Experiment set4IT002 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Ammonium chloride nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS26565 -4.8 -2.3 rRNA maturation RNase YbeY compare
PFLU_RS21240 -4.2 -2.0 hypothetical protein compare
PFLU_RS28695 -4.2 -8.0 phosphoglycerate dehydrogenase compare
PFLU_RS29065 -4.1 -1.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS24980 -3.9 -2.4 purine-binding chemotaxis protein CheW compare
PFLU_RS13370 -3.6 -1.4 DUF2790 domain-containing protein compare
PFLU_RS22740 -3.4 -5.1 phosphoadenylyl-sulfate reductase compare
PFLU_RS12145 -3.2 -2.5 nuclear transport factor 2 family protein compare
PFLU_RS12975 -3.2 -6.0 DUF934 domain-containing protein compare
PFLU_RS24330 -3.1 -6.2 phosphogluconate dehydratase compare
PFLU_RS16785 -3.0 -2.7 GAF domain-containing protein compare
PFLU_RS12715 -2.9 -1.1 fumarylacetoacetate hydrolase family protein compare
PFLU_RS03970 -2.9 -8.2 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS19555 -2.9 -2.1 histidine phosphatase family protein compare
PFLU_RS19550 -2.8 -1.1 ABC transporter ATP-binding protein compare
PFLU_RS23065 -2.7 -11.1 phosphate acyltransferase PlsX compare
PFLU_RS29400 -2.7 -2.1 DUF1127 domain-containing protein compare
PFLU_RS22595 -2.7 -4.7 OmpA family protein compare
PFLU_RS01875 -2.6 -1.0 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS00180 -2.5 -7.9 tryptophan synthase subunit beta compare
PFLU_RS01910 -2.5 -2.4 sterol-binding protein compare
PFLU_RS21995 -2.5 -4.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS22105 -2.5 -6.1 cysteine synthase CysM compare
PFLU_RS11380 -2.5 -1.6 sarcosine oxidase subunit delta compare
PFLU_RS04530 -2.5 -2.2 hypothetical protein compare
PFLU_RS02860 -2.4 -2.2 urease subunit beta compare
PFLU_RS21495 -2.4 -3.2 TlpA family protein disulfide reductase compare
PFLU_RS06055 -2.4 -1.1 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS00415 -2.4 -1.6 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS25735 -2.3 -8.8 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS29875 -2.3 -10.9 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS24125 -2.2 -6.3 cold-shock protein compare
PFLU_RS03910 -2.2 -3.8 DUF3094 family protein compare
PFLU_RS25755 -2.2 -4.6 pantoate--beta-alanine ligase compare
PFLU_RS18530 -2.2 -4.7 DNA translocase FtsK compare
PFLU_RS12395 -2.2 -2.5 zinc ribbon domain-containing protein compare
PFLU_RS09845 -2.1 -2.6 biotin carboxyl carrier domain-containing protein compare
PFLU_RS14320 -2.1 -2.4 DUF2946 domain-containing protein compare
PFLU_RS22030 -2.1 -2.3 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS08575 -2.1 -2.2 hypothetical protein compare
PFLU_RS08600 -2.1 -2.4 glutaredoxin family protein compare
PFLU_RS23305 -2.1 -8.1 arginine N-succinyltransferase compare
PFLU_RS06855 -2.0 -1.7 helix-turn-helix transcriptional regulator compare
PFLU_RS21300 -2.0 -4.1 cysteine hydrolase compare
PFLU_RS08760 -2.0 -3.1 phosphonate C-P lyase system protein PhnG compare
PFLU_RS01285 -2.0 -1.3 HAMP domain-containing protein compare
PFLU_RS01005 -2.0 -1.5 ABC transporter ATP-binding protein compare
PFLU_RS27650 -2.0 -9.0 biotin synthase BioB compare
PFLU_RS03995 -2.0 -1.2 hypothetical protein compare
PFLU_RS07520 -2.0 -1.1 hypothetical protein compare
PFLU_RS28195 -1.9 -9.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS30160 -1.9 -3.4 ParB/RepB/Spo0J family partition protein compare
PFLU_RS23070 -1.9 -1.2 50S ribosomal protein L32 compare
PFLU_RS29880 -1.9 -8.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS01960 -1.9 -1.3 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS28895 -1.9 -1.3 DUF2388 domain-containing protein compare
PFLU_RS00190 -1.9 -2.6 DUF883 domain-containing protein compare
PFLU_RS03765 -1.9 -7.3 sulfate adenylyltransferase subunit CysD compare
PFLU_RS22095 -1.9 -11.8 GTP diphosphokinase compare
PFLU_RS27645 -1.9 -8.6 8-amino-7-oxononanoate synthase compare
PFLU_RS00175 -1.8 -7.2 tryptophan synthase subunit alpha compare
PFLU_RS13365 -1.8 -1.6 hypothetical protein compare
PFLU_RS26545 -1.8 -7.4 sel1 repeat family protein compare
PFLU_RS29885 -1.8 -5.8 LysR family transcriptional regulator compare
PFLU_RS15410 -1.8 -2.6 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS17060 -1.8 -1.7 monooxygenase compare
PFLU_RS13120 -1.8 -1.2 hypothetical protein compare
PFLU_RS08505 -1.8 -5.3 protease HtpX compare
PFLU_RS25225 -1.8 -6.0 disulfide bond formation protein B compare
PFLU_RS19170 -1.8 -3.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS24670 -1.8 -1.5 HigA family addiction module antidote protein compare
PFLU_RS13945 -1.8 -1.7 hypothetical protein compare
PFLU_RS13105 -1.7 -1.8 nuclear transport factor 2 family protein compare
PFLU_RS18615 -1.7 -2.7 NADH-quinone oxidoreductase subunit A compare
PFLU_RS22070 -1.7 -2.8 phosphoribosylglycinamide formyltransferase compare
PFLU_RS17950 -1.7 -1.9 hypothetical protein compare
PFLU_RS04070 -1.7 -3.8 peptide chain release factor 3 compare
PFLU_RS19050 -1.7 -2.4 spore coat protein U domain-containing protein compare
PFLU_RS23920 -1.7 -2.0 septation protein A compare
PFLU_RS04835 -1.7 -0.9 hypothetical protein compare
PFLU_RS27630 -1.7 -3.0 dethiobiotin synthase compare
PFLU_RS21985 -1.7 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS02490 -1.7 -7.3 phosphoserine phosphatase SerB compare
PFLU_RS06530 -1.7 -2.0 collagen-like triple helix repeat-containing protein compare
PFLU_RS00210 -1.7 -1.4 OsmC family protein compare
PFLU_RS12205 -1.6 -2.0 DNA binding protein compare
PFLU_RS28645 -1.6 -7.8 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS09055 -1.6 -5.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS18670 -1.6 -1.8 NADH-quinone oxidoreductase subunit M compare
PFLU_RS24485 -1.6 -6.6 hypothetical protein compare
PFLU_RS27910 -1.6 -1.2 helix-turn-helix transcriptional regulator compare
PFLU_RS23310 -1.6 -6.4 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS25730 -1.6 -9.6 PAS domain S-box protein compare
PFLU_RS03645 -1.6 -8.0 tetratricopeptide repeat protein compare
PFLU_RS19165 -1.6 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS02310 -1.6 -3.4 LPS kinase compare
PFLU_RS15310 -1.6 -2.1 YgdI/YgdR family lipoprotein compare
PFLU_RS17815 -1.6 -1.7 response regulator compare
PFLU_RS10430 -1.6 -2.2 peptidase compare
PFLU_RS07645 -1.5 -3.7 hypothetical protein compare
PFLU_RS29095 -1.5 -11.3 polyphosphate kinase 1 compare
PFLU_RS19175 -1.5 -5.6 trigger factor compare
PFLU_RS04430 -1.5 -5.7 ATP-binding cassette domain-containing protein compare
PFLU_RS21060 -1.5 -2.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS28650 -1.5 -3.9 RNA pyrophosphohydrolase compare
PFLU_RS25040 -1.5 -2.0 DUF3077 domain-containing protein compare
PFLU_RS25760 -1.5 -6.7 glucose-6-phosphate isomerase compare
PFLU_RS18635 -1.5 -2.8 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS31310 -1.5 -1.3 phage tail protein compare
PFLU_RS09535 -1.5 -1.0 TIGR03750 family conjugal transfer protein compare
PFLU_RS31630 -1.5 -1.9 hypothetical protein compare
PFLU_RS18505 -1.4 -6.2 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS24095 -1.4 -2.3 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS08860 -1.4 -2.3 2-hydroxy-3-oxopropionate reductase compare
PFLU_RS14810 -1.4 -1.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS30165 -1.4 -5.6 ParA family protein compare
PFLU_RS28965 -1.4 -5.6 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS09480 -1.4 -1.5 hypothetical protein compare
PFLU_RS08485 -1.4 -1.2 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS03770 -1.4 -6.3 sulfate adenylyltransferase subunit CysN compare
PFLU_RS24865 -1.4 -3.4 serine O-acetyltransferase compare
PFLU_RS20690 -1.4 -3.0 hypothetical protein compare
PFLU_RS31290 -1.4 -1.4 EamA family transporter compare
PFLU_RS22365 -1.4 -4.4 membrane protein compare
PFLU_RS18665 -1.4 -3.3 NADH-quinone oxidoreductase subunit L compare
PFLU_RS18655 -1.4 -2.1 NADH-quinone oxidoreductase subunit J compare
PFLU_RS04440 -1.4 -6.5 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS05250 -1.4 -3.7 elongation factor 4 compare
PFLU_RS14550 -1.4 -3.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS25920 -1.4 -1.8 outer membrane protein assembly factor BamE compare
PFLU_RS24335 -1.4 -6.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS24790 -1.4 -3.4 tetratricopeptide repeat protein compare
PFLU_RS07540 -1.4 -1.2 class II glutamine amidotransferase compare
PFLU_RS00195 -1.4 -1.0 dodecin domain-containing protein compare
PFLU_RS23590 -1.3 -0.8 gluconokinase compare
PFLU_RS21900 -1.3 -2.4 hypothetical protein compare
PFLU_RS12980 -1.3 -5.3 nitrite/sulfite reductase compare
PFLU_RS25750 -1.3 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS09730 -1.3 -2.0 TIGR03761 family integrating conjugative element protein compare
PFLU_RS23585 -1.3 -4.3 GntP family permease compare
PFLU_RS25715 -1.3 -6.2 RNA polymerase-binding protein DksA compare
PFLU_RS11510 -1.3 -2.7 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
PFLU_RS02975 -1.3 -4.3 precorrin-3B synthase compare
PFLU_RS29490 -1.3 -4.5 ribonuclease PH compare
PFLU_RS24785 -1.3 -5.3 outer membrane protein assembly factor BamB compare
PFLU_RS05780 -1.3 -6.1 helix-turn-helix transcriptional regulator compare
PFLU_RS13010 -1.3 -3.4 Fe-S biogenesis protein NfuA compare
PFLU_RS05885 -1.3 -4.3 recombinase RecA compare
PFLU_RS06165 -1.3 -1.4 hypothetical protein compare
PFLU_RS18620 -1.3 -4.0 NADH-quinone oxidoreductase subunit B compare
PFLU_RS29515 -1.3 -4.8 RidA family protein compare
PFLU_RS06555 -1.3 -5.4 OmpA family protein compare
PFLU_RS27635 -1.3 -4.0 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS20515 -1.3 -4.1 amidophosphoribosyltransferase compare
PFLU_RS06955 -1.3 -3.2 helix-turn-helix domain-containing protein compare
PFLU_RS27785 -1.3 -3.0 DUF2780 domain-containing protein compare
PFLU_RS26455 -1.3 -2.7 3'-5' exonuclease compare
PFLU_RS15200 -1.3 -1.5 ABC transporter substrate-binding protein compare
PFLU_RS22380 -1.3 -3.3 sulfite exporter TauE/SafE family protein compare
PFLU_RS31185 -1.2 -3.2 hypothetical protein compare
PFLU_RS23725 -1.2 -6.5 glucose-6-phosphate dehydrogenase compare
PFLU_RS10500 -1.2 -3.6 DUF480 domain-containing protein compare
PFLU_RS04935 -1.2 -2.4 cyclic pyranopterin monophosphate synthase MoaC compare
PFLU_RS11720 -1.2 -3.2 hypothetical protein compare
PFLU_RS07275 -1.2 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS15800 -1.2 -2.4 immunity 49 family protein compare
PFLU_RS21640 -1.2 -3.4 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS19665 -1.2 -1.0 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS29900 -1.2 -6.2 DNA helicase II compare
PFLU_RS04195 -1.2 -2.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS27365 -1.2 -4.3 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS21265 -1.2 -3.9 helix-turn-helix transcriptional regulator compare
PFLU_RS28725 -1.2 -5.7 DUF2059 domain-containing protein compare
PFLU_RS20520 -1.2 -4.7 colicin V production protein CvpA compare
PFLU_RS26905 -1.2 -4.9 transcriptional regulator NrdR compare
PFLU_RS15955 -1.2 -2.6 4-hydroxy-2-oxoheptanedioate aldolase compare
PFLU_RS18640 -1.2 -3.1 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS18725 -1.2 -1.2 alpha/beta hydrolase compare
PFLU_RS17080 -1.2 -1.8 FadR family transcriptional regulator compare
PFLU_RS29975 -1.2 -1.2 ATP-binding cassette domain-containing protein compare
PFLU_RS08410 -1.2 -3.6 HTH-type transcriptional regulator CysB compare
PFLU_RS05690 -1.2 -0.8 Grx4 family monothiol glutaredoxin compare
PFLU_RS00465 -1.2 -5.5 spore maturation protein compare
PFLU_RS16515 -1.2 -2.1 hypothetical protein compare
PFLU_RS17150 -1.2 -2.2 hypothetical protein compare
PFLU_RS26800 -1.2 -2.0 hypothetical protein compare
PFLU_RS23265 -1.2 -2.7 aspartate kinase compare
PFLU_RS28985 -1.1 -2.9 ABC transporter permease compare
PFLU_RS09980 -1.1 -7.4 peptidase S41 compare
PFLU_RS10235 -1.1 -2.9 glycosyltransferase compare
PFLU_RS04315 -1.1 -1.5 rod shape-determining protein MreD compare
PFLU_RS04325 -1.1 -6.9 ribonuclease G compare
PFLU_RS07225 -1.1 -6.2 L-aspartate oxidase compare
PFLU_RS12945 -1.1 -2.6 hypothetical protein compare
PFLU_RS21110 -1.1 -1.8 AAA family ATPase compare
PFLU_RS07495 -1.1 -1.6 DUF2892 domain-containing protein compare
PFLU_RS04840 -1.1 -2.3 SDR family oxidoreductase compare
PFLU_RS26770 -1.1 -6.2 DedA family protein compare
PFLU_RS24255 -1.1 -5.1 pyruvate kinase compare
PFLU_RS01965 -1.1 -1.2 ATP-dependent protease subunit HslV compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in nitrogen source experiments

For nitrogen source D-Glucose across organisms