Experiment set4H9 for Shewanella amazonensis SB2B

Compare to:

LB with Zinc sulfate heptahydrate 0.3125 mM

Group: stress
Media: LB + Zinc sulfate heptahydrate (0.3125 mM)
Culturing: SB2B_ML5, 48 well microplate; Tecan Infinite F200, Aerobic, at 37 (C), shaken=orbital
By: Adam on 7/26/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 588 F5,F6

Specific Phenotypes

For 16 genes in this experiment

For stress Zinc sulfate heptahydrate in Shewanella amazonensis SB2B

For stress Zinc sulfate heptahydrate across organisms

SEED Subsystems

Subsystem #Specific
Orphan regulatory proteins 2
Biogenesis of cytochrome c oxidases 1
Cobalt-zinc-cadmium resistance 1
Iron acquisition in Vibrio 1
Proteasome bacterial 1
Proteolysis in bacteria, ATP-dependent 1
Transport of Iron 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
icosapentaenoate biosynthesis IV (bacteria) 1 1 1
gondoate biosynthesis (anaerobic) 4 4 1
NADPH to cytochrome c oxidase via plastocyanin (thylakoid membrane) 4 1 1
photosynthesis light reactions 4 1 1
palmitate biosynthesis II (type II fatty acid synthase) 31 29 7
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) 9 9 2
oleate biosynthesis IV (anaerobic) 14 13 3
superpathway of fatty acids biosynthesis (E. coli) 53 50 11
superpathway of unsaturated fatty acids biosynthesis (E. coli) 20 20 4
cis-vaccenate biosynthesis 5 5 1
8-amino-7-oxononanoate biosynthesis IV 5 4 1
fatty acid elongation -- saturated 5 4 1
superpathway of fatty acid biosynthesis II (plant) 43 37 8
8-amino-7-oxononanoate biosynthesis I 11 10 2
even iso-branched-chain fatty acid biosynthesis 34 24 6
odd iso-branched-chain fatty acid biosynthesis 34 24 6
anteiso-branched-chain fatty acid biosynthesis 34 24 6
(5Z)-dodecenoate biosynthesis I 6 6 1
stearate biosynthesis II (bacteria and plants) 6 5 1
(5Z)-dodecenoate biosynthesis II 6 5 1
superpathway of photosynthetic hydrogen production 6 1 1
streptorubin B biosynthesis 34 20 5
biotin biosynthesis I 15 14 2
superpathway of fatty acid biosynthesis I (E. coli) 16 13 2
oxygenic photosynthesis 17 12 1
ethene biosynthesis V (engineered) 25 19 1
photosynthetic 3-hydroxybutanoate biosynthesis (engineered) 26 21 1
1-butanol autotrophic biosynthesis (engineered) 27 20 1
mycolate biosynthesis 205 20 4
superpathway of mycolate biosynthesis 239 21 4