Experiment set4IT005 for Methanococcus maripaludis S2

Compare to:

H2 deepwell vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS03315 -3.7 -1.5 ferrous iron transport protein A compare
MMP_RS02280 -3.2 -0.9 DUF211 domain-containing protein compare
MMP_RS01795 -3.1 -1.8 methanogenesis marker 6 protein compare
MMP_RS04890 -3.1 -0.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS02240 -3.1 -3.5 methanogenesis marker 7 protein compare
MMP_RS01005 -2.8 -1.5 riboflavin synthase compare
MMP_RS03600 -2.8 -2.7 triose-phosphate isomerase compare
MMP_RS07380 -2.6 -2.6 transcription elongation factor Spt5 compare
MMP_RS06120 -2.6 -2.2 UPF0147 family protein compare
MMP_RS08300 -2.5 -1.0 metal-sulfur cluster assembly factor compare
MMP_RS02900 -2.5 -0.7 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07630 -2.5 -1.4 ATP-binding cassette domain-containing protein compare
MMP_RS07545 -2.5 -1.1 HTH domain-containing protein compare
MMP_RS07845 -2.5 -2.7 LL-diaminopimelate aminotransferase compare
MMP_RS06355 -2.5 -2.4 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS05515 -2.4 -8.4 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01545 -2.4 -1.1 CBS domain-containing protein compare
MMP_RS00300 -2.4 -0.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07005 -2.3 -0.7 4Fe-4S binding protein compare
MMP_RS03015 -2.3 -11.0 GTP 3' 8-cyclase MoaA compare
MMP_RS06625 -2.2 -2.0 DNA primase compare
MMP_RS06315 -2.1 -1.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS08745 -2.1 -7.6 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07735 -2.1 -0.8 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS04605 -2.1 -4.7 cobalt ECF transporter T component CbiQ compare
MMP_RS06895 -2.0 -2.0 selenocysteine-specific translation elongation factor compare
MMP_RS01220 -2.0 -8.9 hypothetical protein compare
MMP_RS01225 -2.0 -5.6 DUF5379 domain-containing protein compare
MMP_RS06350 -2.0 -6.4 HesA/MoeB/ThiF family protein compare
MMP_RS04615 -2.0 -3.9 PDGLE domain-containing protein compare
MMP_RS08790 -2.0 -1.5 translation initiation factor IF-2 subunit alpha compare
MMP_RS03400 -2.0 -2.7 archease compare
MMP_RS00110 -2.0 -2.7 hypothetical protein compare
MMP_RS07635 -1.9 -5.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS00685 -1.9 -3.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS02135 -1.9 -4.5 DUF5612 domain-containing protein compare
MMP_RS07750 -1.9 -4.3 DUF357 domain-containing protein compare
MMP_RS01610 -1.9 -3.0 hypothetical protein compare
MMP_RS03025 -1.9 -5.5 molybdenum cofactor guanylyltransferase compare
MMP_RS04620 -1.9 -10.3 cobalt transporter CbiM compare
MMP_RS01265 -1.9 -3.2 hypothetical protein compare
MMP_RS07730 -1.8 -1.9 pyruvate synthase subunit beta compare
MMP_RS09020 -1.8 -1.5 hypothetical protein compare
MMP_RS03035 -1.8 -3.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS08720 -1.8 -1.2 4Fe-4S binding protein compare
MMP_RS01175 -1.8 -3.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04685 -1.8 -3.1 DUF126 domain-containing protein compare
MMP_RS05425 -1.8 -5.0 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS04500 -1.8 -12.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS06925 -1.8 -1.9 ribonuclease VapC4 compare
MMP_RS08095 -1.8 -7.5 dethiobiotin synthase compare
MMP_RS05930 -1.7 -2.2 3-isopropylmalate dehydratase large subunit compare
MMP_RS08210 -1.7 -1.8 phosphatidylglycerophosphatase A compare
MMP_RS08100 -1.7 -4.9 8-amino-7-oxononanoate synthase compare
MMP_RS08650 -1.7 -2.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06730 -1.7 -2.0 phosphopantothenate/pantothenate synthetase compare
MMP_RS02875 -1.7 -9.3 chorismate pyruvate-lyase family protein compare
MMP_RS02195 -1.7 -3.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01020 -1.7 -0.9 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06130 -1.7 -3.8 peptidylprolyl isomerase compare
MMP_RS06400 -1.7 -1.6 4Fe-4S binding protein compare
MMP_RS03640 -1.7 -3.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS04780 -1.7 -2.7 ribonuclease P compare
MMP_RS07575 -1.7 -3.0 RNA ligase partner protein compare
MMP_RS06370 -1.6 -4.7 biotin synthase BioB compare
MMP_RS01800 -1.6 -3.7 TIGR00303 family protein compare
MMP_RS00810 -1.6 -7.9 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS05920 -1.6 -0.5 50S ribosomal protein L37e compare
MMP_RS03700 -1.6 -8.1 sodium:proton antiporter compare
MMP_RS02800 -1.6 -5.9 nucleotidyltransferase domain-containing protein compare
MMP_RS04775 -1.6 -2.6 adenosylhomocysteinase compare
MMP_RS08820 -1.6 -4.2 hypothetical protein compare
MMP_RS02145 -1.5 -6.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS08105 -1.5 -6.0 6-carboxyhexanoate--CoA ligase compare
MMP_RS06340 -1.5 -7.0 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS08435 -1.5 -2.0 Era-like GTP-binding protein compare
MMP_RS00895 -1.5 -3.5 hypothetical protein compare
MMP_RS06475 -1.5 -4.2 FAD-dependent oxidoreductase compare
MMP_RS04585 -1.5 -6.9 AIR synthase related protein compare
MMP_RS02010 -1.5 -4.5 PHP domain-containing protein compare
MMP_RS05815 -1.5 -1.8 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS04720 -1.4 -2.3 DedA family protein compare
MMP_RS01830 -1.4 -1.4 tRNA-Val compare
MMP_RS03145 -1.4 -4.7 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS08635 -1.4 -1.5 UbiA family prenyltransferase compare
MMP_RS06700 -1.4 -7.8 hypothetical protein compare
MMP_RS07600 -1.4 -2.2 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01385 -1.4 -0.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS01700 -1.4 -0.9 dihydroxy-acid dehydratase compare
MMP_RS07645 -1.4 -5.1 aldehyde dehydrogenase family protein compare
MMP_RS06105 -1.4 -7.7 hydrogenase maturation peptidase HycI compare
MMP_RS05540 -1.4 -2.8 hypothetical protein compare
MMP_RS05430 -1.4 -5.3 TIGR00288 family NYN domain-containing protein compare
MMP_RS06230 -1.4 -2.0 helix-turn-helix domain-containing protein compare
MMP_RS07625 -1.4 -3.1 cobalt ECF transporter T component CbiQ compare
MMP_RS03445 -1.4 -0.8 methanogenesis marker 17 protein compare
MMP_RS06285 -1.4 -2.0 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06270 -1.4 -4.9 TIGR00300 family protein compare
MMP_RS02885 -1.4 -9.2 molybdopterin biosynthesis protein compare
MMP_RS02470 -1.4 -1.4 helix-turn-helix transcriptional regulator compare
MMP_RS03155 -1.3 -6.9 precorrin-6A reductase compare
MMP_RS07605 -1.3 -2.3 diadenylate cyclase compare
MMP_RS02355 -1.3 -1.7 30S ribosomal protein S27ae compare
MMP_RS06020 -1.3 -2.7 archaeoflavoprotein AfpA compare
MMP_RS06395 -1.3 -2.5 ThiF family adenylyltransferase compare
MMP_RS07390 -1.2 -1.4 cell division protein FtsZ compare
MMP_RS05555 -1.2 -1.0 DUF4040 domain-containing protein compare
MMP_RS03095 -1.2 -5.0 diphthine synthase compare
MMP_RS04955 -1.2 -5.8 DNA topoisomerase I compare
MMP_RS06295 -1.2 -3.5 methanogenesis marker 14 protein compare
MMP_RS05345 -1.2 -5.0 hypothetical protein compare
MMP_RS05245 -1.2 -6.9 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS07200 -1.2 -4.8 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01840 -1.2 -5.8 TIGR00289 family protein compare
MMP_RS07755 -1.2 -0.8 DUF555 domain-containing protein compare
MMP_RS08320 -1.2 -3.5 molybdopterin molybdotransferase MoeA compare
MMP_RS01900 -1.2 -8.0 hypothetical protein compare
MMP_RS00880 -1.2 -2.8 ribosome assembly RNA-binding protein YhbY compare
MMP_RS05265 -1.2 -1.8 2-isopropylmalate synthase compare
MMP_RS03250 -1.2 -2.5 MJ1244 family protein compare
MMP_RS01720 -1.2 -1.5 replication factor C large subunit compare
MMP_RS06980 -1.2 -5.2 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07385 -1.2 -1.4 protein translocase SEC61 complex subunit gamma compare
MMP_RS08715 -1.2 -1.4 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06885 -1.1 -1.5 50S ribosome-binding GTPase compare
MMP_RS07435 -1.1 -1.5 GMP synthase subunit A compare
MMP_RS02130 -1.1 -3.6 zinc metalloprotease HtpX compare
MMP_RS00130 -1.1 -0.9 nickel-responsive transcriptional regulator NikR compare
MMP_RS00985 -1.1 -3.8 CDC48 family AAA ATPase compare
MMP_RS03435 -1.1 -1.3 ketol-acid reductoisomerase compare
MMP_RS08350 -1.1 -0.7 hypothetical protein compare
MMP_RS01960 -1.1 -0.5 hypothetical protein compare
MMP_RS05525 -1.1 -3.8 calcium/sodium antiporter compare
MMP_RS04090 -1.1 -2.2 hypothetical protein compare
MMP_RS07420 -1.1 -3.8 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS05845 -1.1 -1.1 tRNA-intron lyase compare
MMP_RS06685 -1.1 -6.6 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06600 -1.1 -1.0 class III signal peptide-containing protein compare
MMP_RS03140 -1.1 -5.8 hypothetical protein compare
MMP_RS04850 -1.1 -8.3 UPF0254 family protein compare
MMP_RS05250 -1.1 -0.9 NFYB/HAP3 family transcription factor subunit compare
MMP_RS01755 -1.1 -0.7 DUF2097 domain-containing protein compare
MMP_RS06725 -1.0 -4.4 hypothetical protein compare
MMP_RS01895 -1.0 -6.3 flippase compare
MMP_RS03960 -1.0 -0.5 hypothetical protein compare
MMP_RS08330 -1.0 -3.9 NADH-quinone oxidoreductase subunit H compare
MMP_RS08600 -1.0 -1.7 flagellar protein D compare
MMP_RS05640 -1.0 -4.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS08645 -1.0 -3.5 UPF0179 family protein compare
MMP_RS03205 -1.0 -0.8 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS02235 -1.0 -3.4 CBS domain-containing protein compare
MMP_RS06215 -1.0 -1.9 30S ribosomal protein S6e compare
MMP_RS07425 -1.0 -3.7 GTP-binding protein compare
MMP_RS07195 -1.0 -5.7 M20 family metallo-hydrolase compare
MMP_RS02165 -1.0 -4.2 tRNA-dihydrouridine synthase compare
MMP_RS01725 -1.0 -2.3 class I SAM-dependent methyltransferase family protein compare
MMP_RS00115 -0.9 -5.7 radical SAM protein compare
MMP_RS02930 -0.9 -2.0 class I SAM-dependent methyltransferase compare
MMP_RS03580 -0.9 -2.0 signal recognition particle-docking protein FtsY compare
MMP_RS01045 -0.9 -4.4 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS07710 -0.9 -3.7 cell division protein FtsZ compare
MMP_RS07620 -0.9 -3.4 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS08840 -0.9 -5.8 class I SAM-dependent methyltransferase compare
MMP_RS02245 -0.9 -2.1 hypothetical protein compare
MMP_RS01985 -0.9 -3.4 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS03120 -0.9 -2.2 hypothetical protein compare
MMP_RS06855 -0.9 -5.8 hypothetical protein compare
MMP_RS03100 -0.9 -1.8 hypothetical protein compare
MMP_RS01665 -0.9 -1.7 DUF2111 domain-containing protein compare
MMP_RS05925 -0.9 -2.4 small nuclear ribonucleoprotein compare
MMP_RS00725 -0.9 -4.2 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS01875 -0.9 -5.6 N-acetyltransferase compare
MMP_RS05635 -0.9 -5.0 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS05460 -0.9 -5.3 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS06035 -0.9 -5.8 glycosyltransferase family 2 protein compare
MMP_RS07350 -0.9 -1.2 preprotein translocase subunit Sec61beta compare
MMP_RS07615 -0.9 -2.7 energy-coupling factor ABC transporter permease compare
MMP_RS00720 -0.9 -3.1 metal-dependent hydrolase compare
MMP_RS00120 -0.9 -2.3 LysR family transcriptional regulator compare
MMP_RS06630 -0.9 -0.6 UPF0058 family protein compare
MMP_RS01880 -0.8 -3.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS08335 -0.8 -3.6 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS06865 -0.8 -1.7 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS03065 -0.8 -1.0 AzlC family ABC transporter permease compare
MMP_RS03475 -0.8 -0.3 hypothetical protein compare
MMP_RS03490 -0.8 -0.9 DUF2115 domain-containing protein compare
MMP_RS05315 -0.8 -1.2 hypothetical protein compare
MMP_RS08360 -0.8 -1.7 hypothetical protein compare
MMP_RS02495 -0.8 -1.5 hypothetical protein compare
MMP_RS04200 -0.8 -3.1 DUF111 family protein compare
MMP_RS01500 -0.8 -1.0 CBS domain-containing protein compare
MMP_RS06840 -0.8 -0.5 DNA-directed RNA polymerase subunit N compare
MMP_RS02595 -0.8 -0.8 putative zinc-binding protein compare
MMP_RS06930 -0.8 -5.2 MBL fold metallo-hydrolase compare
MMP_RS05580 -0.8 -6.1 glycosyltransferase compare
MMP_RS08595 -0.8 -0.6 flagellar protein C compare
MMP_RS08605 -0.8 -2.6 flagellar protein E compare
MMP_RS01905 -0.8 -4.5 glycosyltransferase compare
MMP_RS05800 -0.8 -4.5 B12-binding domain-containing radical SAM protein compare
MMP_RS01600 -0.8 -1.2 50S ribosomal protein L15e compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms