Experiment set4IT004 for Methanococcus maripaludis JJ

Compare to:

H2 N-free with 2mM Adenosine

200 most important genes:

  gene name fitness t score description  
MMJJ_RS08870 -4.1 -0.8 2-isopropylmalate synthase compare
MMJJ_RS02045 -3.9 -1.9 molybdenum cofactor guanylyltransferase compare
MMJJ_RS00235 -3.9 -18.1 hypothetical protein compare
MMJJ_RS03055 -3.8 -1.7 hypothetical protein compare
MMJJ_RS08035 -3.7 -5.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS03295 -3.7 -13.0 PHP domain-containing protein compare
MMJJ_RS08810 -3.7 -0.8 DUF4040 domain-containing protein compare
MMJJ_RS05450 -3.6 -14.8 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS05595 -3.6 -1.8 hypothetical protein compare
MMJJ_RS00570 -3.6 -1.3 ribonuclease P compare
MMJJ_RS05115 -3.6 -5.8 P-II family nitrogen regulator compare
MMJJ_RS04050 -3.6 -1.3 dihydroneopterin aldolase family protein compare
MMJJ_RS04485 -3.5 -7.5 riboflavin synthase compare
MMJJ_RS04200 -3.5 -4.8 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS04565 -3.5 -1.9 sirohydrochlorin nickelochelatase compare
MMJJ_RS06805 -3.4 -1.7 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS06050 -3.3 -8.0 molybdopterin molybdotransferase MoeA compare
MMJJ_RS04800 -3.2 -3.9 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS06725 -3.2 -9.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06020 -3.2 -3.8 hypothetical protein compare
MMJJ_RS01935 -3.2 -2.1 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS02935 -3.2 -2.2 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS09095 -3.2 -6.3 MMPL family transporter compare
MMJJ_RS06155 -3.2 -3.1 phosphatidylglycerophosphatase A compare
MMJJ_RS04790 -3.1 -1.9 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06015 -3.1 -7.5 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS00275 -3.1 -1.4 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06930 -3.1 -1.5 type II methionyl aminopeptidase compare
MMJJ_RS06000 -3.0 -3.3 cation:proton antiporter subunit C compare
MMJJ_RS07410 -3.0 -2.0 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS02920 -3.0 -1.3 30S ribosomal protein S27ae compare
MMJJ_RS06265 -3.0 -10.5 8-amino-7-oxononanoate synthase compare
MMJJ_RS04150 -3.0 -1.4 DUF5379 domain-containing protein compare
MMJJ_RS05575 -3.0 -2.7 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS00265 -3.0 -5.4 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS00645 -3.0 -8.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS09135 -3.0 -6.0 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS03670 -2.9 -2.9 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS08130 -2.9 -0.6 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS07935 -2.9 -0.8 protein fwdD compare
MMJJ_RS05445 -2.9 -1.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS09100 -2.9 -9.5 COG1361 S-layer family protein compare
MMJJ_RS00600 -2.9 -2.0 hydroxymethylbilane synthase compare
MMJJ_RS06040 -2.9 -2.5 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS05110 -2.9 -15.2 ammonium transporter conserved
MMJJ_RS03580 -2.8 -1.7 TIGR00303 family protein compare
MMJJ_RS04145 -2.8 -6.8 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS04010 -2.8 -7.1 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS03270 -2.8 -1.6 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS00345 -2.8 -9.0 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS08020 -2.8 -9.2 nucleotidyltransferase domain-containing protein compare
MMJJ_RS04620 -2.8 -1.3 homocitrate synthase family protein compare
MMJJ_RS06260 -2.8 -6.2 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS01415 -2.8 -1.4 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS05655 -2.8 -3.8 HisA/HisF family protein compare
MMJJ_RS07375 -2.7 -7.1 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS03895 -2.7 -2.3 hydrogenase expression/formation protein HypE compare
MMJJ_RS06655 -2.7 -9.1 transcriptional regulator compare
MMJJ_RS01750 -2.7 -1.4 ferrous iron transport protein A compare
MMJJ_RS06010 -2.7 -3.7 hypothetical protein compare
MMJJ_RS07980 -2.7 -9.8 biotin synthase BioB compare
MMJJ_RS08080 -2.7 -6.5 TIGR00300 family protein compare
MMJJ_RS03615 -2.7 -2.0 cobalt-precorrin-8 methylmutase compare
MMJJ_RS04670 -2.7 -5.2 DUF2117 domain-containing protein compare
MMJJ_RS06695 -2.7 -2.0 amidohydrolase compare
MMJJ_RS02275 -2.7 -3.9 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03620 -2.7 -4.5 DUF2097 domain-containing protein compare
MMJJ_RS06030 -2.6 -3.2 4Fe-4S binding protein compare
MMJJ_RS03760 -2.6 -2.3 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS05935 -2.6 -1.6 Era-like GTP-binding protein compare
MMJJ_RS08320 -2.6 -1.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS08575 -2.6 -2.9 hypothetical protein compare
MMJJ_RS07485 -2.6 -7.7 DedA family protein compare
MMJJ_RS03995 -2.6 -4.0 PHP domain-containing protein compare
MMJJ_RS07005 -2.6 -4.6 transcription factor S compare
MMJJ_RS03170 -2.6 -6.7 DUF5612 domain-containing protein compare
MMJJ_RS09190 -2.6 -0.9 tryptophan synthase subunit beta compare
MMJJ_RS04995 -2.6 -3.7 Tfx family DNA-binding protein compare
MMJJ_RS05260 -2.6 -4.2 ATP-grasp domain-containing protein compare
MMJJ_RS03820 -2.5 -1.8 hydrogenase formation protein HypD compare
MMJJ_RS04520 -2.5 -4.8 coenzyme F430 synthase compare
MMJJ_RS07995 -2.5 -4.8 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS05540 -2.5 -13.5 LysR family transcriptional regulator compare
MMJJ_RS04040 -2.5 -5.6 prefoldin subunit beta compare
MMJJ_RS05070 -2.5 -1.2 DNA primase catalytic subunit PriS compare
MMJJ_RS02090 -2.5 -3.7 tyramine--L-glutamate ligase compare
MMJJ_RS05810 -2.5 -3.8 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS06905 -2.5 -1.0 hypothetical protein compare
MMJJ_RS04685 -2.5 -6.4 carbamoyltransferase HypF compare
MMJJ_RS06175 -2.5 -1.1 DUF1743 domain-containing protein compare
MMJJ_RS06650 -2.5 -12.6 cell division protein FtsZ compare
MMJJ_RS06700 -2.5 -3.9 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS08855 -2.4 -3.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS06730 -2.4 -5.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS06485 -2.4 -1.4 phosphoglycerate kinase compare
MMJJ_RS02035 -2.4 -3.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS03245 -2.4 -1.0 UMP kinase compare
MMJJ_RS03185 -2.4 -1.2 alanine--tRNA ligase compare
MMJJ_RS06510 -2.4 -1.7 LL-diaminopimelate aminotransferase compare
MMJJ_RS06705 -2.4 -2.3 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS07870 -2.4 -9.8 ABC transporter substrate-binding protein compare
MMJJ_RS01565 -2.4 -5.2 TIGR00267 family protein compare
MMJJ_RS03005 -2.4 -1.5 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS08770 -2.3 -6.4 HAD family hydrolase compare
MMJJ_RS04980 -2.3 -3.2 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS01820 -2.3 -3.2 MJ1244 family protein compare
MMJJ_RS07160 -2.3 -8.1 M20 family metallo-hydrolase compare
MMJJ_RS03155 -2.3 -8.3 hypothetical protein compare
MMJJ_RS02055 -2.3 -4.1 GTP 3',8-cyclase MoaA compare
MMJJ_RS06025 -2.3 -7.8 4Fe-4S binding protein compare
MMJJ_RS03490 -2.3 -1.4 ribonuclease VapC compare
MMJJ_RS07280 -2.3 -7.8 phosphomannomutase/phosphoglucomutase compare
MMJJ_RS03230 -2.3 -2.6 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS03150 -2.3 -3.7 2-phospho-L-lactate transferase compare
MMJJ_RS04615 -2.3 -3.7 methanogenesis marker 3 protein compare
MMJJ_RS06185 -2.3 -4.5 cobalamin biosynthesis protein compare
MMJJ_RS06625 -2.2 -1.3 pyruvate synthase subunit PorB compare
MMJJ_RS07155 -2.2 -8.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS04700 -2.2 -4.0 deoxyhypusine synthase compare
MMJJ_RS02200 -2.2 -7.1 chorismate pyruvate-lyase family protein compare
MMJJ_RS06270 -2.2 -5.9 dethiobiotin synthase compare
MMJJ_RS00205 -2.2 -3.0 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS01810 -2.2 -1.1 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06600 -2.2 -1.3 DUF555 domain-containing protein compare
MMJJ_RS07715 -2.2 -1.6 UbiD family decarboxylase compare
MMJJ_RS00475 -2.2 -1.2 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS08925 -2.2 -8.2 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS03650 -2.2 -6.0 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS06945 -2.2 -8.7 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMJJ_RS05930 -2.2 -1.0 cell division protein SepF compare
MMJJ_RS01865 -2.2 -3.3 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS06390 -2.2 -1.3 NADPH-dependent F420 reductase compare
MMJJ_RS08330 -2.2 -1.8 SufD family Fe-S cluster assembly protein compare
MMJJ_RS06180 -2.2 -1.3 tryptophan--tRNA ligase compare
MMJJ_RS06220 -2.2 -3.6 polyamine aminopropyltransferase compare
MMJJ_RS06865 -2.2 -1.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS01870 -2.2 -1.0 methanogenesis marker 15 protein compare
MMJJ_RS05225 -2.2 -0.9 Gar1/Naf1 family protein compare
MMJJ_RS08620 -2.2 -3.2 DUF373 family protein compare
MMJJ_RS06005 -2.2 -5.9 energy conserving hydrogenase EhbF compare
MMJJ_RS06035 -2.2 -6.9 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS01600 -2.1 -1.6 radical SAM protein compare
MMJJ_RS01350 -2.1 -3.8 sodium:proton antiporter compare
MMJJ_RS05295 -2.1 -10.5 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS08500 -2.1 -4.3 L-sulfolactate dehydrogenase compare
MMJJ_RS03060 -2.1 -2.1 methanogenesis marker 7 protein compare
MMJJ_RS06715 -2.1 -8.0 lactaldehyde dehydrogenase compare
MMJJ_RS06630 -2.1 -6.5 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS06875 -2.1 -1.8 hypothetical protein compare
MMJJ_RS08180 -2.1 -6.6 ABC transporter ATP-binding protein compare
MMJJ_RS08430 -2.1 -5.7 small nuclear ribonucleoprotein compare
MMJJ_RS08185 -2.1 -8.3 ABC transporter permease compare
MMJJ_RS08095 -2.1 -2.5 cobyric acid synthase CobQ compare
MMJJ_RS06400 -2.1 -4.2 FumA C-terminus/TtdB family hydratase beta subunit compare
MMJJ_RS00355 -2.0 -1.5 ribonuclease P protein component 4 compare
MMJJ_RS04155 -2.0 -3.2 hypothetical protein compare
MMJJ_RS03065 -2.0 -9.2 CBS domain-containing protein compare
MMJJ_RS03660 -2.0 -2.3 DUF447 family protein compare
MMJJ_RS07585 -2.0 -6.4 DHH family phosphoesterase compare
MMJJ_RS00210 -2.0 -1.3 DUF530 family protein compare
MMJJ_RS01915 -2.0 -6.8 precorrin-6A reductase compare
MMJJ_RS07015 -2.0 -0.7 PFL family protein compare
MMJJ_RS06840 -2.0 -1.9 nickel-dependent hydrogenase large subunit compare
MMJJ_RS04655 -2.0 -4.9 FAD-dependent oxidoreductase compare
MMJJ_RS06170 -2.0 -7.1 hypothetical protein compare
MMJJ_RS05950 -2.0 -1.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS00080 -2.0 -9.3 DUF166 domain-containing protein compare
MMJJ_RS01410 -1.9 -3.4 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS05720 -1.9 -1.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS08335 -1.9 -1.3 ABC transporter ATP-binding protein compare
MMJJ_RS08850 -1.9 -1.0 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS00025 -1.9 -7.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
MMJJ_RS08000 -1.9 -6.2 HesA/MoeB/ThiF family protein compare
MMJJ_RS05650 -1.9 -1.8 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS01360 -1.9 -0.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS06575 -1.9 -2.0 prephenate dehydrogenase compare
MMJJ_RS06240 -1.9 -1.6 dihydropteroate synthase-like protein compare
MMJJ_RS00270 -1.8 -2.0 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS07785 -1.8 -1.4 fumarate reductase subunit A compare
MMJJ_RS05870 -1.8 -3.8 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMJJ_RS05610 -1.8 -2.8 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS04110 -1.8 -5.1 hypothetical protein compare
MMJJ_RS00560 -1.8 -2.2 homoisocitrate dehydrogenase compare
MMJJ_RS07360 -1.8 -0.9 TIGR00269 family protein compare
MMJJ_RS08055 -1.8 -4.5 methanogenesis marker 14 protein compare
MMJJ_RS06940 -1.8 -6.0 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS00370 -1.8 -0.7 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS08710 -1.8 -6.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMJJ_RS03070 -1.8 -2.8 MetS family NSS transporter small subunit compare
MMJJ_RS07455 -1.8 -3.8 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS06565 -1.8 -5.6 segregation/condensation protein A compare
MMJJ_RS07945 -1.8 -1.7 4Fe-4S binding protein compare
MMJJ_RS09035 -1.8 -3.6 OB-fold nucleic acid binding domain-containing protein compare
MMJJ_RS03810 -1.8 -1.9 AIR synthase-related protein compare
MMJJ_RS07265 -1.7 -7.3 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS08750 -1.7 -9.9 glycosyltransferase compare
MMJJ_RS04595 -1.7 -2.2 hypothetical protein compare
MMJJ_RS08155 -1.7 -2.3 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS00360 -1.7 -1.3 adenosylhomocysteinase compare
MMJJ_RS00935 -1.7 -5.9 nickel pincer cofactor biosynthesis protein LarB compare


Specific Phenotypes

For 23 genes in this experiment

For nitrogen source Adenosine in Methanococcus maripaludis JJ

For nitrogen source Adenosine across organisms