Experiment set4IT001 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with Sodium nitrite 10 mM

200 most important genes:

  gene name fitness t score description  
AO356_24845 -4.6 -3.2 ATPase compare
AO356_09540 -4.3 -3.0 twin-arginine protein translocation system subunit TatC compare
AO356_01115 -4.3 -2.4 hypothetical protein compare
AO356_02250 -4.1 -4.0 pyridine nucleotide-disulfide oxidoreductase compare
AO356_18025 -4.0 -2.8 ATP-dependent DNA helicase RuvB compare
AO356_15165 -4.0 -2.8 protein cII compare
AO356_08905 -3.9 -2.7 glycosyl transferase compare
AO356_18020 -3.9 -2.7 ATP-dependent DNA helicase RuvA compare
AO356_22795 -3.7 -2.5 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_03305 -3.6 -2.5 ATPase compare
AO356_06715 -3.5 -3.3 hypothetical protein compare
AO356_19835 -3.5 -2.4 histidine kinase compare
AO356_25715 -3.4 -2.7 branched-chain amino acid ABC transporter substrate-binding protein compare
AO356_09815 -3.3 -5.1 imidazoleglycerol-phosphate dehydratase compare
AO356_12640 -3.3 -3.2 cytochrome C compare
AO356_02460 -3.3 -2.5 hypothetical protein compare
AO356_02465 -3.3 -2.3 carbonate dehydratase compare
AO356_12515 -3.2 -3.1 exodeoxyribonuclease III compare
AO356_05670 -3.2 -2.2 recombinase RecA compare
AO356_20830 -3.1 -3.7 phosphoadenosine phosphosulfate reductase compare
AO356_06965 -3.1 -6.8 histidinol dehydrogenase compare
AO356_03405 -3.0 -3.5 serine acetyltransferase compare
AO356_18805 -3.0 -2.0 magnesium transporter compare
AO356_16075 -3.0 -2.9 Fis family transcriptional regulator compare
AO356_09795 -2.9 -2.0 imidazole glycerol phosphate synthase subunit HisF compare
AO356_03500 -2.9 -3.9 3-oxoacyl-ACP reductase compare
AO356_09810 -2.9 -3.9 imidazole glycerol phosphate synthase subunit HisH compare
AO356_17075 -2.8 -2.7 cytochrome C compare
AO356_08585 -2.8 -3.3 50S ribosomal protein L9 compare
AO356_09800 -2.8 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_08890 -2.7 -8.2 glycosyltransferase compare
AO356_28205 -2.7 -6.3 hemolysin secretion protein D compare
AO356_11315 -2.7 -1.8 shikimate dehydrogenase compare
AO356_10185 -2.7 -6.2 glutamate--cysteine ligase compare
AO356_20915 -2.7 -3.1 thiamine pyrophosphate-binding protein compare
AO356_01625 -2.6 -3.1 RNA polymerase subunit sigma-24 compare
AO356_13485 -2.6 -2.7 chemotaxis protein CheY compare
AO356_15325 -2.6 -3.0 hypothetical protein compare
AO356_11450 -2.4 -2.4 cytochrome C compare
AO356_06385 -2.4 -2.9 recombinase XerD compare
AO356_07005 -2.4 -2.3 ABC transporter ATP-binding protein compare
AO356_23595 -2.4 -2.3 short-chain dehydrogenase compare
AO356_03360 -2.4 -2.8 hypothetical protein compare
AO356_13605 -2.4 -7.6 5,10-methylenetetrahydrofolate reductase compare
AO356_29710 -2.3 -3.2 xylose isomerase compare
AO356_16980 -2.3 -9.4 protoheme IX farnesyltransferase compare
AO356_02210 -2.3 -2.7 copper-binding protein compare
AO356_08635 -2.3 -5.8 ATP phosphoribosyltransferase regulatory subunit compare
AO356_08235 -2.3 -6.8 histidine kinase compare
AO356_04570 -2.2 -4.2 RNA polymerase subunit sigma compare
AO356_01570 -2.2 -5.1 hydroxymethylglutaryl-CoA lyase compare
AO356_16965 -2.2 -14.0 cytochrome o ubiquinol oxidase subunit I compare
AO356_01740 -2.2 -2.6 DNA-binding protein compare
AO356_18755 -2.2 -6.3 succinylglutamate desuccinylase compare
AO356_16970 -2.2 -7.4 cytochrome o ubiquinol oxidase subunit III compare
AO356_09520 -2.1 -4.1 phosphoribosyl-AMP cyclohydrolase compare
AO356_07915 -2.1 -2.5 exodeoxyribonuclease V subunit beta compare
AO356_05540 -2.1 -2.0 cold-shock protein compare
AO356_04560 -2.1 -2.9 serine peptidase compare
AO356_24550 -2.1 -1.8 hypothetical protein compare
AO356_03345 -2.1 -7.0 hypothetical protein compare
AO356_03800 -2.1 -1.9 histidine kinase compare
AO356_15160 -2.1 -1.4 hypothetical protein compare
AO356_08660 -2.1 -6.3 tRNA dimethylallyltransferase compare
AO356_20175 -2.1 -2.0 3-oxoacyl-ACP synthase compare
AO356_16270 -2.0 -6.8 carbonate dehydratase compare
AO356_12725 -2.0 -4.1 recombinase XerC compare
AO356_08880 -2.0 -4.6 glycosyl transferase compare
AO356_18740 -2.0 -3.0 succinylglutamate-semialdehyde dehydrogenase compare
AO356_14505 -2.0 -2.3 peptidase M23 compare
AO356_20920 -2.0 -4.0 peptidase compare
AO356_17020 -2.0 -4.0 cytochrome D ubiquinol oxidase subunit III compare
AO356_01750 -2.0 -3.2 ATP-dependent Clp protease proteolytic subunit compare
AO356_10445 -1.9 -2.2 serine protease compare
AO356_08610 -1.9 -5.8 exoribonuclease R compare
AO356_02430 -1.9 -4.3 cytochrome C oxidase Cbb3 compare
AO356_16060 -1.9 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_19730 -1.9 -1.4 hypothetical protein compare
AO356_28200 -1.9 -6.8 macrolide transporter compare
AO356_03365 -1.9 -2.6 UDP-N-acetylglucosamine 2-epimerase compare
AO356_27640 -1.9 -2.9 chemotaxis protein CheB compare
AO356_10880 -1.8 -1.4 hypothetical protein compare
AO356_07210 -1.8 -2.7 histidine kinase compare
AO356_17035 -1.8 -4.3 ATPase compare
AO356_14790 -1.8 -6.3 MFS transporter compare
AO356_17485 -1.8 -3.9 elongation factor 4 compare
AO356_21125 -1.8 -3.5 cyclic peptide transporter compare
AO356_00990 -1.7 -2.4 penicillin-binding protein activator LpoB compare
AO356_17950 -1.7 -5.5 histidine kinase compare
AO356_16975 -1.7 -5.4 cytochrome C oxidase compare
AO356_06690 -1.7 -2.8 queuine tRNA-ribosyltransferase compare
AO356_02205 -1.7 -2.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_17985 -1.7 -4.2 cold-shock protein compare
AO356_11610 -1.7 -2.0 glycerol acyltransferase compare
AO356_06990 -1.7 -4.0 toluene tolerance protein compare
AO356_01275 -1.7 -4.4 GntR family transcriptional regulator compare
AO356_20475 -1.7 -2.0 hypothetical protein compare
AO356_19425 -1.7 -1.5 lipid A biosynthesis lauroyl acyltransferase compare
AO356_03780 -1.7 -1.6 flagellar motor switch protein compare
AO356_02425 -1.7 -6.3 cytochrome C oxidase Cbb3 compare
AO356_16600 -1.7 -1.9 malate:quinone oxidoreductase compare
AO356_06575 -1.6 -2.2 outer membrane protein assembly factor BamB compare
AO356_16960 -1.6 -7.9 ubiquinol oxidase subunit II compare
AO356_16070 -1.6 -4.1 poly(A) polymerase compare
AO356_08930 -1.6 -2.2 heptose kinase compare
AO356_02455 -1.6 -7.2 (Fe-S)-binding protein compare
AO356_07110 -1.6 -3.7 ribonuclease G compare
AO356_17065 -1.6 -1.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_27395 -1.6 -2.6 chemotaxis protein CheY compare
AO356_13275 -1.6 -1.9 multidrug transporter compare
AO356_12380 -1.6 -5.3 ATP-dependent DNA helicase RecG compare
AO356_17070 -1.6 -2.6 cytochrome B compare
AO356_01745 -1.6 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_06995 -1.6 -4.0 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_08875 -1.6 -1.8 toluene tolerance protein compare
AO356_05790 -1.6 -1.9 hypothetical protein compare
AO356_30375 -1.6 -2.0 hypothetical protein compare
AO356_11420 -1.6 -5.9 histidine kinase compare
AO356_19420 -1.5 -2.1 septum formation inhibitor compare
AO356_17515 -1.5 -7.2 murein transglycosylase compare
AO356_14295 -1.5 -1.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_30000 -1.5 -2.1 hypothetical protein compare
AO356_14870 -1.5 -4.0 dTDP-4-dehydrorhamnose reductase compare
AO356_27180 -1.5 -3.2 hypothetical protein compare
AO356_02800 -1.5 -2.5 transporter compare
AO356_03400 -1.5 -3.9 aminotransferase DegT compare
AO356_10000 -1.5 -3.4 hypothetical protein compare
AO356_02315 -1.5 -2.6 DNA topoisomerase I compare
AO356_22125 -1.5 -4.7 isocitrate dehydrogenase compare
AO356_16635 -1.5 -3.1 hypothetical protein compare
AO356_02875 -1.5 -4.1 peroxiredoxin compare
AO356_14160 -1.5 -2.7 pyrroloquinoline quinone biosynthesis protein PqqE compare
AO356_20880 -1.4 -1.8 3-methylitaconate isomerase compare
AO356_13425 -1.4 -1.8 hypothetical protein compare
AO356_03420 -1.4 -5.1 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_25095 -1.4 -2.9 cytochrome C compare
AO356_16505 -1.4 -2.1 molybdopterin-synthase adenylyltransferase compare
AO356_18155 -1.4 -1.3 cold-shock protein compare
AO356_21170 -1.4 -3.5 hemolysin secretion protein D compare
AO356_29125 -1.4 -1.5 vanillate monooxygenase compare
AO356_26895 -1.3 -2.2 2Fe-2S ferredoxin compare
AO356_08870 -1.3 -4.5 polymerase compare
AO356_11680 -1.3 -1.3 chromosome partitioning protein ParB compare
AO356_08895 -1.3 -1.6 GlcNAc-PI de-N-acetylase compare
AO356_03415 -1.3 -5.1 oxidoreductase compare
AO356_01755 -1.3 -2.3 trigger factor compare
AO356_27965 -1.3 -1.7 benzaldehyde dehydrogenase compare
AO356_01410 -1.3 -1.6 hypothetical protein compare
AO356_27830 -1.3 -2.1 hypothetical protein compare
AO356_28990 -1.3 -2.9 SfnB family sulfur acquisition oxidoreductase compare
AO356_08645 -1.3 -3.2 hypothetical protein compare
AO356_28000 -1.3 -1.6 Rrf2 family transcriptional regulator compare
AO356_16955 -1.3 -4.0 disulfide bond formation protein B compare
AO356_12990 -1.3 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
AO356_07480 -1.3 -2.1 carbamoyl phosphate synthase large subunit compare
AO356_20520 -1.3 -1.3 oxidoreductase compare
AO356_12385 -1.2 -5.2 LysR family transcriptional regulator compare
AO356_19810 -1.2 -2.2 esterase compare
AO356_00810 -1.2 -1.6 hypothetical protein compare
AO356_28125 -1.2 -1.3 hypothetical protein compare
AO356_12005 -1.2 -6.4 transcriptional regulator compare
AO356_25120 -1.2 -1.6 hypothetical protein compare
AO356_26195 -1.2 -2.6 TetR family transcriptional regulator compare
AO356_14820 -1.2 -1.7 Isochorismatase compare
AO356_26090 -1.2 -2.3 Vanillate O-demethylase oxidoreductase compare
AO356_28910 -1.2 -1.3 LysR family transcriptional regulator compare
AO356_09095 -1.2 -2.0 hypothetical protein compare
AO356_01965 -1.2 -2.6 terminase compare
AO356_06960 -1.2 -3.3 histidinol-phosphate aminotransferase compare
AO356_26755 -1.2 -2.1 DNA-directed RNA polymerase subunit alpha compare
AO356_12925 -1.2 -1.3 GntR family transcriptional regulator compare
AO356_05900 -1.2 -3.3 stationary phase survival protein SurE compare
AO356_05735 -1.2 -1.1 hypothetical protein compare
AO356_22095 -1.2 -3.4 cupin compare
AO356_26070 -1.2 -3.7 peptide ABC transporter substrate-binding protein compare
AO356_11270 -1.2 -4.4 potassium transporter peripheral membrane component compare
AO356_08670 -1.2 -1.5 N-acetylmuramoyl-L-alanine amidase compare
AO356_03350 -1.2 -3.6 glycosyl transferase compare
AO356_02290 -1.2 -1.9 TetR family transcriptional regulator compare
AO356_11025 -1.2 -3.3 transcriptional regulator PhoU compare
AO356_09525 -1.2 -3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_28505 -1.2 -2.3 sugar ABC transporter substrate-binding protein compare
AO356_07920 -1.2 -3.4 exodeoxyribonuclease V subunit gamma compare
AO356_03495 -1.2 -1.6 phosphoglycolate phosphatase compare
AO356_15860 -1.2 -1.1 general secretion pathway protein GspH compare
AO356_15920 -1.1 -2.2 DNA transporter compare
AO356_12945 -1.1 -2.4 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO356_10005 -1.1 -5.0 branched-chain amino acid permease (azaleucine resistance) compare
AO356_19285 -1.1 -1.0 tRNA-Asp compare
AO356_03620 -1.1 -2.3 cytochrome C compare
AO356_22735 -1.1 -3.5 molybdenum ABC transporter permease compare
AO356_10340 -1.1 -6.0 phosphoserine phosphatase compare
AO356_00710 -1.1 -2.2 transcriptional regulator compare
AO356_25995 -1.1 -2.0 acetylglucosaminylphosphatidylinositol deacetylase compare
AO356_17220 -1.1 -1.8 hypothetical protein compare
AO356_16050 -1.1 -1.9 glucose-6-phosphate isomerase compare
AO356_03095 -1.1 -3.2 protease HtpX compare
AO356_07495 -1.1 -1.9 molecular chaperone DnaJ compare
AO356_11055 -1.1 -2.0 long-chain acyl-CoA thioester hydrolase compare
AO356_02485 -1.1 -2.2 transcriptional regulator compare


Specific Phenotypes

For 7 genes in this experiment

For stress Sodium nitrite in Pseudomonas fluorescens FW300-N2C3

For stress Sodium nitrite across organisms