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Experiment set4IT005 for
Ralstonia sp. UNC404CL21Col
Compare to:
Go
root EcoFAB sample 1; outgrowth in LB
200 most important genes:
gene
name
fitness
t score
description
ABZR87
_RS02655
-6.7
-6.6
anti-sigma factor
compare
ABZR87
_RS21795
-6.7
-4.6
NUDIX domain-containing protein
compare
ABZR87
_RS08630
-5.9
-4.1
dihydroorotase
compare
ABZR87
_RS17650
-5.8
-4.0
TetR/AcrR family transcriptional regulator
compare
ABZR87
_RS08695
-5.5
-17.6
capsular polysaccharide biosynthesis protein CapF
compare
ABZR87
_RS22920
-5.3
-3.7
phosphogluconate dehydratase
compare
ABZR87
_RS14115
-5.2
-4.4
ATP-dependent zinc metalloprotease FtsH
compare
ABZR87
_RS14500
-5.0
-13.3
tryptophan synthase subunit beta
compare
ABZR87
_RS21285
-4.8
-2.2
TetR/AcrR family transcriptional regulator
compare
ABZR87
_RS02160
-4.8
-6.7
indole-3-glycerol phosphate synthase TrpC
compare
ABZR87
_RS08640
-4.6
-6.3
symmetrical bis(5'-nucleosyl)-tetraphosphatase
compare
ABZR87
_RS01745
-4.6
-5.5
1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
compare
ABZR87
_RS16125
-4.6
-7.6
heme biosynthesis protein HemY
compare
ABZR87
_RS09465
-4.6
-6.2
3-phosphoshikimate 1-carboxyvinyltransferase
compare
ABZR87
_RS13790
-4.5
-8.7
chorismate synthase
compare
ABZR87
_RS05305
-4.5
-12.3
TetR family transcriptional regulator
compare
ABZR87
_RS14540
-4.5
-6.9
3-isopropylmalate dehydratase large subunit
compare
ABZR87
_RS02445
-4.5
-3.1
Sec-independent protein translocase protein TatB
compare
ABZR87
_RS10175
-4.4
-6.7
MucB/RseB C-terminal domain-containing protein
compare
ABZR87
_RS02590
-4.3
-10.0
3-dehydroquinate synthase
compare
ABZR87
_RS05635
-4.3
-16.1
muropeptide transporter
compare
ABZR87
_RS01450
-4.2
-3.5
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
compare
ABZR87
_RS14965
-4.2
-2.9
DUF3619 family protein
compare
ABZR87
_RS05100
-4.2
-5.0
RNA polymerase-binding protein DksA
compare
ABZR87
_RS10195
-4.2
-2.9
signal peptidase I
compare
ABZR87
_RS17310
-4.1
-7.1
PadR family transcriptional regulator
compare
ABZR87
_RS06350
-4.1
-7.5
thiol:disulfide interchange protein DsbA/DsbL
compare
ABZR87
_RS17145
-4.0
-13.6
AMP nucleosidase
compare
ABZR87
_RS02550
-4.0
-3.9
lipid asymmetry maintenance ABC transporter permease subunit MlaE
compare
ABZR87
_RS02555
-3.9
-2.7
ABC transporter ATP-binding protein
compare
ABZR87
_RS02595
-3.9
-11.3
shikimate kinase
compare
ABZR87
_RS07380
-3.9
-15.2
FAD/FMN-binding oxidoreductase
compare
ABZR87
_RS02640
-3.9
-13.6
diaminopimelate decarboxylase
compare
ABZR87
_RS14505
-3.8
-4.3
phosphoribosylanthranilate isomerase
compare
ABZR87
_RS02145
-3.8
-2.8
aminodeoxychorismate/anthranilate synthase component II
compare
ABZR87
_RS00435
-3.8
-2.6
ATP-dependent Clp protease ATP-binding subunit ClpA
compare
ABZR87
_RS14530
-3.8
-6.8
3-isopropylmalate dehydrogenase
compare
ABZR87
_RS02155
-3.7
-7.9
anthranilate phosphoribosyltransferase
compare
ABZR87
_RS16055
-3.6
-7.7
outer membrane lipoprotein chaperone LolA
compare
ABZR87
_RS06845
-3.6
-10.9
heme o synthase
compare
ABZR87
_RS07005
-3.6
-2.5
lipoprotein insertase outer membrane protein LolB
compare
ABZR87
_RS14490
-3.6
-9.5
tryptophan synthase subunit alpha
compare
ABZR87
_RS09515
-3.5
-2.4
cysteine synthase CysM
compare
ABZR87
_RS10085
-3.5
-2.2
Rne/Rng family ribonuclease
compare
ABZR87
_RS11170
-3.5
-1.1
FixH family protein
compare
ABZR87
_RS03865
-3.5
-8.7
GntR family transcriptional regulator
compare
ABZR87
_RS08795
-3.4
-4.1
undecaprenyl-diphosphate phosphatase
compare
ABZR87
_RS10170
-3.4
-5.0
RseA family anti-sigma factor
compare
ABZR87
_RS08990
-3.4
-7.0
peptidoglycan-associated lipoprotein Pal
compare
ABZR87
_RS20555
-3.4
-4.3
helix-turn-helix transcriptional regulator
compare
ABZR87
_RS02545
-3.4
-5.7
outer membrane lipid asymmetry maintenance protein MlaD
compare
ABZR87
_RS16185
-3.4
-2.3
dCTP deaminase
compare
ABZR87
_RS14535
-3.3
-5.1
3-isopropylmalate dehydratase small subunit
compare
ABZR87
_RS13285
-3.3
-9.2
polyhydroxyalkanoate synthesis repressor PhaR
compare
ABZR87
_RS16170
-3.3
-2.3
argininosuccinate lyase
compare
ABZR87
_RS12785
-3.3
-2.3
endopeptidase La
compare
ABZR87
_RS09625
-3.3
-8.0
CobD/CbiB family protein
compare
ABZR87
_RS07665
-3.2
-10.6
aminopeptidase P N-terminal domain-containing protein
compare
ABZR87
_RS04975
-3.2
-3.1
peptide deformylase
compare
ABZR87
_RS02540
-3.2
-3.8
VacJ family lipoprotein
compare
ABZR87
_RS02535
-3.2
-4.4
phospholipid-binding protein MlaC
compare
ABZR87
_RS16730
-3.2
-6.9
2-methylaconitate cis-trans isomerase PrpF
compare
ABZR87
_RS08970
-3.2
-8.7
protein TolQ
compare
ABZR87
_RS16960
-3.2
-2.2
HAMP domain-containing sensor histidine kinase
compare
ABZR87
_RS16735
-3.2
-11.6
Fe/S-dependent 2-methylisocitrate dehydratase AcnD
compare
ABZR87
_RS02440
-3.2
-8.6
twin-arginine translocase subunit TatC
compare
ABZR87
_RS08985
-3.1
-12.4
Tol-Pal system beta propeller repeat protein TolB
compare
ABZR87
_RS07675
-3.1
-6.8
N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU
compare
ABZR87
_RS04945
-3.1
-3.0
DUF4390 domain-containing protein
compare
ABZR87
_RS11195
-3.0
-6.7
pseudouridine synthase
compare
ABZR87
_RS04995
-3.0
-2.1
DNA topoisomerase III
compare
ABZR87
_RS04865
-3.0
-3.6
methylenetetrahydrofolate reductase [NAD(P)H]
compare
ABZR87
_RS02850
-3.0
-2.0
elongation factor Tu
compare
ABZR87
_RS10980
-2.9
-1.3
tRNA-Leu
compare
ABZR87
_RS11435
-2.9
-2.0
Mth938-like domain-containing protein
compare
ABZR87
_RS07035
-2.8
-6.5
RNase adapter RapZ
compare
ABZR87
_RS22485
-2.8
-6.1
FAD-dependent oxidoreductase
compare
ABZR87
_RS02385
-2.7
-4.3
ubiquinol-cytochrome c reductase iron-sulfur subunit
compare
ABZR87
_RS08980
-2.7
-4.2
cell envelope integrity protein TolA
compare
ABZR87
_RS01085
-2.7
-3.9
rhombosortase
compare
ABZR87
_RS13645
-2.6
-1.2
hypothetical protein
compare
ABZR87
_RS17730
-2.6
-5.0
GntR family transcriptional regulator
compare
ABZR87
_RS09445
-2.6
-9.1
3-phosphoserine/phosphohydroxythreonine transaminase
compare
ABZR87
_RS06705
-2.6
-12.4
glutamate--cysteine ligase
compare
ABZR87
_RS12790
-2.6
-1.8
ATP-dependent Clp protease ATP-binding subunit ClpX
compare
ABZR87
_RS16820
-2.5
-7.1
TetR/AcrR family transcriptional regulator
compare
ABZR87
_RS21055
-2.5
-4.5
cyclopropane-fatty-acyl-phospholipid synthase family protein
compare
ABZR87
_RS14605
-2.5
-10.2
aconitate hydratase AcnA
compare
ABZR87
_RS23290
-2.5
-2.9
2-hydroxychromene-2-carboxylate isomerase
compare
ABZR87
_RS21065
-2.4
-6.5
FAD-dependent oxidoreductase
compare
ABZR87
_RS02570
-2.4
-15.5
glutamate synthase-related protein
compare
ABZR87
_RS01810
-2.4
-2.6
glutamate 5-kinase
compare
ABZR87
_RS02140
-2.4
-12.2
anthranilate synthase component I
compare
ABZR87
_RS04940
-2.4
-5.3
PAS domain-containing sensor histidine kinase
compare
ABZR87
_RS13475
-2.4
-6.6
PAS domain S-box protein
compare
ABZR87
_RS07625
-2.4
-1.6
Holliday junction branch migration protein RuvA
compare
ABZR87
_RS07510
-2.4
-4.5
LysR family transcriptional regulator
compare
ABZR87
_RS09935
-2.4
-1.6
amino acid aminotransferase
compare
ABZR87
_RS06355
-2.4
-7.4
SPOR domain-containing protein
compare
ABZR87
_RS11495
-2.4
-1.6
NADPH-dependent FMN reductase
compare
ABZR87
_RS03850
-2.4
-3.6
ureidoglycolate lyase
compare
ABZR87
_RS21950
-2.3
-5.7
hypothetical protein
compare
ABZR87
_RS16270
-2.3
-1.2
cold-shock protein
compare
ABZR87
_RS21035
-2.3
-8.9
lipocalin family protein
compare
ABZR87
_RS09450
-2.3
-6.0
prephenate dehydratase
compare
ABZR87
_RS21060
-2.3
-4.7
DUF1365 domain-containing protein
compare
ABZR87
_RS01225
-2.3
-2.4
YggS family pyridoxal phosphate-dependent enzyme
compare
ABZR87
_RS11015
-2.3
-4.8
amino-acid N-acetyltransferase
compare
ABZR87
_RS15605
-2.3
-2.1
hypothetical protein
compare
ABZR87
_RS02380
-2.2
-8.2
cytochrome bc complex cytochrome b subunit
compare
ABZR87
_RS05570
-2.2
-7.0
lysophospholipid acyltransferase family protein
compare
ABZR87
_RS07360
-2.2
-9.1
threonine ammonia-lyase, biosynthetic
compare
ABZR87
_RS08700
-2.2
-7.8
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
compare
ABZR87
_RS07760
-2.2
-2.0
HlyC/CorC family transporter
compare
ABZR87
_RS02375
-2.2
-7.7
cytochrome c1
compare
ABZR87
_RS00875
-2.2
-3.0
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
compare
ABZR87
_RS12800
-2.2
-2.7
trigger factor
compare
ABZR87
_RS00295
-2.2
-3.5
ABC transporter ATP-binding protein
compare
ABZR87
_RS22690
-2.2
-2.8
XRE family transcriptional regulator
compare
ABZR87
_RS07470
-2.2
-6.1
TetR/AcrR family transcriptional regulator
compare
ABZR87
_RS02075
-2.1
-2.1
23S ribosomal RNA
compare
ABZR87
_RS01420
-2.1
-2.8
outer membrane protein assembly factor BamE
compare
ABZR87
_RS16080
-2.1
-2.1
P-II family nitrogen regulator
compare
ABZR87
_RS13300
-2.1
-6.2
class I poly(R)-hydroxyalkanoic acid synthase
compare
ABZR87
_RS00220
-2.1
-7.5
CysB family HTH-type transcriptional regulator
compare
ABZR87
_RS08625
-2.1
-1.4
aspartate carbamoyltransferase catalytic subunit
compare
ABZR87
_RS11790
-2.1
-2.0
cell division protein ZipA C-terminal FtsZ-binding domain-containing protein
compare
ABZR87
_RS18165
-2.1
-1.7
hypothetical protein
compare
ABZR87
_RS22325
-2.0
-3.1
H-NS histone family protein
compare
ABZR87
_RS06745
-2.0
-5.4
S41 family peptidase
compare
ABZR87
_RS06710
-2.0
-12.1
glutathione synthase
compare
ABZR87
_RS21050
-2.0
-2.6
DUF1295 domain-containing protein
compare
ABZR87
_RS11330
-2.0
-3.3
transcriptional repressor LexA
compare
ABZR87
_RS01855
-2.0
-8.1
A24 family peptidase
compare
ABZR87
_RS23125
-2.0
-8.5
XRE family transcriptional regulator
compare
ABZR87
_RS08650
-1.9
-8.1
dTDP-4-dehydrorhamnose reductase
compare
ABZR87
_RS13770
-1.9
-5.2
CoA transferase subunit A
compare
ABZR87
_RS10550
-1.9
-1.5
outer membrane protein assembly factor BamC
compare
ABZR87
_RS01885
-1.9
-3.4
bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ
compare
ABZR87
_RS04880
-1.9
-6.4
5-formyltetrahydrofolate cyclo-ligase
compare
ABZR87
_RS04720
-1.9
-5.9
IclR family transcriptional regulator
compare
ABZR87
_RS14190
-1.9
-8.9
DUF2589 domain-containing protein
compare
ABZR87
_RS01765
-1.9
-3.0
cytochrome c biogenesis protein CcsA
compare
ABZR87
_RS13445
-1.9
-3.2
phasin family protein
compare
ABZR87
_RS15680
-1.8
-6.5
DNA polymerase I
compare
ABZR87
_RS12965
-1.8
-1.5
tail protein X
compare
ABZR87
_RS17525
-1.8
-8.2
helix-turn-helix domain-containing protein
compare
ABZR87
_RS20875
-1.8
-5.9
LysR family transcriptional regulator
compare
ABZR87
_RS10400
-1.8
-1.3
hypothetical protein
compare
ABZR87
_RS14510
-1.8
-4.0
tRNA pseudouridine(38-40) synthase TruA
compare
ABZR87
_RS12795
-1.8
-3.8
ATP-dependent Clp endopeptidase proteolytic subunit ClpP
compare
ABZR87
_RS06725
-1.8
-7.9
phosphoenolpyruvate--protein phosphotransferase
compare
ABZR87
_RS13290
-1.8
-3.0
3-ketoacyl-ACP reductase
compare
ABZR87
_RS00185
-1.8
-4.0
uroporphyrinogen-III C-methyltransferase
compare
ABZR87
_RS06250
-1.8
-3.3
hydroxymethylglutaryl-CoA lyase
compare
ABZR87
_RS11440
-1.8
-4.2
pyridoxal phosphate-dependent aminotransferase
compare
ABZR87
_RS14375
-1.8
-2.9
fumarate hydratase
compare
ABZR87
_RS08070
-1.8
-1.3
pyruvate kinase
compare
ABZR87
_RS05200
-1.8
-11.2
homoserine O-acetyltransferase
compare
ABZR87
_RS01425
-1.8
-3.5
ferric iron uptake transcriptional regulator
compare
ABZR87
_RS17215
-1.7
-6.0
1,4-alpha-glucan branching protein GlgB
compare
ABZR87
_RS10395
-1.7
-4.9
single-stranded-DNA-specific exonuclease RecJ
compare
ABZR87
_RS03330
-1.7
-4.3
MarR family transcriptional regulator
compare
ABZR87
_RS03440
-1.7
-5.9
type II secretion system protein GspM
compare
ABZR87
_RS11940
-1.7
-2.0
SsrA-binding protein SmpB
compare
ABZR87
_RS22970
-1.7
-9.0
cystathionine gamma-synthase family protein
compare
ABZR87
_RS06715
-1.7
-3.1
PTS sugar transporter subunit IIA
compare
ABZR87
_RS21735
-1.6
-1.4
DUF2917 domain-containing protein
compare
ABZR87
_RS07055
-1.6
-6.6
ribosome-associated translation inhibitor RaiA
compare
ABZR87
_RS01280
-1.6
-3.1
tRNA guanosine(34) transglycosylase Tgt
compare
ABZR87
_RS01110
-1.6
-5.7
3-deoxy-7-phosphoheptulonate synthase AroG
compare
ABZR87
_RS15095
-1.6
-6.2
allantoinase PuuE
compare
ABZR87
_RS03430
-1.6
-7.3
type II secretion system minor pseudopilin GspK
compare
ABZR87
_RS19050
-1.6
-4.2
glycosyltransferase family 39 protein
compare
ABZR87
_RS00205
-1.6
-1.7
DUF934 domain-containing protein
compare
ABZR87
_RS01270
-1.6
-6.0
ATP-dependent DNA helicase RecG
compare
ABZR87
_RS05320
-1.6
-8.1
efflux transporter outer membrane subunit
compare
ABZR87
_RS00795
-1.6
-3.0
site-specific tyrosine recombinase XerD
compare
ABZR87
_RS19675
-1.6
-1.1
cold-shock protein
compare
ABZR87
_RS11245
-1.6
-3.8
translational GTPase TypA
compare
ABZR87
_RS11925
-1.5
-7.1
phosphoenolpyruvate synthase
compare
ABZR87
_RS06840
-1.5
-5.4
COX15/CtaA family protein
compare
ABZR87
_RS10165
-1.5
-6.9
RNA polymerase sigma factor RpoE
compare
ABZR87
_RS00970
-1.5
-1.0
molecular chaperone DnaJ
compare
ABZR87
_RS04270
-1.5
-3.4
4a-hydroxytetrahydrobiopterin dehydratase
compare
ABZR87
_RS10780
-1.5
-1.5
PD-(D/E)XK nuclease family protein
compare
ABZR87
_RS05580
-1.5
-2.9
diaminopimelate epimerase
compare
ABZR87
_RS11470
-1.5
-3.7
molybdenum cofactor biosynthesis protein MoaE
compare
ABZR87
_RS03460
-1.5
-5.8
type II secretion system inner membrane protein GspF
compare
ABZR87
_RS20440
-1.5
-0.9
F0F1 ATP synthase subunit epsilon
compare
ABZR87
_RS13250
-1.5
-1.5
phosphoserine phosphatase SerB
compare
ABZR87
_RS05645
-1.5
-3.4
SDR family oxidoreductase
compare
ABZR87
_RS14575
-1.5
-3.1
GntR family transcriptional regulator
compare
ABZR87
_RS05590
-1.5
-1.0
orotate phosphoribosyltransferase
compare
ABZR87
_RS03455
-1.5
-7.4
type II secretion system ATPase GspE
compare
ABZR87
_RS04700
-1.5
-5.7
FAD-binding oxidoreductase
compare
ABZR87
_RS17695
-1.5
-2.1
helix-turn-helix transcriptional regulator
compare
ABZR87
_RS15705
-1.5
-3.1
UvrD-helicase domain-containing protein
compare
ABZR87
_RS16250
-1.5
-3.4
iron-sulfur cluster carrier protein ApbC
compare
ABZR87
_RS03780
-1.5
-1.4
thiosulfate oxidation carrier protein SoxY
compare
Specific Phenotypes
For 4 genes in this experiment