Experiment set4H46 for Pseudomonas stutzeri RCH2

Compare to:

LB with Gentamicin sulfate salt 0.0016 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_0719 -5.4 -6.5 Uncharacterized protein conserved in bacteria compare
Psest_1724 -5.4 -3.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3648 -5.2 -7.9 anthranilate phosphoribosyltransferase compare
Psest_0013 -5.1 -12.3 Lauroyl/myristoyl acyltransferase compare
Psest_0498 -5.0 -2.3 ribosome small subunit-dependent GTPase A compare
Psest_2944 -5.0 -8.3 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_0309 -4.8 -2.3 RND family efflux transporter, MFP subunit compare
Psest_2945 -4.8 -3.0 septum site-determining protein MinC compare
Psest_0062 -4.8 -4.7 tryptophan synthase, alpha subunit compare
Psest_2584 -4.8 -7.9 Phosphoribosylanthranilate isomerase compare
Psest_3810 -4.7 -3.2 orotate phosphoribosyltransferase compare
Psest_2712 -4.7 -7.8 Surface lipoprotein compare
Psest_3647 -4.3 -9.1 Indole-3-glycerol phosphate synthase compare
Psest_0260 -4.2 -2.3 Cell division protein compare
Psest_0298 -4.1 -7.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2946 -4.0 -6.0 septum site-determining protein MinD compare
Psest_1496 -3.9 -1.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_3307 -3.8 -9.1 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0998 -3.7 -5.8 poly(A) polymerase compare
Psest_0296 -3.6 -15.9 glutathione synthetase, prokaryotic compare
Psest_1919 -3.5 -2.1 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_2775 -3.5 -4.1 Glycerol-3-phosphate dehydrogenase compare
Psest_0063 -3.5 -4.7 tryptophan synthase, beta subunit compare
Psest_1700 -3.5 -6.4 Transcriptional regulator compare
Psest_3697 -3.3 -1.6 Outer membrane lipoprotein carrier protein LolA. compare
Psest_4078 -3.3 -3.9 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3745 -3.3 -5.0 Uncharacterized enzyme of heme biosynthesis compare
Psest_1640 -3.1 -9.6 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_1241 -3.1 -10.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_1704 -3.0 -2.1 Dehydrogenases (flavoproteins) compare
Psest_3304 -3.0 -7.5 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3305 -3.0 -8.8 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0691 -3.0 -14.9 ribonuclease R compare
Psest_3732 -3.0 -9.8 polyphosphate kinase 1 compare
Psest_0417 -3.0 -3.5 Acyl-CoA dehydrogenases compare
Psest_0489 -3.0 -4.3 phosphoserine phosphatase SerB compare
Psest_0393 -3.0 -5.3 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0277 -2.9 -1.8 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3650 -2.9 -12.0 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2872 -2.9 -1.9 protein RecA compare
Psest_0397 -2.9 -12.4 Small-conductance mechanosensitive channel compare
Psest_1879 -2.9 -3.4 Trk-type K+ transport systems, membrane components compare
Psest_3323 -2.9 -3.4 ribonuclease, Rne/Rng family compare
Psest_0515 -2.9 -3.4 rare lipoprotein A compare
Psest_1567 -2.9 -5.3 Transcriptional regulator compare
Psest_0697 -2.9 -4.5 ribosomal protein L9 compare
Psest_0020 -2.9 -3.9 K+ transport systems, NAD-binding component compare
Psest_2316 -2.8 -13.4 phosphoenolpyruvate synthase compare
Psest_2714 -2.8 -2.8 7-cyano-7-deazaguanine reductase compare
Psest_3936 -2.7 -2.4 ATP-dependent protease HslVU, peptidase subunit compare
Psest_1149 -2.7 -3.7 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_3649 -2.6 -8.9 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3306 -2.6 -5.2 conserved hypothetical integral membrane protein compare
Psest_3927 -2.6 -7.7 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2001 -2.6 -4.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2719 -2.6 -4.2 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3303 -2.5 -7.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2123 -2.5 -1.9 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3937 -2.5 -1.1 ATP-dependent protease HslVU, ATPase subunit compare
Psest_1947 -2.5 -4.7 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2850 -2.5 -1.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1905 -2.5 -2.1 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_3767 -2.4 -4.8 tyrosine recombinase XerC compare
Psest_1479 -2.4 -5.5 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_0445 -2.4 -14.8 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0161 -2.4 -4.3 Membrane-bound metallopeptidase compare
Psest_1765 -2.4 -6.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3129 -2.3 -1.9 tyrosine recombinase XerD compare
Psest_1472 -2.3 -9.5 Protein of unknown function (DUF3108). compare
Psest_1417 -2.3 -0.9 hypothetical protein compare
Psest_2023 -2.3 -4.6 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3536 -2.3 -1.1 hypothetical protein compare
Psest_1242 -2.2 -3.0 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_4219 -2.2 -1.5 DNA polymerase I compare
Psest_1506 -2.2 -5.5 queuosine biosynthesis protein QueC compare
Psest_4345 -2.2 -8.5 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2372 -2.2 -8.8 Integral membrane protein, interacts with FtsH conserved
Psest_0542 -2.2 -5.7 AMP nucleosidase compare
Psest_1505 -2.2 -2.5 Organic radical activating enzymes compare
Psest_3626 -2.2 -6.1 hypothetical protein compare
Psest_3123 -2.1 -3.7 dihydroorotase, homodimeric type compare
Psest_3178 -2.1 -4.0 formyltetrahydrofolate deformylase compare
Psest_1163 -2.1 -4.8 diguanylate cyclase (GGDEF) domain compare
Psest_0442 -2.1 -5.3 ATPases of the AAA+ class compare
Psest_0259 -2.1 -1.7 cell division ATP-binding protein FtsE compare
Psest_4222 -2.1 -8.7 Predicted Rossmann fold nucleotide-binding protein compare
Psest_3884 -2.0 -0.5 Signal transduction histidine kinase compare
Psest_2293 -2.0 -1.8 hypothetical protein compare
Psest_2935 -2.0 -1.3 hypothetical protein compare
Psest_2011 -2.0 -6.9 Predicted permease compare
Psest_2933 -2.0 -9.6 Signal transduction histidine kinase compare
Psest_1663 -2.0 -3.1 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2025 -2.0 -1.3 cold shock domain protein CspD compare
Psest_1975 -2.0 -6.6 Predicted transcriptional regulators compare
Psest_2304 -1.9 -1.7 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3700 -1.9 -0.5 hypothetical protein compare
Psest_0696 -1.9 -6.5 hypothetical protein compare
Psest_0297 -1.9 -5.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3148 -1.9 -1.5 hypothetical protein compare
Psest_1871 -1.9 -5.5 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_3433 -1.9 -6.9 ATP-binding cassette protein, ChvD family compare
Psest_0218 -1.9 -3.0 Acyl-CoA hydrolase compare
Psest_3222 -1.9 -2.5 Putative threonine efflux protein compare
Psest_1058 -1.9 -2.0 ribosomal-protein-alanine acetyltransferase compare
Psest_0172 -1.9 -7.0 Uncharacterized protein conserved in bacteria compare
Psest_3664 -1.8 -2.7 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0422 -1.8 -4.9 Site-specific recombinase XerD compare
Psest_0212 -1.8 -1.2 exodeoxyribonuclease V, gamma subunit compare
Psest_2580 -1.8 -6.1 Uncharacterized membrane protein, required for colicin V production compare
Psest_0790 -1.8 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_3146 -1.8 -1.9 hypothetical protein compare
Psest_1563 -1.8 -2.4 Protein of unknown function (DUF548). compare
Psest_1139 -1.8 -5.8 PAS domain S-box compare
Psest_3367 -1.8 -1.3 translation initation factor SUI1, putative, prokaryotic compare
Psest_1204 -1.8 -2.1 Transcriptional regulators compare
Psest_0704 -1.8 -6.3 Uncharacterized protein conserved in bacteria compare
Psest_3645 -1.7 -8.5 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3140 -1.7 -6.4 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Psest_4113 -1.7 -6.2 hypothetical protein compare
Psest_1695 -1.7 -3.6 Tfp pilus assembly protein PilZ compare
Psest_4396 -1.7 -7.3 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0516 -1.6 -8.0 D-alanyl-D-alanine carboxypeptidase compare
Psest_1870 -1.6 -1.5 Transcriptional regulators compare
Psest_1217 -1.6 -7.2 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_0028 -1.6 -3.6 Coproporphyrinogen III oxidase compare
Psest_0310 -1.6 -3.7 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2285 -1.6 -3.5 ATP-dependent protease La compare
Psest_4303 -1.6 -0.8 HEAT repeat. compare
Psest_1518 -1.6 -2.4 tRNA_Ser_CGA compare
Psest_2981 -1.6 -2.7 sodium pump decarboxylases, gamma subunit compare
Psest_0708 -1.6 -1.9 outer membrane assembly lipoprotein YfiO compare
Psest_2997 -1.6 -7.7 Long-chain fatty acid transport protein compare
Psest_1631 -1.6 -1.1 Uncharacterized conserved small protein compare
Psest_0529 -1.5 -7.5 Putative Mg2+ and Co2+ transporter CorC compare
Psest_3998 -1.5 -4.6 glutamate--cysteine ligase compare
Psest_3449 -1.5 -0.8 DJ-1 family protein compare
Psest_1295 -1.5 -6.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2339 -1.5 -5.3 transcription elongation factor GreB compare
Psest_4051 -1.5 -2.6 molybdenum-pterin binding domain compare
Psest_0207 -1.5 -1.7 hypothetical protein compare
Psest_0440 -1.5 -3.0 hypothetical protein compare
Psest_0311 -1.5 -4.0 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_3777 -1.5 -2.1 diguanylate cyclase (GGDEF) domain compare
Psest_3535 -1.5 -2.7 hypothetical protein compare
Psest_3373 -1.4 -4.2 Tfp pilus assembly protein PilX compare
Psest_2708 -1.4 -7.5 transaldolase compare
Psest_2612 -1.4 -3.2 hypothetical protein compare
Psest_4097 -1.4 -7.5 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_4363 -1.4 -6.1 ATPases involved in chromosome partitioning compare
Psest_1041 -1.4 -9.3 Predicted membrane protein compare
Psest_4364 -1.4 -4.0 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_1514 -1.4 -5.2 Glycine cleavage system regulatory protein compare
Psest_1317 -1.3 -3.2 phosphonate ABC transporter, permease protein PhnE compare
Psest_1813 -1.3 -6.3 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3301 -1.3 -2.6 Predicted transcriptional regulator, BolA superfamily compare
Psest_1040 -1.3 -4.6 Sulfite oxidase and related enzymes compare
Psest_4191 -1.3 -1.5 Transcriptional regulator compare
Psest_1824 -1.3 -4.2 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2037 -1.3 -4.5 uroporphyrin-III C-methyltransferase compare
Psest_1143 -1.3 -5.3 Small-conductance mechanosensitive channel compare
Psest_1120 -1.3 -3.5 uracil phosphoribosyltransferase compare
Psest_1012 -1.3 -4.3 Signal transduction histidine kinase compare
Psest_0575 -1.3 -0.7 HrpA-like helicases compare
Psest_2847 -1.3 -3.6 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_1542 -1.3 -3.6 Uncharacterized proteins, homologs of lactam utilization protein B compare
Psest_1814 -1.3 -9.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4393 -1.3 -5.1 Capsule polysaccharide export protein compare
Psest_0300 -1.3 -5.8 Methyl-accepting chemotaxis protein compare
Psest_1873 -1.3 -4.6 Predicted permease, DMT superfamily compare
Psest_2581 -1.3 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_3435 -1.3 -4.4 hypothetical protein compare
Psest_3890 -1.3 -0.9 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0678 -1.2 -1.9 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_0413 -1.2 -3.8 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3230 -1.2 -4.1 Uncharacterized conserved protein compare
Psest_2882 -1.2 -4.7 hypothetical protein compare
Psest_2333 -1.2 -0.9 Protein of unknown function (DUF3359). compare
Psest_0411 -1.2 -6.5 biotin synthetase compare
Psest_2848 -1.2 -2.4 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1302 -1.2 -3.6 Predicted thioesterase compare
Psest_4010 -1.2 -1.4 peroxiredoxin, OsmC subfamily compare
Psest_4124 -1.2 -2.2 hypothetical protein compare
Psest_3374 -1.2 -7.0 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_0057 -1.2 -2.8 Predicted transcriptional regulators compare
Psest_4100 -1.2 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2643 -1.2 -1.8 Beta-glucosidase-related glycosidases compare
Psest_2067 -1.2 -1.2 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0346 -1.2 -2.2 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_2478 -1.2 -4.2 Na+/serine symporter compare
Psest_3860 -1.2 -3.7 Predicted permeases compare
Psest_4252 -1.2 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_2561 -1.1 -0.9 hypothetical protein compare
Psest_0952 -1.1 -2.0 Uncharacterized conserved protein compare
Psest_2018 -1.1 -2.4 Uncharacterized conserved protein compare
Psest_2085 -1.1 -3.5 Periplasmic serine proteases (ClpP class) compare
Psest_3717 -1.1 -4.1 Tfp pilus assembly protein PilO compare
Psest_2896 -1.1 -3.0 hypothetical protein compare
Psest_3990 -1.1 -4.6 PAP2 superfamily. compare
Psest_3226 -1.1 -1.0 Predicted membrane protein compare
Psest_1804 -1.1 -3.2 Superfamily II DNA and RNA helicases compare


Specific Phenotypes

For 31 genes in this experiment

For stress Gentamicin sulfate salt in Pseudomonas stutzeri RCH2

For stress Gentamicin sulfate salt across organisms