Experiment set4IT003 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Ammonium chloride nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS23590 -5.7 -3.2 gluconokinase compare
PFLU_RS28695 -5.1 -4.9 phosphoglycerate dehydrogenase compare
PFLU_RS13795 -4.0 -2.7 hypothetical protein compare
PFLU_RS25815 -3.8 -2.5 transcription termination/antitermination protein NusA compare
PFLU_RS31440 -3.4 -2.2 hypothetical protein compare
PFLU_RS31425 -3.3 -1.6 hypothetical protein compare
PFLU_RS25920 -3.2 -4.3 outer membrane protein assembly factor BamE compare
PFLU_RS28895 -3.2 -2.5 DUF2388 domain-containing protein compare
PFLU_RS09055 -3.2 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS12975 -3.1 -6.5 DUF934 domain-containing protein compare
PFLU_RS29880 -3.0 -13.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS12980 -2.8 -10.9 nitrite/sulfite reductase compare
PFLU_RS23065 -2.8 -10.7 phosphate acyltransferase PlsX compare
PFLU_RS02490 -2.8 -11.5 phosphoserine phosphatase SerB compare
PFLU_RS28315 -2.8 -1.3 response regulator compare
PFLU_RS21495 -2.7 -4.0 TlpA family protein disulfide reductase compare
PFLU_RS04070 -2.7 -6.4 peptide chain release factor 3 compare
PFLU_RS24125 -2.6 -8.9 cold-shock protein compare
PFLU_RS03075 -2.6 -2.1 translation initiation factor Sui1 compare
PFLU_RS00695 -2.6 -1.3 DUF2789 domain-containing protein compare
PFLU_RS29885 -2.6 -10.2 LysR family transcriptional regulator compare
PFLU_RS22095 -2.6 -17.6 GTP diphosphokinase compare
PFLU_RS22740 -2.6 -7.2 phosphoadenylyl-sulfate reductase compare
PFLU_RS00535 -2.5 -2.8 DUF1127 domain-containing protein compare
PFLU_RS22105 -2.5 -6.8 cysteine synthase CysM compare
PFLU_RS27640 -2.5 -2.2 alpha/beta fold hydrolase compare
PFLU_RS22595 -2.5 -5.1 OmpA family protein compare
PFLU_RS18505 -2.5 -11.8 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS29875 -2.4 -13.1 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS29975 -2.4 -1.8 ATP-binding cassette domain-containing protein compare
PFLU_RS24090 -2.3 -3.8 Holliday junction branch migration protein RuvA compare
PFLU_RS25760 -2.3 -10.8 glucose-6-phosphate isomerase compare
PFLU_RS25735 -2.3 -8.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS23585 -2.2 -7.3 GntP family permease compare
PFLU_RS25755 -2.2 -4.6 pantoate--beta-alanine ligase compare
PFLU_RS03645 -2.2 -10.4 tetratricopeptide repeat protein compare
PFLU_RS00180 -2.2 -8.2 tryptophan synthase subunit beta compare
PFLU_RS24330 -2.1 -7.5 phosphogluconate dehydratase compare
PFLU_RS19165 -2.1 -6.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS20955 -2.1 -1.5 DUF1028 domain-containing protein compare
PFLU_RS29095 -2.1 -15.0 polyphosphate kinase 1 compare
PFLU_RS01960 -2.1 -1.4 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS23310 -2.1 -9.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS27635 -2.1 -7.4 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS17545 -2.1 -1.6 DUF465 domain-containing protein compare
PFLU_RS14775 -2.1 -1.6 enoyl-CoA hydratase compare
PFLU_RS07275 -2.0 -2.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS14450 -2.0 -2.3 AzlD domain-containing protein compare
PFLU_RS14335 -2.0 -1.8 ABC transporter permease compare
PFLU_RS10120 -2.0 -3.2 hypothetical protein compare
PFLU_RS17950 -2.0 -1.9 hypothetical protein compare
PFLU_RS00175 -2.0 -9.1 tryptophan synthase subunit alpha compare
PFLU_RS27650 -2.0 -10.3 biotin synthase BioB compare
PFLU_RS21360 -2.0 -1.8 MarR family transcriptional regulator compare
PFLU_RS06855 -2.0 -2.3 helix-turn-helix transcriptional regulator compare
PFLU_RS03765 -2.0 -7.8 sulfate adenylyltransferase subunit CysD compare
PFLU_RS04315 -1.9 -2.6 rod shape-determining protein MreD compare
PFLU_RS18530 -1.9 -5.2 DNA translocase FtsK compare
PFLU_RS06320 -1.9 -2.3 OmpH family outer membrane protein compare
PFLU_RS27645 -1.9 -9.5 8-amino-7-oxononanoate synthase compare
PFLU_RS29065 -1.9 -1.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS23725 -1.9 -10.3 glucose-6-phosphate dehydrogenase compare
PFLU_RS24485 -1.8 -7.4 hypothetical protein compare
PFLU_RS23305 -1.8 -8.6 arginine N-succinyltransferase compare
PFLU_RS05250 -1.8 -4.8 elongation factor 4 compare
PFLU_RS26565 -1.8 -1.9 rRNA maturation RNase YbeY compare
PFLU_RS13540 -1.8 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS09845 -1.8 -2.3 biotin carboxyl carrier domain-containing protein compare
PFLU_RS25585 -1.8 -1.2 exodeoxyribonuclease V subunit alpha compare
PFLU_RS26545 -1.8 -7.8 sel1 repeat family protein compare
PFLU_RS28965 -1.7 -6.5 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS03770 -1.7 -9.3 sulfate adenylyltransferase subunit CysN compare
PFLU_RS03970 -1.7 -5.8 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS30345 -1.7 -2.7 DUF2559 family protein compare
PFLU_RS13950 -1.7 -3.6 hypothetical protein compare
PFLU_RS29515 -1.7 -6.6 RidA family protein compare
PFLU_RS28645 -1.7 -9.0 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS28195 -1.7 -9.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS24095 -1.7 -3.0 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS24085 -1.7 -4.2 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS25715 -1.6 -8.1 RNA polymerase-binding protein DksA compare
PFLU_RS23810 -1.6 -3.1 hypothetical protein compare
PFLU_RS11505 -1.6 -2.5 ABC transporter substrate-binding protein compare
PFLU_RS00415 -1.6 -2.2 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS20515 -1.6 -4.5 amidophosphoribosyltransferase compare
PFLU_RS22010 -1.5 -5.8 threonine-phosphate decarboxylase compare
PFLU_RS06555 -1.5 -7.3 OmpA family protein compare
PFLU_RS01645 -1.5 -7.8 S41 family peptidase compare
PFLU_RS26595 -1.5 -2.2 lipoprotein compare
PFLU_RS18645 -1.5 -2.7 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS04150 -1.5 -4.2 DUF1043 family protein compare
PFLU_RS18055 -1.5 -1.6 hydrolase compare
PFLU_RS09500 -1.5 -1.5 hypothetical protein compare
PFLU_RS24335 -1.5 -8.0 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS18395 -1.5 -1.7 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS24025 -1.5 -7.2 quinolinate synthase NadA compare
PFLU_RS26735 -1.4 -5.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS00310 -1.4 -0.9 twin transmembrane helix small protein compare
PFLU_RS02180 -1.4 -1.0 thioredoxin TrxC compare
PFLU_RS09540 -1.4 -2.9 TIGR03745 family integrating conjugative element membrane protein compare
PFLU_RS06530 -1.4 -2.5 collagen-like triple helix repeat-containing protein compare
PFLU_RS22370 -1.4 -6.6 cadmium-translocating P-type ATPase compare
PFLU_RS29275 -1.4 -3.8 DUF484 family protein compare
PFLU_RS25190 -1.4 -2.0 hypothetical protein compare
PFLU_RS04325 -1.4 -9.1 ribonuclease G compare
PFLU_RS25750 -1.4 -3.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS17295 -1.4 -3.5 type VI secretion system contractile sheath small subunit compare
PFLU_RS08160 -1.3 -5.1 sugar transferase compare
PFLU_RS07785 -1.3 -7.5 VacJ family lipoprotein compare
PFLU_RS18670 -1.3 -1.9 NADH-quinone oxidoreductase subunit M compare
PFLU_RS29560 -1.3 -1.2 hypothetical protein compare
PFLU_RS28650 -1.3 -4.7 RNA pyrophosphohydrolase compare
PFLU_RS27620 -1.3 -8.8 acyl-CoA dehydrogenase compare
PFLU_RS28080 -1.3 -2.6 hypothetical protein compare
PFLU_RS23380 -1.3 -0.8 HAD-IB family hydrolase compare
PFLU_RS01005 -1.3 -1.0 ABC transporter ATP-binding protein compare
PFLU_RS19175 -1.3 -5.3 trigger factor compare
PFLU_RS13765 -1.2 -2.0 hypothetical protein compare
PFLU_RS09980 -1.2 -9.1 peptidase S41 compare
PFLU_RS06055 -1.2 -1.3 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS18665 -1.2 -3.0 NADH-quinone oxidoreductase subunit L compare
PFLU_RS24255 -1.2 -6.2 pyruvate kinase compare
PFLU_RS07525 -1.2 -1.1 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS04430 -1.2 -4.9 ATP-binding cassette domain-containing protein compare
PFLU_RS29900 -1.2 -6.4 DNA helicase II compare
PFLU_RS08485 -1.2 -1.7 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS21690 -1.2 -2.3 DNA-binding protein compare
PFLU_RS31710 -1.2 -1.7 hypothetical protein compare
PFLU_RS25730 -1.2 -7.8 PAS domain S-box protein compare
PFLU_RS14550 -1.2 -4.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS05780 -1.2 -5.9 helix-turn-helix transcriptional regulator compare
PFLU_RS24670 -1.2 -1.6 HigA family addiction module antidote protein compare
PFLU_RS13350 -1.1 -1.0 ParD-like family protein compare
PFLU_RS00465 -1.1 -6.2 spore maturation protein compare
PFLU_RS04715 -1.1 -2.9 D-alanine--D-alanine ligase compare
PFLU_RS00750 -1.1 -2.2 poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD compare
PFLU_RS02365 -1.1 -6.3 glycosyltransferase compare
PFLU_RS14300 -1.1 -1.2 response regulator transcription factor compare
PFLU_RS11840 -1.1 -1.5 RNA polymerase sigma factor compare
PFLU_RS00530 -1.1 -0.7 DUF2388 domain-containing protein compare
PFLU_RS15970 -1.1 -2.0 DUF861 domain-containing protein compare
PFLU_RS19170 -1.1 -2.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS21300 -1.1 -3.3 cysteine hydrolase compare
PFLU_RS28535 -1.1 -6.1 dihydroxy-acid dehydratase compare
PFLU_RS22070 -1.1 -2.8 phosphoribosylglycinamide formyltransferase compare
PFLU_RS01965 -1.1 -1.1 ATP-dependent protease subunit HslV compare
PFLU_RS07225 -1.1 -7.0 L-aspartate oxidase compare
PFLU_RS13750 -1.1 -1.0 hypothetical protein compare
PFLU_RS18640 -1.1 -3.1 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS07650 -1.1 -6.7 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS03145 -1.1 -2.6 peptidase A24 compare
PFLU_RS13020 -1.1 -2.2 cobalamin biosynthesis protein compare
PFLU_RS18635 -1.1 -2.2 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS30500 -1.1 -3.3 LapA family protein compare
PFLU_RS21985 -1.1 -2.7 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS26290 -1.1 -0.7 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS24560 -1.0 -4.4 site-specific tyrosine recombinase XerD compare
PFLU_RS10340 -1.0 -1.1 hypothetical protein compare
PFLU_RS30165 -1.0 -4.4 ParA family protein compare
PFLU_RS28310 -1.0 -1.2 response regulator compare
PFLU_RS12660 -1.0 -3.4 hypothetical protein compare
PFLU_RS01485 -1.0 -6.2 cellulase compare
PFLU_RS16580 -1.0 -2.1 hypothetical protein compare
PFLU_RS18655 -1.0 -1.9 NADH-quinone oxidoreductase subunit J compare
PFLU_RS14545 -1.0 -1.3 hypothetical protein compare
PFLU_RS11930 -1.0 -1.8 biopolymer transporter ExbD compare
PFLU_RS27465 -1.0 -2.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS02115 -1.0 -1.1 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS05020 -1.0 -1.0 DUF1120 domain-containing protein compare
PFLU_RS02875 -1.0 -3.1 urease subunit gamma compare
PFLU_RS23675 -1.0 -1.7 hypothetical protein compare
PFLU_RS26770 -1.0 -5.8 DedA family protein compare
PFLU_RS25640 -1.0 -5.2 ketol-acid reductoisomerase compare
PFLU_RS25645 -1.0 -1.2 acetolactate synthase small subunit compare
PFLU_RS08155 -1.0 -2.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS25225 -1.0 -4.4 disulfide bond formation protein B compare
PFLU_RS18705 -1.0 -2.1 hypothetical protein compare
PFLU_RS20960 -1.0 -1.9 hypothetical protein compare
PFLU_RS24785 -1.0 -4.8 outer membrane protein assembly factor BamB compare
PFLU_RS08165 -1.0 -1.1 acyl carrier protein compare
PFLU_RS08505 -1.0 -4.0 protease HtpX compare
PFLU_RS09945 -1.0 -1.8 catalase family protein compare
PFLU_RS18620 -1.0 -3.3 NADH-quinone oxidoreductase subunit B compare
PFLU_RS20040 -1.0 -2.2 GntR family transcriptional regulator compare
PFLU_RS28690 -1.0 -5.6 FAD-binding oxidoreductase compare
PFLU_RS18735 -1.0 -1.0 hypothetical protein compare
PFLU_RS30985 -1.0 -2.4 hypothetical protein compare
PFLU_RS02775 -1.0 -1.2 urease accessory protein UreF compare
PFLU_RS05885 -1.0 -3.6 recombinase RecA compare
PFLU_RS29090 -1.0 -4.6 exopolyphosphatase compare
PFLU_RS05050 -1.0 -1.1 response regulator transcription factor compare
PFLU_RS25800 -1.0 -4.2 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS01665 -0.9 -1.2 glutaredoxin 3 compare
PFLU_RS30770 -0.9 -2.0 thioredoxin family protein compare
PFLU_RS08275 -0.9 -3.5 hypothetical protein compare
PFLU_RS02860 -0.9 -1.1 urease subunit beta compare
PFLU_RS12800 -0.9 -1.2 amino acid ABC transporter ATP-binding protein compare
PFLU_RS27910 -0.9 -0.6 helix-turn-helix transcriptional regulator compare
PFLU_RS20520 -0.9 -4.1 colicin V production protein CvpA compare
PFLU_RS17525 -0.9 -1.8 NUDIX domain-containing protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in nitrogen source experiments

For nitrogen source D-Glucose across organisms