Experiment set4H5 for Pseudomonas stutzeri RCH2

Compare to:

LB with Dimethyl Sulfoxide 5 vol%

200 most important genes:

  gene name fitness t score description  
Psest_0725 -3.6 -5.4 Negative regulator of beta-lactamase expression compare
Psest_4219 -2.7 -3.6 DNA polymerase I compare
Psest_1496 -2.6 -2.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_3664 -2.5 -4.4 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0062 -2.5 -11.9 tryptophan synthase, alpha subunit compare
Psest_1504 -2.5 -5.8 tol-pal system protein YbgF compare
Psest_2988 -2.3 -9.1 aspartate kinase, monofunctional class compare
Psest_2945 -2.2 -2.7 septum site-determining protein MinC compare
Psest_0257 -2.2 -3.9 Predicted Zn-dependent peptidases compare
Psest_0063 -2.0 -9.2 tryptophan synthase, beta subunit compare
Psest_1492 -2.0 -11.3 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3720 -1.8 -13.8 penicillin-binding protein, 1A family compare
Psest_1532 -1.8 -5.1 DNA recombination-dependent growth factor C compare
Psest_2308 -1.8 -2.5 Predicted Fe-S protein compare
Psest_1567 -1.7 -5.5 Transcriptional regulator compare
Psest_3816 -1.5 -1.5 DNA-directed RNA polymerase, omega subunit compare
Psest_3637 -1.5 -5.8 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_3546 -1.5 -1.7 Phosphatidylglycerophosphatase A and related proteins compare
Psest_1486 -1.5 -3.4 hypothetical protein compare
Psest_0212 -1.4 -1.3 exodeoxyribonuclease V, gamma subunit compare
Psest_3092 -1.4 -2.7 ribonuclease III, bacterial compare
Psest_3828 -1.4 -0.8 zinc-binding alcohol dehydrogenase family protein compare
Psest_3767 -1.4 -4.7 tyrosine recombinase XerC compare
Psest_0218 -1.3 -2.7 Acyl-CoA hydrolase compare
Psest_3129 -1.3 -1.8 tyrosine recombinase XerD compare
Psest_0515 -1.3 -4.7 rare lipoprotein A compare
Psest_1048 -1.3 -6.9 Uncharacterized paraquat-inducible protein A compare
Psest_2001 -1.2 -2.6 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1809 -1.2 -7.4 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_0521 -1.2 -8.6 lytic murein transglycosylase compare
Psest_2584 -1.2 -4.9 Phosphoribosylanthranilate isomerase compare
Psest_1282 -1.2 -2.8 Amidases related to nicotinamidase compare
Psest_3862 -1.2 -9.2 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3648 -1.2 -6.7 anthranilate phosphoribosyltransferase compare
Psest_3518 -1.2 -1.3 Transcriptional regulators compare
Psest_4103 -1.1 -1.7 AraC-type DNA-binding domain-containing proteins compare
Psest_1313 -1.1 -1.6 Uncharacterized conserved small protein compare
Psest_4191 -1.1 -2.2 Transcriptional regulator compare
Psest_2946 -1.1 -4.2 septum site-determining protein MinD compare
Psest_3317 -1.1 -3.8 Phosphotransferase System HPr (HPr) Family compare
Psest_2067 -1.1 -1.7 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0279 -1.1 -5.3 methionine biosynthesis protein MetW compare
Psest_1049 -1.0 -4.2 Uncharacterized paraquat-inducible protein A compare
Psest_1686 -1.0 -4.9 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2333 -1.0 -1.4 Protein of unknown function (DUF3359). compare
Psest_1050 -1.0 -7.8 Paraquat-inducible protein B compare
Psest_4098 -1.0 -2.7 Superfamily I DNA and RNA helicases compare
Psest_3270 -0.9 -2.8 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0673 -0.9 -3.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_0759 -0.9 -1.0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_2667 -0.9 -2.3 Uncharacterized protein involved in propionate catabolism compare
Psest_0313 -0.9 -3.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2025 -0.9 -1.5 cold shock domain protein CspD compare
Psest_2872 -0.9 -1.6 protein RecA compare
Psest_0845 -0.9 -0.8 hypothetical protein compare
Psest_3962 -0.9 -2.0 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_2585 -0.9 -1.6 pseudouridylate synthase I compare
Psest_2130 -0.9 -2.7 exodeoxyribonuclease III compare
Psest_1204 -0.9 -2.0 Transcriptional regulators compare
Psest_3474 -0.9 -2.1 Short-chain dehydrogenases of various substrate specificities compare
Psest_3697 -0.9 -1.0 Outer membrane lipoprotein carrier protein LolA. compare
Psest_2312 -0.8 -5.6 Small-conductance mechanosensitive channel compare
Psest_3650 -0.8 -6.1 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2334 -0.8 -6.8 Uncharacterized protein conserved in bacteria compare
Psest_0280 -0.8 -6.3 homoserine O-acetyltransferase compare
Psest_3545 -0.8 -2.1 clan AA aspartic protease, TIGR02281 family compare
Psest_0852 -0.8 -3.2 glucose-6-phosphate 1-dehydrogenase compare
Psest_1510 -0.8 -3.5 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2407 -0.8 -1.9 nitrite reductase [NAD(P)H], small subunit compare
Psest_4243 -0.8 -1.7 type VI secretion lipoprotein, VC_A0113 family compare
Psest_0082 -0.8 -1.9 Domain of unknown function (DUF892). compare
Psest_2719 -0.8 -3.1 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0193 -0.8 -0.9 conserved hypothetical protein compare
Psest_1814 -0.8 -5.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3649 -0.7 -4.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2243 -0.7 -1.0 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1665 -0.7 -2.8 hypothetical protein compare
Psest_3881 -0.7 -1.0 hypothetical protein compare
Psest_3351 -0.7 -4.2 peptide chain release factor 3 compare
Psest_0691 -0.7 -5.8 ribonuclease R compare
Psest_2332 -0.7 -5.3 Predicted acetyltransferase compare
Psest_1952 -0.7 -2.7 hypothetical protein compare
Psest_2764 -0.7 -1.0 hypothetical protein compare
Psest_2762 -0.7 -1.6 hypothetical protein compare
Psest_3699 -0.7 -2.5 Dehydrogenases (flavoproteins) compare
Psest_0187 -0.7 -2.0 Metal-dependent hydrolase compare
Psest_4199 -0.7 -2.6 general secretion pathway protein H compare
Psest_4183 -0.7 -1.6 PilZ domain. compare
Psest_0031 -0.7 -1.0 Uncharacterized conserved protein compare
Psest_0310 -0.7 -1.8 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3647 -0.7 -3.5 Indole-3-glycerol phosphate synthase compare
Psest_1284 -0.7 -2.8 exodeoxyribonuclease VII, large subunit compare
Psest_2643 -0.7 -1.1 Beta-glucosidase-related glycosidases compare
Psest_2671 -0.6 -1.4 Transcriptional regulator compare
Psest_1626 -0.6 -1.8 Predicted integral membrane protein compare
Psest_1031 -0.6 -4.1 Uncharacterized protein conserved in bacteria compare
Psest_0857 -0.6 -0.7 Membrane transporters of cations and cationic drugs compare
Psest_1877 -0.6 -1.6 AraC-type DNA-binding domain-containing proteins compare
Psest_0655 -0.6 -1.3 Chemotaxis signal transduction protein compare
Psest_1999 -0.6 -1.1 pseudouridine synthase compare
Psest_1475 -0.6 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_1535 -0.6 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_0558 -0.6 -0.6 urease, beta subunit compare
Psest_3893 -0.6 -1.9 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1942 -0.6 -3.4 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_3803 -0.6 -1.0 DNA repair protein radc compare
Psest_1296 -0.6 -3.9 excinuclease ABC, B subunit compare
Psest_0097 -0.6 -0.6 phosphonates metabolism transcriptional regulator PhnF compare
Psest_4280 -0.6 -2.2 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_0601 -0.6 -1.8 hypothetical protein compare
Psest_3047 -0.6 -1.2 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_4067 -0.6 -1.8 Predicted membrane protein compare
Psest_2153 -0.5 -1.7 formate dehydrogenase, gamma subunit compare
Psest_4363 -0.5 -3.5 ATPases involved in chromosome partitioning compare
Psest_3391 -0.5 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_1939 -0.5 -2.9 Tetratricopeptide repeat. compare
Psest_0195 -0.5 -2.9 Small integral membrane protein compare
Psest_1281 -0.5 -3.2 Small-conductance mechanosensitive channel compare
Psest_3008 -0.5 -1.2 cobyric acid synthase CobQ compare
Psest_1144 -0.5 -2.6 AmpG-related permease compare
Psest_2981 -0.5 -1.4 sodium pump decarboxylases, gamma subunit compare
Psest_3878 -0.5 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1056 -0.5 -1.3 2-isopropylmalate synthase, bacterial type compare
Psest_2714 -0.5 -1.3 7-cyano-7-deazaguanine reductase compare
Psest_3401 -0.5 -3.0 DNA repair protein RadA compare
Psest_2446 -0.5 -1.2 acetyl-CoA acetyltransferases compare
Psest_1860 -0.5 -1.1 Uncharacterized conserved protein compare
Psest_0646 -0.5 -2.3 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Psest_1953 -0.5 -4.0 deoxyguanosinetriphosphate triphosphohydrolase, putative compare
Psest_1695 -0.5 -1.5 Tfp pilus assembly protein PilZ compare
Psest_0113 -0.5 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_0394 -0.5 -2.7 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Psest_1143 -0.5 -3.2 Small-conductance mechanosensitive channel compare
Psest_0216 -0.5 -1.8 Predicted permeases compare
Psest_1372 -0.5 -1.9 Methyl-accepting chemotaxis protein compare
Psest_1653 -0.5 -4.1 transcription-repair coupling factor (mfd) compare
Psest_0376 -0.5 -1.7 glucarate dehydratase compare
Psest_4151 -0.5 -1.5 Flagellar hook capping protein compare
Psest_1370 -0.5 -1.6 hypothetical protein compare
Psest_2424 -0.5 -1.1 K+ transport systems, NAD-binding component compare
Psest_3554 -0.5 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_1700 -0.5 -2.5 Transcriptional regulator compare
Psest_3810 -0.5 -1.6 orotate phosphoribosyltransferase compare
Psest_1305 -0.5 -1.5 Heat shock protein compare
Psest_0316 -0.5 -0.7 Cytochrome c556 compare
Psest_1640 -0.5 -3.9 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_1428 -0.5 -1.4 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_1772 -0.5 -1.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3275 -0.5 -2.3 Stringent starvation protein B compare
Psest_2756 -0.5 -1.0 hypothetical protein compare
Psest_1008 -0.5 -0.9 hypothetical protein compare
Psest_3064 -0.5 -1.9 hypothetical protein compare
Psest_3732 -0.5 -3.1 polyphosphate kinase 1 compare
Psest_1651 -0.5 -1.8 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_1945 -0.5 -1.9 hypothetical protein compare
Psest_0311 -0.5 -2.0 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_2415 -0.5 -1.6 TolQ protein compare
Psest_3701 -0.5 -1.0 3-oxoacyl-(acyl-carrier-protein) synthase compare
Psest_3289 -0.5 -3.0 prepilin-type N-terminal cleavage/methylation domain compare
Psest_2581 -0.5 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0057 -0.5 -1.9 Predicted transcriptional regulators compare
Psest_0114 -0.5 -0.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_1111 -0.5 -1.2 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_4102 -0.5 -1.9 peroxiredoxin, Ohr subfamily compare
Psest_0650 -0.5 -1.6 RNA polymerase sigma factor, sigma-70 family compare
Psest_1525 -0.5 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_1217 -0.5 -2.3 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_3502 -0.4 -1.0 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_0202 -0.4 -2.8 diguanylate cyclase (GGDEF) domain compare
Psest_3497 -0.4 -1.7 Predicted metalloprotease compare
Psest_4070 -0.4 -3.4 PAS domain S-box compare
Psest_2278 -0.4 -1.5 coenzyme PQQ biosynthesis protein PqqD compare
Psest_3286 -0.4 -2.3 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_3413 -0.4 -1.3 hypothetical protein compare
Psest_4211 -0.4 -1.1 conserverd hypothetical protein compare
Psest_2266 -0.4 -1.8 hypothetical protein compare
Psest_3693 -0.4 -0.7 Glycosyltransferases involved in cell wall biogenesis compare
Psest_3756 -0.4 -1.6 hypothetical protein compare
Psest_3894 -0.4 -1.6 Carbon starvation protein, predicted membrane protein compare
Psest_1824 -0.4 -1.9 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1429 -0.4 -1.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit compare
Psest_1029 -0.4 -1.0 Regulator of competence-specific genes compare
Psest_1938 -0.4 -2.2 hypothetical protein compare
Psest_4209 -0.4 -1.3 Uncharacterized conserved small protein compare
Psest_1943 -0.4 -2.9 MoxR-like ATPases compare
Psest_2091 -0.4 -2.0 Molecular chaperone (small heat shock protein) compare
Psest_2369 -0.4 -2.0 Transcriptional regulator compare
Psest_4005 -0.4 -2.2 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_1073 -0.4 -1.6 TRAP-type mannitol/chloroaromatic compound transport system, small permease component compare
Psest_4194 -0.4 -2.1 Type II secretory pathway, component PulM compare
Psest_1101 -0.4 -2.4 Uncharacterized conserved protein compare
Psest_4157 -0.4 -1.9 hypothetical protein compare
Psest_1617 -0.4 -1.3 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_2578 -0.4 -3.2 O-succinylhomoserine sulfhydrylase compare
Psest_4064 -0.4 -1.3 Lactate dehydrogenase and related dehydrogenases compare
Psest_2365 -0.4 -1.2 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_3414 -0.4 -2.8 hypothetical protein compare
Psest_3904 -0.4 -0.4 hypothetical protein compare
Psest_1919 -0.4 -0.9 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_3452 -0.4 -1.8 Zn-dependent hydrolases, including glyoxylases compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Dimethyl Sulfoxide across organisms