Experiment set4IT005 for Ralstonia sp. UNC404CL21Col

Compare to:

root EcoFAB sample 1; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS02655 -6.7 -6.6 anti-sigma factor compare
ABZR87_RS21795 -6.7 -4.6 NUDIX domain-containing protein compare
ABZR87_RS08630 -5.9 -4.1 dihydroorotase compare
ABZR87_RS17650 -5.8 -4.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS08695 -5.5 -17.6 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS22920 -5.3 -3.7 phosphogluconate dehydratase compare
ABZR87_RS14115 -5.2 -4.4 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS14500 -5.0 -13.3 tryptophan synthase subunit beta compare
ABZR87_RS21285 -4.8 -2.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS02160 -4.8 -6.7 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS08640 -4.6 -6.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS01745 -4.6 -5.5 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS16125 -4.6 -7.6 heme biosynthesis protein HemY compare
ABZR87_RS09465 -4.6 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS13790 -4.5 -8.7 chorismate synthase compare
ABZR87_RS05305 -4.5 -12.3 TetR family transcriptional regulator compare
ABZR87_RS14540 -4.5 -6.9 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02445 -4.5 -3.1 Sec-independent protein translocase protein TatB compare
ABZR87_RS10175 -4.4 -6.7 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS02590 -4.3 -10.0 3-dehydroquinate synthase compare
ABZR87_RS05635 -4.3 -16.1 muropeptide transporter compare
ABZR87_RS01450 -4.2 -3.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS14965 -4.2 -2.9 DUF3619 family protein compare
ABZR87_RS05100 -4.2 -5.0 RNA polymerase-binding protein DksA compare
ABZR87_RS10195 -4.2 -2.9 signal peptidase I compare
ABZR87_RS17310 -4.1 -7.1 PadR family transcriptional regulator compare
ABZR87_RS06350 -4.1 -7.5 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS17145 -4.0 -13.6 AMP nucleosidase compare
ABZR87_RS02550 -4.0 -3.9 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS02555 -3.9 -2.7 ABC transporter ATP-binding protein compare
ABZR87_RS02595 -3.9 -11.3 shikimate kinase compare
ABZR87_RS07380 -3.9 -15.2 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02640 -3.9 -13.6 diaminopimelate decarboxylase compare
ABZR87_RS14505 -3.8 -4.3 phosphoribosylanthranilate isomerase compare
ABZR87_RS02145 -3.8 -2.8 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS00435 -3.8 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS14530 -3.8 -6.8 3-isopropylmalate dehydrogenase compare
ABZR87_RS02155 -3.7 -7.9 anthranilate phosphoribosyltransferase compare
ABZR87_RS16055 -3.6 -7.7 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS06845 -3.6 -10.9 heme o synthase compare
ABZR87_RS07005 -3.6 -2.5 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS14490 -3.6 -9.5 tryptophan synthase subunit alpha compare
ABZR87_RS09515 -3.5 -2.4 cysteine synthase CysM compare
ABZR87_RS10085 -3.5 -2.2 Rne/Rng family ribonuclease compare
ABZR87_RS11170 -3.5 -1.1 FixH family protein compare
ABZR87_RS03865 -3.5 -8.7 GntR family transcriptional regulator compare
ABZR87_RS08795 -3.4 -4.1 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS10170 -3.4 -5.0 RseA family anti-sigma factor compare
ABZR87_RS08990 -3.4 -7.0 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS20555 -3.4 -4.3 helix-turn-helix transcriptional regulator compare
ABZR87_RS02545 -3.4 -5.7 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS16185 -3.4 -2.3 dCTP deaminase compare
ABZR87_RS14535 -3.3 -5.1 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS13285 -3.3 -9.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS16170 -3.3 -2.3 argininosuccinate lyase compare
ABZR87_RS12785 -3.3 -2.3 endopeptidase La compare
ABZR87_RS09625 -3.3 -8.0 CobD/CbiB family protein compare
ABZR87_RS07665 -3.2 -10.6 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS04975 -3.2 -3.1 peptide deformylase compare
ABZR87_RS02540 -3.2 -3.8 VacJ family lipoprotein compare
ABZR87_RS02535 -3.2 -4.4 phospholipid-binding protein MlaC compare
ABZR87_RS16730 -3.2 -6.9 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS08970 -3.2 -8.7 protein TolQ compare
ABZR87_RS16960 -3.2 -2.2 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS16735 -3.2 -11.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS02440 -3.2 -8.6 twin-arginine translocase subunit TatC compare
ABZR87_RS08985 -3.1 -12.4 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS07675 -3.1 -6.8 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS04945 -3.1 -3.0 DUF4390 domain-containing protein compare
ABZR87_RS11195 -3.0 -6.7 pseudouridine synthase compare
ABZR87_RS04995 -3.0 -2.1 DNA topoisomerase III compare
ABZR87_RS04865 -3.0 -3.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02850 -3.0 -2.0 elongation factor Tu compare
ABZR87_RS10980 -2.9 -1.3 tRNA-Leu compare
ABZR87_RS11435 -2.9 -2.0 Mth938-like domain-containing protein compare
ABZR87_RS07035 -2.8 -6.5 RNase adapter RapZ compare
ABZR87_RS22485 -2.8 -6.1 FAD-dependent oxidoreductase compare
ABZR87_RS02385 -2.7 -4.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS08980 -2.7 -4.2 cell envelope integrity protein TolA compare
ABZR87_RS01085 -2.7 -3.9 rhombosortase compare
ABZR87_RS13645 -2.6 -1.2 hypothetical protein compare
ABZR87_RS17730 -2.6 -5.0 GntR family transcriptional regulator compare
ABZR87_RS09445 -2.6 -9.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS06705 -2.6 -12.4 glutamate--cysteine ligase compare
ABZR87_RS12790 -2.6 -1.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS16820 -2.5 -7.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS21055 -2.5 -4.5 cyclopropane-fatty-acyl-phospholipid synthase family protein compare
ABZR87_RS14605 -2.5 -10.2 aconitate hydratase AcnA compare
ABZR87_RS23290 -2.5 -2.9 2-hydroxychromene-2-carboxylate isomerase compare
ABZR87_RS21065 -2.4 -6.5 FAD-dependent oxidoreductase compare
ABZR87_RS02570 -2.4 -15.5 glutamate synthase-related protein compare
ABZR87_RS01810 -2.4 -2.6 glutamate 5-kinase compare
ABZR87_RS02140 -2.4 -12.2 anthranilate synthase component I compare
ABZR87_RS04940 -2.4 -5.3 PAS domain-containing sensor histidine kinase compare
ABZR87_RS13475 -2.4 -6.6 PAS domain S-box protein compare
ABZR87_RS07625 -2.4 -1.6 Holliday junction branch migration protein RuvA compare
ABZR87_RS07510 -2.4 -4.5 LysR family transcriptional regulator compare
ABZR87_RS09935 -2.4 -1.6 amino acid aminotransferase compare
ABZR87_RS06355 -2.4 -7.4 SPOR domain-containing protein compare
ABZR87_RS11495 -2.4 -1.6 NADPH-dependent FMN reductase compare
ABZR87_RS03850 -2.4 -3.6 ureidoglycolate lyase compare
ABZR87_RS21950 -2.3 -5.7 hypothetical protein compare
ABZR87_RS16270 -2.3 -1.2 cold-shock protein compare
ABZR87_RS21035 -2.3 -8.9 lipocalin family protein compare
ABZR87_RS09450 -2.3 -6.0 prephenate dehydratase compare
ABZR87_RS21060 -2.3 -4.7 DUF1365 domain-containing protein compare
ABZR87_RS01225 -2.3 -2.4 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS11015 -2.3 -4.8 amino-acid N-acetyltransferase compare
ABZR87_RS15605 -2.3 -2.1 hypothetical protein compare
ABZR87_RS02380 -2.2 -8.2 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS05570 -2.2 -7.0 lysophospholipid acyltransferase family protein compare
ABZR87_RS07360 -2.2 -9.1 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS08700 -2.2 -7.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS07760 -2.2 -2.0 HlyC/CorC family transporter compare
ABZR87_RS02375 -2.2 -7.7 cytochrome c1 compare
ABZR87_RS00875 -2.2 -3.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS12800 -2.2 -2.7 trigger factor compare
ABZR87_RS00295 -2.2 -3.5 ABC transporter ATP-binding protein compare
ABZR87_RS22690 -2.2 -2.8 XRE family transcriptional regulator compare
ABZR87_RS07470 -2.2 -6.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS02075 -2.1 -2.1 23S ribosomal RNA compare
ABZR87_RS01420 -2.1 -2.8 outer membrane protein assembly factor BamE compare
ABZR87_RS16080 -2.1 -2.1 P-II family nitrogen regulator compare
ABZR87_RS13300 -2.1 -6.2 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS00220 -2.1 -7.5 CysB family HTH-type transcriptional regulator compare
ABZR87_RS08625 -2.1 -1.4 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS11790 -2.1 -2.0 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS18165 -2.1 -1.7 hypothetical protein compare
ABZR87_RS22325 -2.0 -3.1 H-NS histone family protein compare
ABZR87_RS06745 -2.0 -5.4 S41 family peptidase compare
ABZR87_RS06710 -2.0 -12.1 glutathione synthase compare
ABZR87_RS21050 -2.0 -2.6 DUF1295 domain-containing protein compare
ABZR87_RS11330 -2.0 -3.3 transcriptional repressor LexA compare
ABZR87_RS01855 -2.0 -8.1 A24 family peptidase compare
ABZR87_RS23125 -2.0 -8.5 XRE family transcriptional regulator compare
ABZR87_RS08650 -1.9 -8.1 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS13770 -1.9 -5.2 CoA transferase subunit A compare
ABZR87_RS10550 -1.9 -1.5 outer membrane protein assembly factor BamC compare
ABZR87_RS01885 -1.9 -3.4 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS04880 -1.9 -6.4 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS04720 -1.9 -5.9 IclR family transcriptional regulator compare
ABZR87_RS14190 -1.9 -8.9 DUF2589 domain-containing protein compare
ABZR87_RS01765 -1.9 -3.0 cytochrome c biogenesis protein CcsA compare
ABZR87_RS13445 -1.9 -3.2 phasin family protein compare
ABZR87_RS15680 -1.8 -6.5 DNA polymerase I compare
ABZR87_RS12965 -1.8 -1.5 tail protein X compare
ABZR87_RS17525 -1.8 -8.2 helix-turn-helix domain-containing protein compare
ABZR87_RS20875 -1.8 -5.9 LysR family transcriptional regulator compare
ABZR87_RS10400 -1.8 -1.3 hypothetical protein compare
ABZR87_RS14510 -1.8 -4.0 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS12795 -1.8 -3.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS06725 -1.8 -7.9 phosphoenolpyruvate--protein phosphotransferase compare
ABZR87_RS13290 -1.8 -3.0 3-ketoacyl-ACP reductase compare
ABZR87_RS00185 -1.8 -4.0 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS06250 -1.8 -3.3 hydroxymethylglutaryl-CoA lyase compare
ABZR87_RS11440 -1.8 -4.2 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS14375 -1.8 -2.9 fumarate hydratase compare
ABZR87_RS08070 -1.8 -1.3 pyruvate kinase compare
ABZR87_RS05200 -1.8 -11.2 homoserine O-acetyltransferase compare
ABZR87_RS01425 -1.8 -3.5 ferric iron uptake transcriptional regulator compare
ABZR87_RS17215 -1.7 -6.0 1,4-alpha-glucan branching protein GlgB compare
ABZR87_RS10395 -1.7 -4.9 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS03330 -1.7 -4.3 MarR family transcriptional regulator compare
ABZR87_RS03440 -1.7 -5.9 type II secretion system protein GspM compare
ABZR87_RS11940 -1.7 -2.0 SsrA-binding protein SmpB compare
ABZR87_RS22970 -1.7 -9.0 cystathionine gamma-synthase family protein compare
ABZR87_RS06715 -1.7 -3.1 PTS sugar transporter subunit IIA compare
ABZR87_RS21735 -1.6 -1.4 DUF2917 domain-containing protein compare
ABZR87_RS07055 -1.6 -6.6 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS01280 -1.6 -3.1 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS01110 -1.6 -5.7 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS15095 -1.6 -6.2 allantoinase PuuE compare
ABZR87_RS03430 -1.6 -7.3 type II secretion system minor pseudopilin GspK compare
ABZR87_RS19050 -1.6 -4.2 glycosyltransferase family 39 protein compare
ABZR87_RS00205 -1.6 -1.7 DUF934 domain-containing protein compare
ABZR87_RS01270 -1.6 -6.0 ATP-dependent DNA helicase RecG compare
ABZR87_RS05320 -1.6 -8.1 efflux transporter outer membrane subunit compare
ABZR87_RS00795 -1.6 -3.0 site-specific tyrosine recombinase XerD compare
ABZR87_RS19675 -1.6 -1.1 cold-shock protein compare
ABZR87_RS11245 -1.6 -3.8 translational GTPase TypA compare
ABZR87_RS11925 -1.5 -7.1 phosphoenolpyruvate synthase compare
ABZR87_RS06840 -1.5 -5.4 COX15/CtaA family protein compare
ABZR87_RS10165 -1.5 -6.9 RNA polymerase sigma factor RpoE compare
ABZR87_RS00970 -1.5 -1.0 molecular chaperone DnaJ compare
ABZR87_RS04270 -1.5 -3.4 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS10780 -1.5 -1.5 PD-(D/E)XK nuclease family protein compare
ABZR87_RS05580 -1.5 -2.9 diaminopimelate epimerase compare
ABZR87_RS11470 -1.5 -3.7 molybdenum cofactor biosynthesis protein MoaE compare
ABZR87_RS03460 -1.5 -5.8 type II secretion system inner membrane protein GspF compare
ABZR87_RS20440 -1.5 -0.9 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS13250 -1.5 -1.5 phosphoserine phosphatase SerB compare
ABZR87_RS05645 -1.5 -3.4 SDR family oxidoreductase compare
ABZR87_RS14575 -1.5 -3.1 GntR family transcriptional regulator compare
ABZR87_RS05590 -1.5 -1.0 orotate phosphoribosyltransferase compare
ABZR87_RS03455 -1.5 -7.4 type II secretion system ATPase GspE compare
ABZR87_RS04700 -1.5 -5.7 FAD-binding oxidoreductase compare
ABZR87_RS17695 -1.5 -2.1 helix-turn-helix transcriptional regulator compare
ABZR87_RS15705 -1.5 -3.1 UvrD-helicase domain-containing protein compare
ABZR87_RS16250 -1.5 -3.4 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS03780 -1.5 -1.4 thiosulfate oxidation carrier protein SoxY compare


Specific Phenotypes

For 4 genes in this experiment