Experiment set4IT005 for Methanococcus maripaludis JJ

Compare to:

H2 N-free with 2mM Adenosine

200 most important genes:

  gene name fitness t score description  
MMJJ_RS02035 -3.1 -3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS08870 -3.0 -0.9 2-isopropylmalate synthase compare
MMJJ_RS03295 -3.0 -8.1 PHP domain-containing protein compare
MMJJ_RS06000 -2.9 -2.0 cation:proton antiporter subunit C compare
MMJJ_RS02055 -2.8 -6.0 GTP 3',8-cyclase MoaA compare
MMJJ_RS02935 -2.7 -1.9 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS00265 -2.6 -2.5 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS08035 -2.6 -2.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS08520 -2.6 -1.8 peptidylprolyl isomerase compare
MMJJ_RS05065 -2.5 -1.8 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS08855 -2.4 -1.8 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS07995 -2.4 -3.3 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS06150 -2.4 -1.7 DUF483 domain-containing protein compare
MMJJ_RS03630 -2.4 -7.5 AMP phosphorylase compare
MMJJ_RS00235 -2.3 -5.5 hypothetical protein compare
MMJJ_RS02045 -2.3 -1.6 molybdenum cofactor guanylyltransferase compare
MMJJ_RS06820 -2.3 -3.1 CBS domain-containing protein compare
MMJJ_RS05450 -2.3 -8.6 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS09095 -2.3 -2.7 MMPL family transporter compare
MMJJ_RS02190 -2.3 -8.0 molybdopterin biosynthesis protein compare
MMJJ_RS06740 -2.3 -3.1 energy-coupling factor ABC transporter substrate-binding protein compare
MMJJ_RS00345 -2.2 -6.0 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS04485 -2.2 -4.0 riboflavin synthase compare
MMJJ_RS03055 -2.2 -1.5 hypothetical protein compare
MMJJ_RS06725 -2.2 -4.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06630 -2.2 -7.1 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS00580 -2.1 -1.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS05110 -2.1 -10.5 ammonium transporter conserved
MMJJ_RS07840 -2.0 -1.9 Glu-tRNA(Gln) amidotransferase subunit GatD compare
MMJJ_RS08410 -2.0 -2.0 CBS domain-containing protein compare
MMJJ_RS03490 -2.0 -1.2 ribonuclease VapC compare
MMJJ_RS06265 -2.0 -4.9 8-amino-7-oxononanoate synthase compare
MMJJ_RS07485 -2.0 -4.6 DedA family protein compare
MMJJ_RS08080 -1.9 -2.7 TIGR00300 family protein compare
MMJJ_RS05575 -1.9 -1.3 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS08130 -1.9 -0.6 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS06565 -1.9 -3.8 segregation/condensation protein A compare
MMJJ_RS06400 -1.9 -1.8 FumA C-terminus/TtdB family hydratase beta subunit compare
MMJJ_RS04040 -1.9 -3.6 prefoldin subunit beta compare
MMJJ_RS07935 -1.9 -0.8 protein fwdD compare
MMJJ_RS06050 -1.9 -5.6 molybdopterin molybdotransferase MoeA compare
MMJJ_RS09135 -1.8 -3.1 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS06805 -1.8 -1.3 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS07980 -1.8 -4.9 biotin synthase BioB compare
MMJJ_RS06220 -1.8 -1.3 polyamine aminopropyltransferase compare
MMJJ_RS03540 -1.8 -3.6 TIGR00289 family protein compare
MMJJ_RS09175 -1.8 -0.8 anthranilate synthase component I compare
MMJJ_RS06260 -1.8 -3.0 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS05135 -1.8 -0.8 50S ribosomal protein L18Ae compare
MMJJ_RS06035 -1.8 -3.8 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS04045 -1.8 -5.8 DHH family phosphoesterase compare
MMJJ_RS06010 -1.7 -2.4 hypothetical protein compare
MMJJ_RS03650 -1.7 -2.6 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS07870 -1.7 -6.2 ABC transporter substrate-binding protein compare
MMJJ_RS08825 -1.7 -3.4 hypothetical protein compare
MMJJ_RS06655 -1.7 -5.3 transcriptional regulator compare
MMJJ_RS06155 -1.7 -1.6 phosphatidylglycerophosphatase A compare
MMJJ_RS03170 -1.7 -3.4 DUF5612 domain-containing protein compare
MMJJ_RS05225 -1.7 -0.7 Gar1/Naf1 family protein compare
MMJJ_RS01865 -1.7 -2.8 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS07410 -1.6 -1.1 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS04010 -1.6 -4.9 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS09100 -1.6 -4.7 COG1361 S-layer family protein compare
MMJJ_RS03615 -1.6 -1.1 cobalt-precorrin-8 methylmutase compare
MMJJ_RS06695 -1.6 -1.1 amidohydrolase compare
MMJJ_RS00475 -1.6 -1.0 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS00050 -1.6 -4.3 AAA family ATPase compare
MMJJ_RS06270 -1.6 -2.2 dethiobiotin synthase compare
MMJJ_RS06930 -1.6 -1.1 type II methionyl aminopeptidase compare
MMJJ_RS05595 -1.6 -1.5 hypothetical protein compare
MMJJ_RS05260 -1.6 -1.9 ATP-grasp domain-containing protein compare
MMJJ_RS06025 -1.6 -6.4 4Fe-4S binding protein compare
MMJJ_RS03995 -1.6 -1.9 PHP domain-containing protein compare
MMJJ_RS05765 -1.6 -0.7 flagellar protein E compare
MMJJ_RS06625 -1.6 -1.0 pyruvate synthase subunit PorB compare
MMJJ_RS02040 -1.6 -1.0 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS04515 -1.6 -8.4 HD domain-containing protein compare
MMJJ_RS08000 -1.6 -4.7 HesA/MoeB/ThiF family protein compare
MMJJ_RS08470 -1.6 -1.3 ferredoxin family protein compare
MMJJ_RS06020 -1.6 -1.9 hypothetical protein compare
MMJJ_RS06015 -1.6 -3.5 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS07950 -1.6 -1.1 4Fe-4S binding protein compare
MMJJ_RS04655 -1.5 -1.5 FAD-dependent oxidoreductase compare
MMJJ_RS08010 -1.5 -2.4 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS00275 -1.5 -1.0 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS03660 -1.5 -1.1 DUF447 family protein compare
MMJJ_RS00070 -1.5 -1.5 CooT family nickel-binding protein compare
MMJJ_RS09375 -1.5 -0.8 hypothetical protein compare
MMJJ_RS04565 -1.5 -1.5 sirohydrochlorin nickelochelatase compare
MMJJ_RS07040 -1.5 -0.6 preprotein translocase subunit SecY compare
MMJJ_RS02920 -1.5 -0.9 30S ribosomal protein S27ae compare
MMJJ_RS02090 -1.5 -1.7 tyramine--L-glutamate ligase compare
MMJJ_RS06715 -1.5 -4.5 lactaldehyde dehydrogenase compare
MMJJ_RS08135 -1.5 -2.3 30S ribosomal protein S6e compare
MMJJ_RS03065 -1.4 -6.0 CBS domain-containing protein compare
MMJJ_RS03775 -1.4 -2.3 50S ribosomal protein L15e compare
MMJJ_RS00900 -1.4 -3.9 PC4/YdbC family ssDNA-binding protein compare
MMJJ_RS06185 -1.4 -1.4 cobalamin biosynthesis protein compare
MMJJ_RS03635 -1.4 -1.4 methionine--tRNA ligase compare
MMJJ_RS05445 -1.4 -0.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS03880 -1.4 -7.3 TraB/GumN family protein compare
MMJJ_RS05165 -1.4 -4.0 class I SAM-dependent methyltransferase compare
MMJJ_RS08780 -1.4 -2.7 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
MMJJ_RS05375 -1.4 -6.5 radical SAM protein compare
MMJJ_RS03620 -1.4 -2.1 DUF2097 domain-containing protein compare
MMJJ_RS09090 -1.4 -3.8 TetR/AcrR family transcriptional regulator compare
MMJJ_RS04520 -1.4 -1.9 coenzyme F430 synthase compare
MMJJ_RS01935 -1.4 -1.3 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06945 -1.4 -5.5 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMJJ_RS01765 -1.3 -3.7 winged helix-turn-helix domain-containing protein compare
MMJJ_RS00385 -1.3 -4.7 TIGR00454 family protein compare
MMJJ_RS08400 -1.3 -2.1 CoB--CoM heterodisulfide reductase subunit C compare
MMJJ_RS07355 -1.3 -2.4 MoaD/ThiS family protein compare
MMJJ_RS06390 -1.3 -0.8 NADPH-dependent F420 reductase compare
MMJJ_RS05295 -1.3 -4.0 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS03070 -1.3 -2.1 MetS family NSS transporter small subunit compare
MMJJ_RS00600 -1.3 -1.2 hydroxymethylbilane synthase compare
MMJJ_RS01085 -1.3 -2.8 hypothetical protein compare
MMJJ_RS06240 -1.3 -1.2 dihydropteroate synthase-like protein compare
MMJJ_RS01530 -1.3 -1.4 YwbE family protein compare
MMJJ_RS05140 -1.3 -2.4 DUF2666 domain-containing protein compare
MMJJ_RS01915 -1.3 -4.3 precorrin-6A reductase compare
MMJJ_RS03195 -1.3 -1.8 hypothetical protein compare
MMJJ_RS05540 -1.3 -6.6 LysR family transcriptional regulator compare
MMJJ_RS06040 -1.3 -1.2 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS02140 -1.2 -4.5 preflagellin peptidase FlaK compare
MMJJ_RS04155 -1.2 -2.4 hypothetical protein compare
MMJJ_RS07155 -1.2 -3.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS03270 -1.2 -1.0 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS01665 -1.2 -4.1 archease compare
MMJJ_RS00925 -1.2 -2.4 hypothetical protein compare
MMJJ_RS07865 -1.2 -4.3 zinc ribbon domain-containing protein compare
MMJJ_RS02050 -1.2 -3.6 peptidylprolyl isomerase compare
MMJJ_RS08405 -1.2 -4.1 nickel-dependent hydrogenase large subunit compare
MMJJ_RS07725 -1.2 -1.7 DNA primase DnaG compare
MMJJ_RS04145 -1.2 -2.9 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS01745 -1.2 -3.3 metal-dependent transcriptional regulator compare
MMJJ_RS03920 -1.2 -5.4 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS00205 -1.2 -0.8 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS03610 -1.2 -2.5 HIT family protein compare
MMJJ_RS04790 -1.2 -1.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS08500 -1.2 -2.7 L-sulfolactate dehydrogenase compare
MMJJ_RS07720 -1.2 -0.7 UPF0058 family protein compare
MMJJ_RS01925 -1.2 -3.1 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMJJ_RS07005 -1.2 -1.9 transcription factor S compare
MMJJ_RS08840 -1.1 -0.8 calcium/sodium antiporter compare
MMJJ_RS01615 -1.1 -2.8 MoaD/ThiS family protein compare
MMJJ_RS03760 -1.1 -1.1 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06170 -1.1 -2.3 hypothetical protein compare
MMJJ_RS06925 -1.1 -0.8 GMP synthase subunit A compare
MMJJ_RS07975 -1.1 -2.9 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS04110 -1.1 -2.8 hypothetical protein compare
MMJJ_RS02665 -1.1 -1.2 methyl-accepting chemotaxis protein compare
MMJJ_RS04800 -1.1 -2.0 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS03245 -1.1 -0.7 UMP kinase compare
MMJJ_RS08320 -1.1 -0.7 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS08770 -1.1 -2.8 HAD family hydrolase compare
MMJJ_RS09010 -1.1 -2.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMJJ_RS00570 -1.1 -0.8 ribonuclease P compare
MMJJ_RS07945 -1.1 -0.8 4Fe-4S binding protein compare
MMJJ_RS07365 -1.1 -5.4 CatB-related O-acetyltransferase compare
MMJJ_RS01035 -1.1 -2.3 hypothetical protein compare
MMJJ_RS07430 -1.1 -1.3 ribonuclease VapC compare
MMJJ_RS02275 -1.1 -1.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS01820 -1.1 -1.7 MJ1244 family protein compare
MMJJ_RS03060 -1.1 -1.0 methanogenesis marker 7 protein compare
MMJJ_RS08175 -1.1 -3.3 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS01565 -1.1 -2.8 TIGR00267 family protein compare
MMJJ_RS07585 -1.1 -2.3 DHH family phosphoesterase compare
MMJJ_RS05770 -1.1 -0.7 flagellar protein D compare
MMJJ_RS08230 -1.1 -0.7 ribose-5-phosphate isomerase RpiA compare
MMJJ_RS07165 -1.1 -5.8 chromosome segregation protein SMC compare
MMJJ_RS03820 -1.1 -0.7 hydrogenase formation protein HypD compare
MMJJ_RS07640 -1.1 -6.5 cache domain-containing protein compare
MMJJ_RS00950 -1.1 -2.9 DUF111 family protein compare
MMJJ_RS06905 -1.1 -0.6 hypothetical protein compare
MMJJ_RS04685 -1.1 -2.1 carbamoyltransferase HypF compare
MMJJ_RS09190 -1.1 -0.5 tryptophan synthase subunit beta compare
MMJJ_RS03110 -1.0 -1.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS02855 -1.0 -3.0 DEAD/DEAH box helicase compare
MMJJ_RS06215 -1.0 -1.2 agmatinase compare
MMJJ_RS04050 -1.0 -0.8 dihydroneopterin aldolase family protein compare
MMJJ_RS06175 -1.0 -0.7 DUF1743 domain-containing protein compare
MMJJ_RS00790 -1.0 -2.9 ribonuclease H family protein compare
MMJJ_RS06030 -1.0 -1.6 4Fe-4S binding protein compare
MMJJ_RS00675 -1.0 -5.3 nitrogenase compare
MMJJ_RS04525 -1.0 -1.4 hypothetical protein compare
MMJJ_RS06005 -1.0 -2.4 energy conserving hydrogenase EhbF compare
MMJJ_RS08865 -1.0 -3.3 class IV adenylate cyclase compare
MMJJ_RS01600 -1.0 -0.7 radical SAM protein compare
MMJJ_RS03895 -1.0 -1.1 hydrogenase expression/formation protein HypE compare
MMJJ_RS04995 -1.0 -1.4 Tfx family DNA-binding protein compare
MMJJ_RS00270 -1.0 -1.0 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS00680 -1.0 -5.9 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMJJ_RS05155 -1.0 -1.5 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS03230 -1.0 -1.2 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS06940 -1.0 -3.6 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS07490 -1.0 -1.0 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMJJ_RS05070 -1.0 -0.7 DNA primase catalytic subunit PriS compare
MMJJ_RS03965 -1.0 -0.5 DNA-directed RNA polymerase subunit L compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source Adenosine in Methanococcus maripaludis JJ

For nitrogen source Adenosine across organisms