Experiment set4H6 for Pseudomonas stutzeri RCH2

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Psest_1492 -5.0 -8.4 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0062 -4.0 -12.4 tryptophan synthase, alpha subunit compare
Psest_0063 -3.8 -8.8 tryptophan synthase, beta subunit compare
Psest_1496 -3.5 -4.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_4219 -3.3 -3.2 DNA polymerase I compare
Psest_3129 -3.3 -2.4 tyrosine recombinase XerD compare
Psest_0958 -2.8 -11.7 Oligoketide cyclase/lipid transport protein compare
Psest_0309 -2.7 -2.7 RND family efflux transporter, MFP subunit compare
Psest_2872 -2.7 -3.1 protein RecA compare
Psest_2944 -2.5 -7.9 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_4191 -2.4 -2.8 Transcriptional regulator compare
Psest_3647 -2.2 -7.6 Indole-3-glycerol phosphate synthase compare
Psest_3092 -2.1 -3.0 ribonuclease III, bacterial compare
Psest_2584 -2.1 -6.7 Phosphoribosylanthranilate isomerase compare
Psest_1031 -2.1 -10.0 Uncharacterized protein conserved in bacteria compare
Psest_3998 -2.0 -6.3 glutamate--cysteine ligase compare
Psest_4078 -1.8 -4.0 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3648 -1.8 -8.2 anthranilate phosphoribosyltransferase compare
Psest_4274 -1.8 -4.1 hypothetical protein compare
Psest_1947 -1.7 -4.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_4335 -1.6 -4.2 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_0498 -1.6 -3.0 ribosome small subunit-dependent GTPase A compare
Psest_3123 -1.6 -5.1 dihydroorotase, homodimeric type compare
Psest_0280 -1.6 -11.6 homoserine O-acetyltransferase compare
Psest_0313 -1.6 -5.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0417 -1.5 -4.1 Acyl-CoA dehydrogenases compare
Psest_3338 -1.4 -2.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2945 -1.4 -2.8 septum site-determining protein MinC compare
Psest_1661 -1.4 -3.2 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3649 -1.4 -7.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0260 -1.4 -2.7 Cell division protein compare
Psest_3767 -1.4 -4.7 tyrosine recombinase XerC compare
Psest_3650 -1.4 -9.0 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2232 -1.3 -8.5 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3810 -1.3 -3.1 orotate phosphoribosyltransferase compare
Psest_2229 -1.3 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_0969 -1.3 -3.0 transcription elongation factor GreA compare
Psest_2153 -1.3 -3.3 formate dehydrogenase, gamma subunit compare
Psest_1704 -1.3 -2.3 Dehydrogenases (flavoproteins) compare
Psest_0998 -1.3 -3.8 poly(A) polymerase compare
Psest_4142 -1.3 -1.4 hypothetical protein compare
Psest_2104 -1.2 -2.7 IscR-regulated protein YhgI compare
Psest_2714 -1.2 -2.4 7-cyano-7-deazaguanine reductase compare
Psest_1659 -1.2 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1660 -1.2 -2.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1452 -1.1 -7.2 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_1657 -1.1 -2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2862 -1.1 -6.4 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3518 -1.1 -1.3 Transcriptional regulators compare
Psest_0279 -1.1 -5.4 methionine biosynthesis protein MetW compare
Psest_1498 -1.1 -3.4 tol-pal system-associated acyl-CoA thioesterase compare
Psest_2578 -1.1 -7.6 O-succinylhomoserine sulfhydrylase compare
Psest_3039 -1.1 -1.4 periplasmic nitrate reductase, NapE protein compare
Psest_1012 -1.1 -4.1 Signal transduction histidine kinase compare
Psest_2744 -1.1 -2.6 Uncharacterized conserved protein compare
Psest_3031 -1.1 -1.3 hypothetical protein compare
Psest_1951 -1.1 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_3790 -1.1 -5.7 Cytochrome c5 compare
Psest_4098 -1.0 -2.8 Superfamily I DNA and RNA helicases compare
Psest_0028 -1.0 -3.4 Coproporphyrinogen III oxidase compare
Psest_1814 -1.0 -6.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3700 -1.0 -0.8 hypothetical protein compare
Psest_0359 -1.0 -2.3 Transcriptional regulators compare
Psest_1292 -0.9 -5.8 monothiol glutaredoxin, Grx4 family compare
Psest_0678 -0.9 -2.7 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_0515 -0.9 -3.3 rare lipoprotein A compare
Psest_3047 -0.9 -1.8 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_2775 -0.9 -2.8 Glycerol-3-phosphate dehydrogenase compare
Psest_1284 -0.9 -3.5 exodeoxyribonuclease VII, large subunit compare
Psest_0691 -0.9 -6.5 ribonuclease R compare
Psest_0592 -0.9 -2.8 hypothetical protein compare
Psest_2863 -0.9 -4.4 Transcriptional regulator compare
Psest_2333 -0.9 -1.3 Protein of unknown function (DUF3359). compare
Psest_2066 -0.8 -2.4 ABC-type uncharacterized transport system, permease component compare
Psest_0466 -0.8 -3.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_4134 -0.8 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2532 -0.8 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_4082 -0.8 -2.6 hypothetical protein compare
Psest_2766 -0.8 -1.3 hypothetical protein compare
Psest_1655 -0.8 -3.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3766 -0.8 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_0759 -0.8 -1.0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_2946 -0.8 -3.5 septum site-determining protein MinD compare
Psest_1643 -0.8 -1.4 hypothetical protein compare
Psest_1161 -0.8 -2.2 E3 Ubiquitin ligase. compare
Psest_1143 -0.8 -4.3 Small-conductance mechanosensitive channel compare
Psest_2585 -0.8 -0.8 pseudouridylate synthase I compare
Psest_4049 -0.8 -1.8 hypothetical protein compare
Psest_0575 -0.8 -0.9 HrpA-like helicases compare
Psest_1774 -0.8 -1.7 Glutathione peroxidase compare
Psest_0722 -0.7 -4.6 Predicted ATPase compare
Psest_3890 -0.7 -0.9 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2150 -0.7 -1.7 DNA polymerase LigD, polymerase domain compare
Psest_0609 -0.7 -2.1 hypothetical protein compare
Psest_2756 -0.7 -1.2 hypothetical protein compare
Psest_1295 -0.7 -4.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2470 -0.7 -2.7 hypothetical protein compare
Psest_1663 -0.7 -2.1 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3784 -0.7 -1.3 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1540 -0.7 -1.4 biotin-dependent carboxylase uncharacterized domain compare
Psest_3237 -0.7 -2.0 hypothetical protein compare
Psest_3231 -0.7 -2.2 hypothetical protein compare
Psest_0867 -0.7 -1.1 hypothetical protein compare
Psest_2646 -0.7 -1.3 SOS regulatory protein LexA compare
Psest_2651 -0.7 -2.3 DNA topoisomerase I, bacterial compare
Psest_1651 -0.7 -2.6 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_4363 -0.7 -4.1 ATPases involved in chromosome partitioning compare
Psest_2531 -0.7 -5.6 cytochrome c oxidase accessory protein FixG compare
Psest_3502 -0.7 -1.3 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_3270 -0.7 -1.9 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0004 -0.7 -4.8 recF protein compare
Psest_1921 -0.7 -2.4 Protein of unknown function (DUF2797). compare
Psest_3697 -0.7 -0.8 Outer membrane lipoprotein carrier protein LolA. compare
Psest_3943 -0.6 -1.8 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3507 -0.6 -2.1 FOG: EAL domain compare
Psest_0225 -0.6 -0.9 Predicted permease, DMT superfamily compare
Psest_0489 -0.6 -2.1 phosphoserine phosphatase SerB compare
Psest_3305 -0.6 -3.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2590 -0.6 -1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_0843 -0.6 -4.6 hypothetical protein compare
Psest_2037 -0.6 -3.5 uroporphyrin-III C-methyltransferase compare
Psest_0719 -0.6 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_3303 -0.6 -3.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0311 -0.6 -2.4 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_4088 -0.6 -2.1 Transcriptional regulators compare
Psest_1227 -0.6 -1.7 Predicted SAM-dependent methyltransferase compare
Psest_2896 -0.6 -2.5 hypothetical protein compare
Psest_2810 -0.6 -3.1 5'/3'-nucleotidase SurE compare
Psest_1656 -0.6 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0312 -0.6 -2.7 Superfamily II DNA and RNA helicases compare
Psest_0257 -0.6 -1.1 Predicted Zn-dependent peptidases compare
Psest_1315 -0.6 -1.1 hypothetical protein compare
Psest_1679 -0.6 -1.2 ribonuclease, Rne/Rng family compare
Psest_4209 -0.6 -1.7 Uncharacterized conserved small protein compare
Psest_1975 -0.6 -3.4 Predicted transcriptional regulators compare
Psest_1974 -0.6 -2.6 integration host factor, alpha subunit compare
Psest_0516 -0.6 -3.9 D-alanyl-D-alanine carboxypeptidase compare
Psest_3678 -0.6 -2.1 acyl-phosphate glycerol 3-phosphate acyltransferase compare
Psest_1919 -0.6 -1.4 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_1918 -0.6 -2.8 Calcineurin-like phosphoesterase. compare
Psest_3927 -0.6 -2.6 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2123 -0.6 -1.0 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_0031 -0.6 -0.7 Uncharacterized conserved protein compare
Psest_1419 -0.6 -2.4 Transcriptional regulator compare
Psest_2023 -0.6 -2.6 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_2088 -0.5 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_2643 -0.5 -1.6 Beta-glucosidase-related glycosidases compare
Psest_1463 -0.5 -1.0 SufE protein probably involved in Fe-S center assembly compare
Psest_2885 -0.5 -1.0 Acyl carrier protein compare
Psest_0537 -0.5 -0.9 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_2329 -0.5 -4.4 Transcriptional regulator compare
Psest_1804 -0.5 -1.8 Superfamily II DNA and RNA helicases compare
Psest_4252 -0.5 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0542 -0.5 -2.7 AMP nucleosidase compare
Psest_0381 -0.5 -2.8 hypothetical protein compare
Psest_0175 -0.5 -3.0 Xaa-Pro aminopeptidase compare
Psest_1054 -0.5 -2.5 Diaminopimelate decarboxylase compare
Psest_0837 -0.5 -1.6 Putative lipid carrier protein compare
Psest_3304 -0.5 -2.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2435 -0.5 -2.4 Transcriptional regulator compare
Psest_1075 -0.5 -1.8 Predicted transcriptional regulators compare
Psest_0844 -0.5 -1.9 High-affinity Fe2+/Pb2+ permease compare
Psest_0415 -0.5 -2.2 dethiobiotin synthase compare
Psest_2240 -0.5 -1.3 hypothetical protein compare
Psest_0227 -0.5 -0.9 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_1525 -0.5 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_2132 -0.5 -4.0 Outer membrane protein compare
Psest_0687 -0.5 -2.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2243 -0.5 -0.7 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1067 -0.5 -1.8 hypothetical protein compare
Psest_4063 -0.5 -1.7 sulfate ABC transporter, ATP-binding protein compare
Psest_0487 -0.5 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_1765 -0.5 -2.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3307 -0.5 -2.8 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0633 -0.5 -2.4 Phage integrase family. compare
Psest_3084 -0.5 -1.0 methyltransferase, putative compare
Psest_2454 -0.5 -0.7 Rhodanese-related sulfurtransferase compare
Psest_2133 -0.5 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_0999 -0.5 -1.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1986 -0.5 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_4044 -0.5 -2.8 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1388 -0.5 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_4305 -0.5 -1.5 NAD-dependent aldehyde dehydrogenases compare
Psest_1958 -0.5 -2.1 Glutaredoxin-like domain (DUF836). compare
Psest_0259 -0.5 -0.5 cell division ATP-binding protein FtsE compare
Psest_3893 -0.4 -1.4 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_4103 -0.4 -0.9 AraC-type DNA-binding domain-containing proteins compare
Psest_0970 -0.4 -1.4 hypothetical protein compare
Psest_3505 -0.4 -2.3 Superfamily II DNA and RNA helicases compare
Psest_2414 -0.4 -1.4 TolR protein compare
Psest_3145 -0.4 -1.3 hypothetical protein compare
Psest_3651 -0.4 -1.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0531 -0.4 -2.7 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Psest_0869 -0.4 -1.5 Acetyltransferase (isoleucine patch superfamily) compare
Psest_0376 -0.4 -1.6 glucarate dehydratase compare
Psest_3823 -0.4 -1.3 hypothetical protein compare
Psest_1406 -0.4 -1.8 His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_3146 -0.4 -0.9 hypothetical protein compare
Psest_0852 -0.4 -1.8 glucose-6-phosphate 1-dehydrogenase compare
Psest_1111 -0.4 -1.5 Flp pilus assembly protein TadD, contains TPR repeats compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in lb experiments