1341 +1.6 9.3 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_0383 +1.6 9.0 malate dehydrogenase (RefSeq) compare
Shew_1224 +1.6 12.5 sodium:dicarboxylate symporter (RefSeq) compare
Shew_1202 +1.5 8.0 (p)ppGpp synthetase I, SpoT/RelA (RefSeq) compare
Shew_3500 +1.5 4.2 putative endoribonuclease L-PSP (RefSeq) compare
Shew_0728 +1.5 13.7 dihydroorotase (RefSeq) compare
Shew_3660 +1.4 11.5 glutathione reductase (RefSeq) compare
Shew_2642 +1.4 5.7 flavodoxin (RefSeq) compare
Shew_2000 +1.4 2.6 glyceraldehyde-3-phosphate dehydrogenase (RefSeq) compare
Shew_3682 +1.3 9.5 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_3681 +1.3 11.5 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_3410 +1.3 9.0 permease (RefSeq) compare
Shew_2839 +1.3 11.6 carbamoyl phosphate synthase small subunit (RefSeq) compare
Shew_2174 +1.3 3.1 fatty acid metabolism regulator (RefSeq) compare
Shew_2838 carB +1.3 11.0 carbamoyl phosphate synthase large subunit (RefSeq) compare
Shew_3295 +1.3 8.8 AFG1 family ATPase (RefSeq) compare
Shew_3499 +1.3 6.1 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Shew_1819 +1.2 5.3 GntR family transcriptional regulator (RefSeq) compare
Shew_2667 +1.2 8.3 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_0421 +1.2 1.4 phage shock protein C, PspC (RefSeq) compare
Shew_1092 +1.2 5.5 amino acid carrier protein (RefSeq) compare
Shew_2668 +1.2 6.9 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_2666 +1.2 9.4 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_2665 +1.1 9.2 beta-ketoacyl synthase (RefSeq) compare
Shew_0127 +1.1 5.3 LexA repressor (RefSeq) compare
Shew_3709 +1.1 9.3 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_2664 +1.1 6.9 transcriptional regulator, putative (RefSeq) compare
Shew_2656 +1.1 6.6 4'-phosphopantetheinyl transferase (RefSeq) compare
Shew_1713 +1.1 3.7 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_2409 +1.1 4.5 short chain dehydrogenase (RefSeq) compare
Shew_2558 +1.0 4.0 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) compare
Shew_3710 tdh +1.0 8.0 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_1865 +1.0 5.3 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_1867 +1.0 4.1 hypothetical protein (RefSeq) compare
Shew_1810 +1.0 6.3 dihydroorotate dehydrogenase 2 (RefSeq) compare
Shew_3336 +1.0 1.7 MarR family transcriptional regulator (RefSeq) compare
Shew_1422 +1.0 0.8 sulfate adenylyltransferase subunit 2 (RefSeq) compare
Shew_2571 +1.0 6.2 propionyl-CoA carboxylase (RefSeq) compare
Shew_0469 +1.0 1.0 pentapeptide repeat-containing protein (RefSeq) compare
Shew_3225 +1.0 5.2 glutathione synthetase (RefSeq) compare
Shew_0763 +0.9 4.3 putative PAS/PAC sensor protein (RefSeq) compare
Shew_2573 +0.9 8.8 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_3267 +0.9 4.6 sodium/hydrogen exchanger (RefSeq) compare
Shew_3522 +0.9 2.3 hypothetical protein (RefSeq) compare
Shew_3708 +0.9 5.2 TetR family transcriptional regulator (RefSeq) compare
Shew_2410 +0.9 1.0 beta-ketoacyl synthase (RefSeq) compare
Shew_2320 +0.9 6.4 RNA methyltransferase (RefSeq) compare
Shew_1050 +0.9 5.6 sigma E regulatory protein, MucB/RseB (RefSeq) compare
Shew_0282 +0.9 4.5 phospholipid/glycerol acyltransferase (RefSeq) compare
Shew_1716 +0.9 2.0 3-beta hydroxysteroid dehydrogenase/isomerase (RefSeq) compare
Shew_0097 +0.9 5.0 two component transcriptional regulator (RefSeq) compare
Shew_0698 +0.8 4.4 Na+/H+ antiporter NhaC (RefSeq) compare
Shew_2895 +0.8 3.9 2-dehydropantoate 2-reductase (RefSeq) compare
Shew_1714 +0.8 2.2 alpha/beta hydrolase fold (RefSeq) compare
Shew_3189 +0.8 5.0 hypothetical protein (RefSeq) compare
Shew_0799 +0.8 2.4 MarR family transcriptional regulator (RefSeq) compare
Shew_1146 +0.8 3.6 hypothetical protein (RefSeq) compare
Shew_1073 +0.8 1.2 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) compare
Shew_2906 +0.8 0.9 hypothetical protein (RefSeq) compare
Shew_0098 +0.8 4.0 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1820 prpB +0.8 4.5 2-methylisocitrate lyase (RefSeq) compare
Shew_2576 +0.8 3.7 3-oxoacid CoA-transferase, B subunit (RefSeq) compare
Shew_0546 +0.8 2.3 hypothetical protein (RefSeq) compare
Shew_2115 +0.8 4.4 lytic transglycosylase, catalytic (RefSeq) compare
Shew_2022 +0.8 0.9 recombination factor protein RarA (RefSeq) compare
Shew_0534 +0.7 3.5 major facilitator transporter (RefSeq) compare
Shew_1078 +0.7 5.8 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_2258 +0.7 1.2 NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (RefSeq) compare
Shew_1926 +0.7 1.9 transketolase, central region (RefSeq) compare
Shew_3442 +0.7 0.8 hypothetical protein (RefSeq) compare
Shew_2556 +0.7 2.0 acyl-CoA thioesterase II (RefSeq) compare
Shew_3521 +0.7 3.3 tryptophan halogenase (RefSeq) compare
Shew_2544 +0.7 2.2 phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq) compare
Shew_1782 +0.7 2.5 MarR family transcriptional regulator (RefSeq) compare
Shew_1227 +0.7 1.5 glutamate--cysteine ligase (RefSeq) compare
Shew_0086 +0.7 5.9 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_1156 +0.7 1.1 hypothetical protein (RefSeq) compare
Shew_1927 +0.7 0.9 dihydrolipoamide acetyltransferase (RefSeq) compare
Shew_2061 +0.7 1.3 radical SAM domain-containing protein (RefSeq) compare
Shew_3432 pdhR +0.7 2.8 transcriptional regulator PdhR (RefSeq) compare
Shew_1186 +0.7 1.2 transcriptional regulator NrdR (RefSeq) compare
Shew_1080 +0.7 1.7 homoserine kinase (RefSeq) compare
Shew_3273 +0.7 4.6 hypothetical protein (RefSeq) compare
Shew_1090 +0.7 1.4 OmpA/MotB domain-containing protein (RefSeq) compare
Shew_1812 +0.7 4.3 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Shew_1809 +0.7 4.0 NAD-glutamate dehydrogenase (RefSeq) compare
Shew_1769 +0.7 1.0 NapD family protein (RefSeq) compare
Shew_2775 +0.7 1.7 MATE efflux family protein (RefSeq) compare
Shew_2194 +0.7 0.8 hypothetical protein (RefSeq) compare
Shew_1437 +0.7 4.8 transcriptional regulator, TyrR (RefSeq) compare
Shew_1577 +0.6 0.7 aminotransferase, class IV (RefSeq) compare
Shew_3814 +0.6 4.1 naphthoate synthase (RefSeq) compare
Shew_0615 +0.6 4.1 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq) compare
Shew_1389 +0.6 1.0 cobyrinic acid a,c-diamide synthase (RefSeq) compare
Shew_3664 +0.6 4.7 alpha-L-glutamate ligase (RefSeq) compare
Shew_2785 +0.6 0.8 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_3054 +0.6 1.1 hypothetical protein (RefSeq) compare
Shew_2570 +0.6 5.2 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_0756 +0.6 1.7 hypothetical protein (RefSeq) compare
Shew_0640 +0.6 1.2 TPR repeat-containing protein (RefSeq) compare
Shew_2795 +0.6 4.4 xanthine/uracil/vitamin C permease (RefSeq) compare
Shew_3610 +0.6 0.9 general secretion pathway M protein (RefSeq) compare
Shew_3513 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_1391 +0.6 1.1 CheW protein (RefSeq) compare
Shew_3467 +0.6 2.7 hypothetical protein (RefSeq) compare
Shew_1841 +0.6 0.9 peptidase M48, Ste24p (RefSeq) compare
Shew_0411 +0.6 4.1 outer membrane efflux protein (RefSeq) compare
Shew_1932 cls +0.6 4.0 cardiolipin synthetase (RefSeq) compare
Shew_3602 +0.6 5.0 O-succinylbenzoate-CoA ligase (RefSeq) compare
Shew_1231 +0.6 1.2 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) compare
Shew_3431 aceE +0.6 4.2 pyruvate dehydrogenase subunit E1 (RefSeq) compare
Shew_0594 +0.6 2.5 hypothetical protein (RefSeq) compare
Shew_2584 +0.6 3.8 electron transfer flavoprotein beta-subunit (RefSeq) compare
Shew_2359 +0.6 0.5 uracil-DNA glycosylase superfamily protein (RefSeq) compare
Shew_3131 +0.6 3.3 poly(A) polymerase (RefSeq) compare
Shew_1213 +0.6 1.1 RpoD family RNA polymerase sigma factor (RefSeq) compare
Shew_1920 +0.6 3.3 alpha/beta hydrolase fold (RefSeq) compare
Shew_2087 +0.6 1.9 hypothetical protein (RefSeq) compare
Shew_2907 +0.6 0.9 invasion gene expression up-regulator, SirB (RefSeq) compare
Shew_3598 +0.6 0.8 AsnC family transcriptional regulator (RefSeq) compare
Shew_3540 +0.6 3.1 NapC/NirT cytochrome c domain-containing protein (RefSeq) compare
Shew_0316 +0.6 3.6 protein of unknown function DUF513, hemX (RefSeq) compare
Shew_1574 +0.6 2.8 ATP-binding Mrp/Nbp35 family protein (RefSeq) compare
Shew_1470 +0.6 3.5 sulfatase (RefSeq) compare
Shew_3718 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_3268 +0.5 1.4 hypothetical protein (RefSeq) compare
Shew_2890 +0.5 1.2 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_1273 +0.5 0.9 hypothetical protein (RefSeq) compare
Shew_3498 rpoZ +0.5 2.3 DNA-directed RNA polymerase subunit omega (RefSeq) compare
Shew_2402 +0.5 0.6 ABC transporter-related protein (RefSeq) compare
Shew_3266 dipZ +0.5 1.3 thiol:disulfide interchange protein precursor (RefSeq) compare
Shew_0585 +0.5 1.3 cAMP-regulatory protein (RefSeq) compare
Shew_1878 +0.5 0.7 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_2514 +0.5 1.0 tRNA--hydroxylase (RefSeq) compare
Shew_2228 +0.5 3.5 inosine kinase (RefSeq) compare
Shew_1230 +0.5 1.7 phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq) compare
Shew_1216 +0.5 2.1 regulatory protein RecX (RefSeq) compare
Shew_2429 +0.5 0.6 hypothetical protein (RefSeq) compare
Shew_1898 +0.5 1.4 ApbE family lipoprotein (RefSeq) compare
Shew_3063 +0.5 0.9 glycine cleavage system protein H (RefSeq) compare
Shew_1483 +0.5 2.0 hypothetical protein (RefSeq) compare
Shew_2509 tig +0.5 3.0 trigger factor (RefSeq) compare
Shew_2006 +0.5 1.7 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_0618 +0.5 0.8 hypothetical protein (RefSeq) compare
Shew_0667 +0.5 1.1 phosphoadenosine phosphosulfate reductase (RefSeq) compare
Shew_1444 +0.5 0.8 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) compare
Shew_0206 +0.5 4.1 argininosuccinate lyase (RefSeq) compare
Shew_2037 +0.5 1.1 MATE efflux family protein (RefSeq) compare
Shew_1315 +0.5 1.4 hypothetical protein (RefSeq) compare
Shew_1840 +0.5 2.7 arsenate reductase (RefSeq) compare
Shew_2837 +0.5 0.8 transcription elongation factor GreA (RefSeq) compare
Shew_0695 +0.5 1.0 hypothetical protein (RefSeq) compare
Shew_3599 +0.5 3.9 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase (RefSeq) compare
Shew_0830 +0.5 1.0 LrgB family protein (RefSeq) compare
Shew_1644 +0.5 0.6 DSBA oxidoreductase (RefSeq) compare
Shew_2406 +0.5 1.0 AraC family transcriptional regulator (RefSeq) compare
Shew_3347 +0.5 2.0 hypothetical protein (RefSeq) compare
Shew_1942 +0.5 1.8 NADH:flavin oxidoreductase/NADH oxidase (RefSeq) compare
Shew_3167 +0.4 1.6 hypothetical protein (RefSeq) compare
Shew_1145 +0.4 1.9 translation initiation factor Sui1 (RefSeq) compare
Shew_3434 +0.4 3.7 N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) compare
Shew_3195 +0.4 0.7 hypothetical protein (RefSeq) compare
Shew_3488 +0.4 1.3 ribonuclease PH (RefSeq) compare
Shew_2176 +0.4 0.6 disulphide bond formation protein DsbB (RefSeq) compare
Shew_0281 +0.4 2.9 phospholipid/glycerol acyltransferase (RefSeq) compare
Shew_0330 +0.4 0.5 nifR3 family TIM-barrel protein (RefSeq) compare
Shew_1559 +0.4 0.5 hypothetical protein (RefSeq) compare
Shew_3378 +0.4 1.1 Sec-independent protein translocase, TatC subunit (RefSeq) compare
Shew_2698 +0.4 1.4 hypothetical protein (RefSeq) compare
Shew_1386 +0.4 1.7 CheA signal transduction histidine kinase (RefSeq) compare
Shew_1021 +0.4 3.6 peptidase M23B (RefSeq) compare
Shew_0843 +0.4 2.9 nitrate/nitrite sensor protein NarQ (RefSeq) compare
Shew_0440 +0.4 2.3 methyltransferase type 12 (RefSeq) compare
Shew_1519 +0.4 1.3 hypothetical protein (RefSeq) compare
Shew_1962 +0.4 1.5 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) compare
Shew_3755 +0.4 1.3 thioesterase superfamily protein (RefSeq) compare
Shew_3677 +0.4 3.6 isochorismate synthase (RefSeq) compare
Shew_1732 +0.4 1.5 hypothetical protein (RefSeq) compare
Shew_1925 +0.4 1.9 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (RefSeq) compare
Shew_0666 +0.4 1.3 sulfite reductase subunit beta (RefSeq) compare
Shew_2341 +0.4 0.8 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_2264 +0.4 1.1 hypothetical protein (RefSeq) compare
Shew_1287 +0.4 1.5 hypothetical protein (RefSeq) compare
Shew_2350 +0.4 1.0 2OG-Fe(II) oxygenase (RefSeq) compare
Shew_1295 +0.4 1.8 hypothetical protein (RefSeq) compare
Shew_3271 +0.4 2.0 galactokinase (RefSeq) compare
Shew_1463 +0.4 2.2 AraC family transcriptional regulator (RefSeq) compare
Shew_3064 gcvT +0.4 3.3 glycine cleavage system aminomethyltransferase T (RefSeq) compare
Shew_2654 queF +0.4 0.8 7-cyano-7-deazaguanine reductase (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in lb experiments