Experiment set4IT003 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with ammonium iron(II) sulfate hexahydrate 2.5 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS02445 -4.9 -3.4 membrane protein insertion efficiency factor YidD compare
LRK54_RS10660 -4.4 -3.0 DUF4156 domain-containing protein compare
LRK54_RS17505 -4.2 -2.9 preprotein translocase subunit SecG compare
LRK54_RS16155 -3.9 -2.7 folate-binding protein compare
LRK54_RS04305 -3.8 -2.6 shikimate kinase compare
LRK54_RS14695 -3.7 -6.7 rhomboid family intramembrane serine protease compare
LRK54_RS16615 -3.6 -2.5 phosphopyruvate hydratase compare
LRK54_RS02275 -3.6 -3.5 enoyl-CoA hydratase-related protein compare
LRK54_RS06885 -3.5 -4.2 rhodanese-like domain-containing protein compare
LRK54_RS02550 -3.5 -4.1 iron-sulfur cluster assembly accessory protein compare
LRK54_RS14590 -3.5 -5.3 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS04585 -3.5 -2.4 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS10150 -3.5 -2.4 DNA topoisomerase I compare
LRK54_RS00620 -3.4 -7.3 FtsH protease activity modulator HflK compare
LRK54_RS11375 -3.4 -5.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS00440 -3.4 -3.3 high frequency lysogenization protein HflD compare
LRK54_RS16660 -3.4 -4.7 VTT domain-containing protein compare
LRK54_RS00690 -3.4 -8.7 2-methylcitrate synthase compare
LRK54_RS06755 -3.4 -16.8 LTA synthase family protein compare
LRK54_RS11385 -3.3 -3.2 co-chaperone DjlA compare
LRK54_RS13830 -3.3 -5.5 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS12855 -3.3 -5.4 PTS fructose transporter subunit IIA compare
LRK54_RS02895 -3.3 -4.5 rhomboid family intramembrane serine protease compare
LRK54_RS16535 -3.3 -10.9 VIT family protein compare
LRK54_RS16865 -3.2 -7.8 protein phosphatase 2C domain-containing protein compare
LRK54_RS03110 -3.2 -8.3 nucleotidyltransferase family protein compare
LRK54_RS05740 -3.2 -6.5 phosphoglycerate kinase compare
LRK54_RS04350 -3.2 -3.8 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS02440 -3.2 -2.2 RNA polymerase-binding protein DksA compare
LRK54_RS04720 -3.1 -6.0 phosphoribosylformylglycinamidine synthase compare
LRK54_RS12190 -3.1 -7.5 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS00615 -3.1 -6.0 protease modulator HflC compare
LRK54_RS06470 -3.1 -3.7 carboxy terminal-processing peptidase compare
LRK54_RS06610 -3.1 -18.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS16940 -3.1 -3.0 RNA polymerase sigma factor RpoE compare
LRK54_RS00085 -3.1 -2.1 tetratricopeptide repeat protein compare
LRK54_RS11565 -3.1 -4.1 anthranilate phosphoribosyltransferase compare
LRK54_RS07300 -3.1 -18.1 TonB-dependent receptor compare
LRK54_RS02285 -3.0 -11.0 hydroxymethylglutaryl-CoA lyase compare
LRK54_RS14825 -3.0 -2.9 protease HtpX compare
LRK54_RS02050 -3.0 -11.8 thiamine pyrophosphate-dependent enzyme compare
LRK54_RS12590 -3.0 -8.6 molybdopterin-dependent oxidoreductase compare
LRK54_RS00490 -3.0 -1.7 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
LRK54_RS09000 -3.0 -11.8 HAMP domain-containing histidine kinase compare
LRK54_RS12860 -3.0 -4.5 RNase adapter RapZ compare
LRK54_RS11170 -2.9 -2.9 NADP-dependent malic enzyme compare
LRK54_RS08585 -2.9 -18.5 RimK family alpha-L-glutamate ligase compare
LRK54_RS15020 -2.9 -17.2 polyphosphate kinase 1 compare
LRK54_RS05785 -2.9 -7.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS11975 -2.9 -3.4 SLC13 family permease compare
LRK54_RS09805 -2.9 -5.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS11290 -2.8 -1.9 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS06675 -2.8 -7.7 TetR/AcrR family transcriptional regulator compare
LRK54_RS05495 -2.8 -6.4 met regulon transcriptional regulator MetJ compare
LRK54_RS16875 -2.8 -15.8 kinase/pyrophosphorylase compare
LRK54_RS01295 -2.8 -2.7 DUF6165 family protein compare
LRK54_RS05415 -2.8 -5.3 TetR/AcrR family transcriptional regulator compare
LRK54_RS02090 -2.8 -6.7 NAD-glutamate dehydrogenase compare
LRK54_RS15265 -2.8 -11.0 acetyl-CoA C-acyltransferase compare
LRK54_RS16720 -2.7 -8.4 trigger factor compare
LRK54_RS12945 -2.7 -10.1 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS12865 -2.7 -7.2 HPr(Ser) kinase/phosphatase compare
LRK54_RS12595 -2.7 -1.9 (2Fe-2S)-binding protein compare
LRK54_RS16665 -2.7 -9.6 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS05200 -2.7 -4.1 hypothetical protein compare
LRK54_RS00345 -2.7 -4.8 TraB/GumN family protein compare
LRK54_RS08750 -2.7 -1.8 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS03710 -2.7 -7.9 tetratricopeptide repeat protein compare
LRK54_RS18050 -2.6 -12.7 lipopolysaccharide assembly protein LapB compare
LRK54_RS00675 -2.6 -5.8 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS02535 -2.6 -5.5 50S ribosomal protein L9 compare
LRK54_RS01285 -2.6 -3.1 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS15035 -2.6 -5.8 M48 family metalloprotease compare
LRK54_RS13910 -2.6 -6.4 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS02325 -2.6 -3.0 SDR family oxidoreductase compare
LRK54_RS12670 -2.5 -4.2 glycosyltransferase compare
LRK54_RS13760 -2.5 -7.7 trypsin-like peptidase domain-containing protein compare
LRK54_RS10950 -2.5 -11.7 S41 family peptidase compare
LRK54_RS02460 -2.5 -9.3 phosphoglycolate phosphatase compare
LRK54_RS05985 -2.5 -1.7 response regulator transcription factor compare
LRK54_RS07215 -2.5 -4.8 cytochrome c4 compare
LRK54_RS03290 -2.5 -1.7 RIP metalloprotease RseP compare
LRK54_RS00670 -2.5 -5.1 OmpA family protein compare
LRK54_RS16600 -2.5 -11.6 aminopeptidase P family protein compare
LRK54_RS16110 -2.5 -12.0 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK54_RS13780 -2.5 -7.7 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS02180 -2.5 -7.6 UvrD-helicase domain-containing protein compare
LRK54_RS03895 -2.5 -11.8 lipopolysaccharide biosynthesis protein compare
LRK54_RS10185 -2.5 -16.2 RDD family protein compare
LRK54_RS05630 -2.4 -6.6 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS00695 -2.4 -1.7 methylisocitrate lyase compare
LRK54_RS02495 -2.4 -6.2 50S ribosomal protein L19 compare
LRK54_RS02185 -2.4 -4.5 exodeoxyribonuclease V subunit alpha compare
LRK54_RS01685 -2.4 -12.1 tryptophan synthase subunit beta compare
LRK54_RS16755 -2.4 -3.2 SurA N-terminal domain-containing protein compare
LRK54_RS00705 -2.3 -10.0 alkyl hydroperoxide reductase subunit C compare
LRK54_RS16655 -2.3 -3.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS05530 -2.3 -2.2 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK54_RS02070 -2.3 -2.2 acyl-CoA dehydrogenase family protein compare
LRK54_RS05655 -2.3 -1.6 ABC transporter permease compare
LRK54_RS11175 -2.3 -8.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS17270 -2.3 -2.2 DNA translocase FtsK compare
LRK54_RS07075 -2.3 -9.9 magnesium-translocating P-type ATPase compare
LRK54_RS05650 -2.3 -2.7 ABC transporter ATP-binding protein compare
LRK54_RS12460 -2.2 -3.0 hypothetical protein compare
LRK54_RS18055 -2.2 -5.3 glycosyltransferase family 4 protein compare
LRK54_RS07980 -2.2 -3.0 nitrogen regulation protein NR(I) compare
LRK54_RS02175 -2.2 -9.5 exodeoxyribonuclease V subunit gamma compare
LRK54_RS16650 -2.2 -8.0 5'/3'-nucleotidase SurE compare
LRK54_RS03405 -2.2 -8.3 ribonuclease G compare
LRK54_RS16730 -2.2 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS00405 -2.2 -4.3 FHA domain-containing protein compare
LRK54_RS11765 -2.2 -8.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LRK54_RS17135 -2.2 -1.5 hypothetical protein compare
LRK54_RS05980 -2.1 -1.5 ATP-binding protein compare
LRK54_RS16735 -2.1 -13.0 endopeptidase La compare
LRK54_RS00815 -2.1 -5.9 pseudouridine synthase compare
LRK54_RS05535 -2.1 -5.5 glycosyltransferase family 2 protein compare
LRK54_RS16740 -2.1 -3.1 HU family DNA-binding protein compare
LRK54_RS06875 -2.1 -1.5 YiiD C-terminal domain-containing protein compare
LRK54_RS17905 -2.1 -2.0 NfuA family Fe-S biogenesis protein compare
LRK54_RS17215 -2.0 -2.4 cytochrome-c oxidase, cbb3-type subunit III compare
LRK54_RS00775 -2.0 -9.5 translational GTPase TypA compare
LRK54_RS01680 -2.0 -7.2 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS04710 -2.0 -3.3 glycosyltransferase family 2 protein compare
LRK54_RS00305 -2.0 -11.8 asparagine synthase B compare
LRK54_RS14460 -2.0 -8.7 septum site-determining protein MinD compare
LRK54_RS00320 -2.0 -3.0 phosphoglycerate mutase compare
LRK54_RS06820 -2.0 -2.7 Fis family transcriptional regulator compare
LRK54_RS03675 -2.0 -1.9 redox-regulated ATPase YchF compare
LRK54_RS12875 -2.0 -8.7 RNA polymerase factor sigma-54 compare
LRK54_RS10355 -1.9 -3.7 threonine synthase compare
LRK54_RS04250 -1.9 -12.8 PilT/PilU family type 4a pilus ATPase compare
LRK54_RS05635 -1.9 -9.9 dehydrogenase compare
LRK54_RS13915 -1.9 -13.1 beta-ketoacyl-ACP synthase I compare
LRK54_RS05550 -1.9 -1.8 FAD-binding protein compare
LRK54_RS12295 -1.9 -4.5 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS02855 -1.9 -5.3 type I restriction-modification system subunit M compare
LRK54_RS06795 -1.9 -6.7 type II 3-dehydroquinate dehydratase compare
LRK54_RS00680 -1.9 -10.6 TerC family protein compare
LRK54_RS16955 -1.9 -11.5 translation elongation factor 4 compare
LRK54_RS18060 -1.9 -4.8 polysaccharide biosynthesis protein compare
LRK54_RS05610 -1.9 -8.8 GtrA family protein compare
LRK54_RS03125 -1.9 -1.8 preprotein translocase subunit YajC compare
LRK54_RS00805 -1.9 -3.7 segregation/condensation protein A compare
LRK54_RS08520 -1.9 -13.4 ATP-dependent protease ATPase subunit HslU compare
LRK54_RS06685 -1.9 -13.6 TolC family outer membrane protein compare
LRK54_RS11560 -1.9 -3.7 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS11770 -1.8 -12.4 outer membrane lipid asymmetry maintenance protein MlaD compare
LRK54_RS05670 -1.8 -5.9 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS05735 -1.8 -10.4 maleylacetoacetate isomerase compare
LRK54_RS04630 -1.8 -1.2 energy-dependent translational throttle protein EttA compare
LRK54_RS03925 -1.8 -10.5 glycosyltransferase family 4 protein compare
LRK54_RS07285 -1.8 -15.5 sulfatase-like hydrolase/transferase compare
LRK54_RS14480 -1.8 -5.7 response regulator transcription factor compare
LRK54_RS05615 -1.8 -10.9 hypothetical protein compare
LRK54_RS17225 -1.8 -1.7 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS12005 -1.8 -8.1 30S ribosomal protein S6--L-glutamate ligase compare
LRK54_RS04365 -1.8 -1.0 H-NS histone family protein compare
LRK54_RS00750 -1.8 -2.2 response regulator transcription factor compare
LRK54_RS02380 -1.8 -6.5 argininosuccinate lyase compare
LRK54_RS11570 -1.8 -4.0 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS12305 -1.7 -9.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS06720 -1.7 -10.5 glycosyltransferase compare
LRK54_RS12580 -1.7 -3.2 hypothetical protein compare
LRK54_RS06415 -1.7 -1.9 hypothetical protein compare
LRK54_RS10065 -1.7 -3.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS10640 -1.7 -4.0 SCP2 sterol-binding domain-containing protein compare
LRK54_RS10570 -1.7 -4.4 accessory factor UbiK family protein compare
LRK54_RS03200 -1.7 -7.2 integration host factor subunit alpha compare
LRK54_RS03745 -1.7 -7.4 NAD(P)H:quinone oxidoreductase compare
LRK54_RS14465 -1.7 -5.4 septum site-determining protein MinC compare
LRK54_RS10075 -1.7 -3.6 tetratricopeptide repeat protein compare
LRK54_RS11760 -1.7 -9.8 ATP-binding cassette domain-containing protein compare
LRK54_RS06785 -1.6 -1.1 protein-disulfide reductase DsbD compare
LRK54_RS12300 -1.6 -5.6 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS08595 -1.6 -8.1 shikimate dehydrogenase compare
LRK54_RS00175 -1.6 -1.6 transposase compare
LRK54_RS11785 -1.6 -11.1 VacJ family lipoprotein compare
LRK54_RS02335 -1.6 -7.0 FUSC family protein compare
LRK54_RS06495 -1.6 -10.7 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS03105 -1.6 -10.0 phosphotransferase compare
LRK54_RS14100 -1.6 -11.2 cytochrome b compare
LRK54_RS10465 -1.6 -12.8 M61 family metallopeptidase compare
LRK54_RS00080 -1.6 -7.6 helix-turn-helix domain-containing protein compare
LRK54_RS05665 -1.6 -5.0 dTDP-glucose 4,6-dehydratase compare
LRK54_RS16240 -1.6 -10.7 formimidoylglutamate deiminase compare
LRK54_RS15095 -1.6 -6.6 ferredoxin family protein compare
LRK54_RS15935 -1.6 -8.0 rRNA pseudouridine synthase compare
LRK54_RS13085 -1.5 -10.5 alpha-glucosidase family protein compare
LRK54_RS16050 -1.5 -1.0 tetratricopeptide repeat protein compare
LRK54_RS11700 -1.5 -3.1 cytochrome bd-I oxidase subunit CydX compare
LRK54_RS17205 -1.5 -2.7 heavy metal translocating P-type ATPase compare
LRK54_RS16015 -1.5 -10.2 formylglycine-generating enzyme family protein compare
LRK54_RS02710 -1.5 -1.6 pentapeptide MXKDX repeat protein compare
LRK54_RS01340 -1.5 -11.4 amidophosphoribosyltransferase compare
LRK54_RS09250 -1.5 -12.6 rhomboid family intramembrane serine protease compare
LRK54_RS07775 -1.5 -3.8 MarR family transcriptional regulator compare
LRK54_RS12830 -1.5 -5.4 YeiH family protein compare
LRK54_RS11450 -1.5 -7.6 transcriptional repressor AgaR compare


Specific Phenotypes

For 5 genes in this experiment

For stress ammonium iron(II) sulfate hexahydrate in Rhodanobacter denitrificans FW104-10B01

For stress ammonium iron(II) sulfate hexahydrate across organisms