Experiment set4IT004 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium nitrate nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS23590 -5.7 -3.2 gluconokinase compare
PFLU_RS28695 -4.4 -7.3 phosphoglycerate dehydrogenase compare
PFLU_RS01645 -4.0 -17.3 S41 family peptidase compare
PFLU_RS03645 -3.9 -14.3 tetratricopeptide repeat protein compare
PFLU_RS16785 -3.8 -2.4 GAF domain-containing protein compare
PFLU_RS28645 -3.8 -14.9 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS22595 -3.6 -2.5 OmpA family protein compare
PFLU_RS23920 -3.6 -4.0 septation protein A compare
PFLU_RS23070 -3.4 -1.6 50S ribosomal protein L32 compare
PFLU_RS18700 -3.4 -3.4 hypothetical protein compare
PFLU_RS01690 -3.3 -8.1 nitrogen regulation protein NR(II) compare
PFLU_RS16710 -3.3 -5.0 nitrite reductase small subunit NirD compare
PFLU_RS09670 -3.3 -3.2 integrating conjugative element protein compare
PFLU_RS01605 -3.3 -10.4 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS22740 -3.3 -6.6 phosphoadenylyl-sulfate reductase compare
PFLU_RS24125 -3.2 -8.9 cold-shock protein compare
PFLU_RS09055 -3.2 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS18505 -3.2 -13.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS25760 -3.2 -14.9 glucose-6-phosphate isomerase compare
PFLU_RS02790 -3.2 -2.4 TetR family transcriptional regulator compare
PFLU_RS22105 -3.1 -6.8 cysteine synthase CysM compare
PFLU_RS15990 -3.1 -2.9 SDR family oxidoreductase compare
PFLU_RS12980 -3.1 -11.2 nitrite/sulfite reductase compare
PFLU_RS20540 -3.0 -12.9 phosphoribosylanthranilate isomerase compare
PFLU_RS02490 -3.0 -12.1 phosphoserine phosphatase SerB compare
PFLU_RS25920 -3.0 -3.6 outer membrane protein assembly factor BamE compare
PFLU_RS26545 -2.9 -10.1 sel1 repeat family protein compare
PFLU_RS25360 -2.9 -8.3 glutamate 5-kinase compare
PFLU_RS13120 -2.9 -2.0 hypothetical protein compare
PFLU_RS24330 -2.9 -7.9 phosphogluconate dehydratase compare
PFLU_RS18615 -2.8 -1.9 NADH-quinone oxidoreductase subunit A compare
PFLU_RS01685 -2.8 -5.8 nitrogen regulation protein NR(I) compare
PFLU_RS14550 -2.8 -8.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS25735 -2.8 -9.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS28535 -2.8 -14.3 dihydroxy-acid dehydratase compare
PFLU_RS28315 -2.7 -1.3 response regulator compare
PFLU_RS29880 -2.7 -13.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS31215 -2.7 -3.4 hypothetical protein compare
PFLU_RS27365 -2.7 -8.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS01965 -2.7 -1.8 ATP-dependent protease subunit HslV compare
PFLU_RS06055 -2.6 -1.5 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS01620 -2.6 -8.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS18420 -2.5 -2.8 hypothetical protein compare
PFLU_RS24485 -2.5 -9.8 hypothetical protein compare
PFLU_RS12975 -2.5 -5.5 DUF934 domain-containing protein compare
PFLU_RS01900 -2.5 -7.9 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS29875 -2.5 -12.9 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS22575 -2.5 -7.0 ANTAR domain-containing protein conserved
PFLU_RS29515 -2.5 -9.8 RidA family protein compare
PFLU_RS25640 -2.5 -11.8 ketol-acid reductoisomerase compare
PFLU_RS29885 -2.5 -7.6 LysR family transcriptional regulator compare
PFLU_RS08620 -2.4 -5.3 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS18670 -2.4 -1.6 NADH-quinone oxidoreductase subunit M compare
PFLU_RS04015 -2.4 -3.2 1-phosphofructokinase compare
PFLU_RS28650 -2.4 -6.1 RNA pyrophosphohydrolase compare
PFLU_RS23065 -2.4 -8.6 phosphate acyltransferase PlsX compare
PFLU_RS20510 -2.4 -11.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS06265 -2.3 -15.9 [protein-PII] uridylyltransferase compare
PFLU_RS21360 -2.3 -2.0 MarR family transcriptional regulator compare
PFLU_RS05630 -2.3 -1.6 amino acid ABC transporter ATP-binding protein compare
PFLU_RS00310 -2.3 -1.8 twin transmembrane helix small protein compare
PFLU_RS28965 -2.3 -8.6 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS23725 -2.2 -11.7 glucose-6-phosphate dehydrogenase compare
PFLU_RS04935 -2.2 -5.3 cyclic pyranopterin monophosphate synthase MoaC compare
PFLU_RS28165 -2.2 -11.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS24085 -2.2 -3.6 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS28385 -2.2 -9.6 homoserine O-acetyltransferase compare
PFLU_RS25815 -2.2 -1.7 transcription termination/antitermination protein NusA compare
PFLU_RS00180 -2.2 -6.6 tryptophan synthase subunit beta compare
PFLU_RS08505 -2.2 -6.5 protease HtpX compare
PFLU_RS25755 -2.2 -4.6 pantoate--beta-alanine ligase compare
PFLU_RS23305 -2.1 -9.3 arginine N-succinyltransferase compare
PFLU_RS01960 -2.1 -1.4 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS16715 -2.1 -8.8 nitrite reductase large subunit conserved
PFLU_RS04945 -2.1 -3.0 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS30165 -2.1 -8.1 ParA family protein compare
PFLU_RS04070 -2.0 -5.4 peptide chain release factor 3 compare
PFLU_RS21495 -2.0 -3.9 TlpA family protein disulfide reductase compare
PFLU_RS28655 -2.0 -11.1 HAD family hydrolase compare
PFLU_RS04470 -2.0 -9.3 histidinol dehydrogenase compare
PFLU_RS23585 -2.0 -7.1 GntP family permease compare
PFLU_RS26595 -2.0 -1.9 lipoprotein compare
PFLU_RS00175 -1.9 -8.1 tryptophan synthase subunit alpha compare
PFLU_RS28195 -1.9 -10.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS24090 -1.9 -3.3 Holliday junction branch migration protein RuvA compare
PFLU_RS00415 -1.9 -2.2 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS29095 -1.9 -14.0 polyphosphate kinase 1 compare
PFLU_RS14810 -1.9 -2.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS01610 -1.9 -7.9 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS22520 -1.9 -2.6 GntR family transcriptional regulator compare
PFLU_RS05965 -1.9 -1.6 hypothetical protein compare
PFLU_RS23310 -1.9 -7.4 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS26090 -1.8 -3.0 methyl-accepting chemotaxis protein compare
PFLU_RS04325 -1.8 -11.4 ribonuclease G compare
PFLU_RS25715 -1.8 -8.0 RNA polymerase-binding protein DksA compare
PFLU_RS07275 -1.8 -2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS18645 -1.8 -2.8 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS12635 -1.8 -2.4 conjugal transfer protein TraR compare
PFLU_RS02590 -1.8 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28690 -1.8 -9.3 FAD-binding oxidoreductase compare
PFLU_RS29275 -1.7 -5.7 DUF484 family protein compare
PFLU_RS04835 -1.7 -1.1 hypothetical protein compare
PFLU_RS27650 -1.7 -9.0 biotin synthase BioB compare
PFLU_RS13540 -1.7 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS19175 -1.7 -6.9 trigger factor compare
PFLU_RS03610 -1.7 -5.6 redox-regulated ATPase YchF compare
PFLU_RS19580 -1.7 -2.3 helix-turn-helix transcriptional regulator compare
PFLU_RS01895 -1.7 -4.4 phosphoribosyl-ATP diphosphatase compare
PFLU_RS22395 -1.7 -4.1 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS26770 -1.7 -8.3 DedA family protein compare
PFLU_RS24205 -1.6 -1.8 DNA binding protein compare
PFLU_RS07645 -1.6 -3.7 hypothetical protein compare
PFLU_RS27370 -1.6 -7.9 anthranilate phosphoribosyltransferase compare
PFLU_RS17060 -1.6 -2.0 monooxygenase compare
PFLU_RS20690 -1.6 -3.6 hypothetical protein compare
PFLU_RS21300 -1.6 -3.5 cysteine hydrolase compare
PFLU_RS04465 -1.6 -6.0 ATP phosphoribosyltransferase compare
PFLU_RS29490 -1.6 -6.8 ribonuclease PH compare
PFLU_RS31475 -1.6 -2.2 hypothetical protein compare
PFLU_RS20515 -1.6 -4.7 amidophosphoribosyltransferase compare
PFLU_RS24790 -1.6 -4.5 tetratricopeptide repeat protein compare
PFLU_RS21985 -1.6 -3.2 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS04435 -1.6 -6.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS20580 -1.6 -7.8 3-isopropylmalate dehydratase large subunit compare
PFLU_RS03970 -1.5 -5.2 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS27375 -1.5 -4.3 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS25730 -1.5 -9.6 PAS domain S-box protein compare
PFLU_RS23010 -1.5 -7.0 radical SAM protein compare
PFLU_RS25595 -1.5 -1.4 exodeoxyribonuclease V subunit gamma compare
PFLU_RS08625 -1.5 -2.9 molybdenum cofactor biosynthesis protein B compare
PFLU_RS01315 -1.5 -2.5 Hsp33 family molecular chaperone HslO compare
PFLU_RS07785 -1.5 -7.5 VacJ family lipoprotein compare
PFLU_RS23235 -1.4 -3.0 Arc family DNA-binding protein compare
PFLU_RS28390 -1.4 -5.4 methionine biosynthesis protein MetW compare
PFLU_RS27580 -1.4 -2.3 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
PFLU_RS19165 -1.4 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS27630 -1.4 -4.2 dethiobiotin synthase compare
PFLU_RS02180 -1.4 -1.1 thioredoxin TrxC compare
PFLU_RS30790 -1.4 -1.7 hypothetical protein compare
PFLU_RS04715 -1.4 -4.5 D-alanine--D-alanine ligase compare
PFLU_RS07255 -1.4 -2.2 sulfurtransferase TusA family protein compare
PFLU_RS03770 -1.4 -7.1 sulfate adenylyltransferase subunit CysN compare
PFLU_RS00535 -1.4 -2.0 DUF1127 domain-containing protein compare
PFLU_RS14680 -1.4 -3.5 cbb3-type cytochrome c oxidase subunit 3 compare
PFLU_RS02825 -1.4 -1.3 phosphate starvation-inducible protein PsiF compare
PFLU_RS19550 -1.4 -1.0 ABC transporter ATP-binding protein compare
PFLU_RS20970 -1.4 -1.2 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS09500 -1.4 -1.1 hypothetical protein compare
PFLU_RS24765 -1.4 -9.4 2-isopropylmalate synthase compare
PFLU_RS18665 -1.4 -3.5 NADH-quinone oxidoreductase subunit L compare
PFLU_RS25225 -1.3 -5.8 disulfide bond formation protein B compare
PFLU_RS25585 -1.3 -1.7 exodeoxyribonuclease V subunit alpha compare
PFLU_RS19170 -1.3 -3.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS25875 -1.3 -2.3 transcription elongation factor GreA compare
PFLU_RS22375 -1.3 -5.8 cbb3-type cytochrome oxidase assembly protein CcoS compare
PFLU_RS02365 -1.3 -7.2 glycosyltransferase compare
PFLU_RS27645 -1.3 -7.4 8-amino-7-oxononanoate synthase compare
PFLU_RS27305 -1.3 -4.3 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS06650 -1.3 -2.9 DUF2288 domain-containing protein compare
PFLU_RS20625 -1.3 -1.8 TetR/AcrR family transcriptional regulator compare
PFLU_RS16720 -1.3 -5.9 bifunctional nitrate reductase/sulfite reductase flavoprotein subunit alpha conserved
PFLU_RS04445 -1.3 -4.4 ABC transporter substrate-binding protein compare
PFLU_RS23380 -1.3 -0.9 HAD-IB family hydrolase compare
PFLU_RS22580 -1.3 -7.4 NarK/NasA family nitrate transporter conserved
PFLU_RS18675 -1.3 -2.5 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS03665 -1.3 -2.8 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS20565 -1.3 -6.9 3-isopropylmalate dehydrogenase compare
PFLU_RS04385 -1.3 -5.5 RNase adapter RapZ compare
PFLU_RS09980 -1.2 -8.2 peptidase S41 compare
PFLU_RS19855 -1.2 -1.2 DUF4398 domain-containing protein compare
PFLU_RS04565 -1.2 -1.0 TMEM165/GDT1 family protein compare
PFLU_RS19610 -1.2 -2.0 hypothetical protein compare
PFLU_RS03765 -1.2 -5.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS02625 -1.2 -7.3 ribonuclease R compare
PFLU_RS31440 -1.2 -0.9 hypothetical protein compare
PFLU_RS22070 -1.2 -2.6 phosphoribosylglycinamide formyltransferase compare
PFLU_RS17525 -1.2 -1.7 NUDIX domain-containing protein compare
PFLU_RS24095 -1.2 -2.4 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS18640 -1.2 -3.1 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS20730 -1.2 -1.4 hypothetical protein compare
PFLU_RS13640 -1.2 -1.9 isochorismatase family protein compare
PFLU_RS13365 -1.2 -1.2 hypothetical protein compare
PFLU_RS02310 -1.2 -3.1 LPS kinase compare
PFLU_RS09720 -1.1 -1.5 single-stranded DNA-binding protein compare
PFLU_RS24160 -1.1 -4.6 HAMP domain-containing protein compare
PFLU_RS26735 -1.1 -4.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS26905 -1.1 -5.2 transcriptional regulator NrdR compare
PFLU_RS02775 -1.1 -1.4 urease accessory protein UreF compare
PFLU_RS14830 -1.1 -4.6 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PFLU_RS20575 -1.1 -2.9 3-isopropylmalate dehydratase small subunit compare
PFLU_RS09540 -1.1 -1.6 TIGR03745 family integrating conjugative element membrane protein compare
PFLU_RS29550 -1.1 -4.5 ATP-dependent DNA helicase RecG compare
PFLU_RS07225 -1.1 -7.2 L-aspartate oxidase compare
PFLU_RS09705 -1.1 -3.3 hypothetical protein compare
PFLU_RS15660 -1.1 -3.2 helix-turn-helix transcriptional regulator compare
PFLU_RS06555 -1.1 -4.9 OmpA family protein compare
PFLU_RS13945 -1.1 -1.4 hypothetical protein compare
PFLU_RS05050 -1.1 -1.4 response regulator transcription factor compare
PFLU_RS05885 -1.1 -3.9 recombinase RecA compare
PFLU_RS07650 -1.1 -6.6 fatty acid oxidation complex subunit alpha FadB compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For nitrogen source D-Glucose across organisms