LB with Paraquat dichloride 0.04 mg/ml
Group:
stress
Media:
LB +
Paraquat dichloride (0.04 mg/ml)
Culturing: AzoBra_ML2a, 24 deep-well microplate; Multitron, Aerobic, at 30 (C), shaken=750 rpm
Growth: about 3.9
generations
By: Mark on
5/20/2015
Media components: 10 g/L
Tryptone, 5 g/L
Yeast Extract, 5 g/L
Sodium Chloride
Specific Phenotypes
For 14 genes in this experiment
For stress Paraquat dichloride in Azospirillum brasilense Sp245
For stress Paraquat dichloride across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|
| benzoyl-CoA biosynthesis | 3 | 3 | 2 |
| adipate degradation | 5 | 4 | 2 |
| fatty acid β-oxidation II (plant peroxisome) | 5 | 3 | 2 |
| adipate biosynthesis | 5 | 3 | 2 |
| (8E,10E)-dodeca-8,10-dienol biosynthesis | 11 | 5 | 4 |
| 2-methyl-branched fatty acid β-oxidation | 14 | 9 | 5 |
| L-isoleucine degradation I | 6 | 5 | 2 |
| valproate β-oxidation | 9 | 6 | 3 |
| methyl ketone biosynthesis (engineered) | 6 | 3 | 2 |
| propanoate fermentation to 2-methylbutanoate | 6 | 3 | 2 |
| oleate β-oxidation | 35 | 27 | 11 |
| fatty acid β-oxidation VI (mammalian peroxisome) | 7 | 4 | 2 |
| fatty acid β-oxidation I (generic) | 7 | 3 | 2 |
| benzoyl-CoA degradation I (aerobic) | 7 | 2 | 2 |
| 4-oxopentanoate degradation | 9 | 5 | 2 |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 9 | 3 | 2 |
| phenylacetate degradation I (aerobic) | 9 | 2 | 2 |
| ADP-L-glycero-β-D-manno-heptose biosynthesis | 5 | 5 | 1 |
| glutaryl-CoA degradation | 5 | 3 | 1 |
| (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered) | 5 | 3 | 1 |
| 3-phenylpropanoate degradation | 10 | 4 | 2 |
| 4-hydroxybenzoate biosynthesis III (plants) | 5 | 2 | 1 |
| fatty acid β-oxidation IV (unsaturated, even number) | 5 | 2 | 1 |
| benzoate biosynthesis III (CoA-dependent, non-β-oxidative) | 5 | 1 | 1 |
| pyruvate fermentation to hexanol (engineered) | 11 | 7 | 2 |
| superpathway of phenylethylamine degradation | 11 | 2 | 2 |
| fatty acid salvage | 6 | 5 | 1 |
| pyruvate fermentation to butanol II (engineered) | 6 | 4 | 1 |
| 6-gingerol analog biosynthesis (engineered) | 6 | 2 | 1 |
| superpathway of glyoxylate cycle and fatty acid degradation | 14 | 10 | 2 |
| pyruvate fermentation to butanoate | 7 | 4 | 1 |
| Spodoptera littoralis pheromone biosynthesis | 22 | 3 | 3 |
| L-valine degradation I | 8 | 7 | 1 |
| pyruvate fermentation to butanol I | 8 | 3 | 1 |
| 2-methylpropene degradation | 8 | 2 | 1 |
| superpathway of Clostridium acetobutylicum acidogenic fermentation | 9 | 6 | 1 |
| L-glutamate degradation V (via hydroxyglutarate) | 10 | 5 | 1 |
| methyl tert-butyl ether degradation | 10 | 2 | 1 |
| L-glutamate degradation VII (to butanoate) | 12 | 5 | 1 |
| androstenedione degradation I (aerobic) | 25 | 6 | 2 |
| cannabinoid biosynthesis | 13 | 6 | 1 |
| superpathway of Clostridium acetobutylicum solventogenic fermentation | 13 | 5 | 1 |
| platensimycin biosynthesis | 26 | 6 | 2 |
| (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase) | 13 | 2 | 1 |
| androstenedione degradation II (anaerobic) | 27 | 4 | 2 |
| superpathway of testosterone and androsterone degradation | 28 | 6 | 2 |
| superpathway of cholesterol degradation I (cholesterol oxidase) | 42 | 8 | 3 |
| docosahexaenoate biosynthesis III (6-desaturase, mammals) | 14 | 2 | 1 |
| L-tryptophan degradation III (eukaryotic) | 15 | 4 | 1 |
| superpathway of cholesterol degradation II (cholesterol dehydrogenase) | 47 | 9 | 3 |
| glycerol degradation to butanol | 16 | 10 | 1 |
| crotonate fermentation (to acetate and cyclohexane carboxylate) | 16 | 3 | 1 |
| superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation | 17 | 8 | 1 |
| benzoate fermentation (to acetate and cyclohexane carboxylate) | 17 | 3 | 1 |
| cholesterol degradation to androstenedione I (cholesterol oxidase) | 17 | 2 | 1 |
| 3-hydroxypropanoate/4-hydroxybutanate cycle | 18 | 12 | 1 |
| toluene degradation VI (anaerobic) | 18 | 3 | 1 |
| cholesterol degradation to androstenedione II (cholesterol dehydrogenase) | 22 | 3 | 1 |
| superpathway of cholesterol degradation III (oxidase) | 49 | 5 | 2 |
| photosynthetic 3-hydroxybutanoate biosynthesis (engineered) | 26 | 18 | 1 |
| 1-butanol autotrophic biosynthesis (engineered) | 27 | 19 | 1 |