Experiment set4H41 for Shewanella amazonensis SB2B

Compare to:

LB with Doxycycline hyclate 0.0001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Sama_3225 +1.6 10.0 tRNA-dihydrouridine synthase B (RefSeq) compare
Sama_0792 +1.5 12.2 TetR family transcriptional regulator (RefSeq) compare
Sama_1232 +1.4 4.0 peptide ABC transporter, ATP-binding protein (RefSeq) compare
Sama_1235 +1.0 6.0 peptide ABC transporter, periplasmic peptide-binding protein (RefSeq) compare
Sama_3090 +0.9 4.8 nitrogen regulatory IIA protein (RefSeq) compare
Sama_1231 +0.8 3.9 peptide ABC transporter, ATP-binding protein (RefSeq) compare
Sama_0375 aceE +0.7 5.0 pyruvate dehydrogenase subunit E1 (RefSeq) compare
Sama_1234 +0.7 1.6 peptide ABC transporter, permease protein (RefSeq) compare
Sama_2162 +0.6 3.3 putative phosphohistidine phosphatase, SixA (RefSeq) compare
Sama_3104 +0.6 2.3 hypothetical protein (RefSeq) compare
Sama_2167 fadJ +0.6 4.6 multifunctional fatty acid oxidation complex subunit alpha (RefSeq) compare
Sama_1819 +0.6 3.1 hypothetical protein (RefSeq) compare
Sama_0264 +0.6 4.4 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Sama_0401 +0.6 5.3 LysR family transcriptional regulator (RefSeq) compare
Sama_2216 +0.6 2.2 hypothetical protein (RefSeq) compare
Sama_1646 +0.6 3.1 D-alanyl-D-alanine carboxypeptidase-related protein (RefSeq) compare
Sama_2872 +0.6 3.6 hypothetical protein (RefSeq) compare
Sama_2044 +0.5 2.0 hypothetical protein (RefSeq) compare
Sama_1243 +0.5 1.8 DNA uptake protein-related DNA-binding protein (RefSeq) compare
Sama_2266 +0.5 3.8 amino acid/peptide transporter (RefSeq) compare
Sama_2168 fadI +0.5 4.0 3-ketoacyl-CoA thiolase (RefSeq) compare
Sama_0376 aceF +0.5 2.3 dihydrolipoamide acetyltransferase (RefSeq) compare
Sama_1746 +0.5 1.1 hypothetical protein (RefSeq) compare
Sama_3267 +0.5 2.3 TetR family transcriptional regulator (RefSeq) compare
Sama_1233 +0.5 1.3 peptide ABC transporter, permease protein (RefSeq) compare
Sama_2765 +0.5 2.7 hypothetical protein (RefSeq) compare
Sama_1934 +0.5 3.3 long-chain-fatty-acid--CoA ligase (RefSeq) compare
Sama_1459 +0.5 2.5 methyl-accepting chemotaxis protein (RefSeq) compare
Sama_1874 +0.5 2.3 hypothetical protein (RefSeq) compare
Sama_0270 +0.5 2.9 prolipoprotein diacylglyceryl transferase (RefSeq) compare
Sama_2033 +0.5 2.3 lipoprotein Blc (RefSeq) compare
Sama_1636 +0.5 2.2 no description compare
Sama_0402 +0.4 3.7 HlyD family secretion protein (RefSeq) compare
Sama_2730 +0.4 2.1 hypothetical protein (RefSeq) compare
Sama_2960 +0.4 2.1 hypothetical protein (RefSeq) compare
Sama_1915 +0.4 2.4 hypothetical protein (RefSeq) compare
Sama_2374 +0.4 1.8 CopG family transcriptional regulator (RefSeq) compare
Sama_2564 +0.4 2.4 hypothetical protein (RefSeq) compare
Sama_R0118 +0.4 1.0 tRNA-Gly (RefSeq) compare
Sama_2049 metG +0.4 1.3 methionyl-tRNA synthetase (RefSeq) compare
Sama_1522 +0.4 1.3 small component of lactate uptake system (from data) compare
Sama_1022 +0.4 0.8 phosphatidylglycerophosphatase (RefSeq) compare
Sama_3543 +0.4 3.5 glutathione reductase (RefSeq) compare
Sama_0661 +0.4 0.8 hypothetical protein (RefSeq) compare
Sama_1650 +0.4 2.7 phosphotransferase system, enzyme I (RefSeq) compare
Sama_1720 +0.4 0.7 hypothetical protein (RefSeq) compare
Sama_2250 +0.4 1.4 acetoacetyl-CoA reductase (RefSeq) compare
Sama_2323 +0.4 1.9 flagellar biosynthetic protein FlgN (RefSeq) compare
Sama_3402 +0.4 1.3 D-tyrosyl-tRNA(Tyr) deacylase (RefSeq) compare
Sama_1702 +0.4 1.8 LexA regulated protein (RefSeq) compare
Sama_3195 +0.4 0.8 acetyl-CoA carboxylase, biotin carboxyl carrier protein (RefSeq) compare
Sama_2304 +0.4 2.7 flagellar hook-associated 2-like protein (RefSeq) compare
Sama_R0001 +0.4 2.1 16S ribosomal RNA (RefSeq) compare
Sama_1956 +0.4 2.2 hypothetical protein (RefSeq) compare
Sama_2558 +0.4 1.8 hypothetical protein (RefSeq) compare
Sama_3094 +0.4 1.5 hypothetical protein (RefSeq) compare
Sama_1594 +0.4 1.0 hypothetical protein (RefSeq) compare
Sama_1777 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_1710 +0.3 1.0 alpha keto acid dehydrogenase complex, E1 component, beta subunit (RefSeq) compare
Sama_3121 +0.3 1.9 hypothetical protein (RefSeq) compare
Sama_1373 +0.3 0.9 hypothetical protein (RefSeq) compare
Sama_0403 +0.3 3.0 drug resistance transporter, EmrB/QacA family protein (RefSeq) compare
Sama_1752 +0.3 2.2 hypothetical protein (RefSeq) compare
Sama_1390 +0.3 2.1 hypothetical protein (RefSeq) compare
Sama_1635 +0.3 1.5 hypothetical protein (RefSeq) compare
Sama_1179 +0.3 1.4 hypothetical protein (RefSeq) compare
Sama_2324 +0.3 1.9 hypothetical protein (RefSeq) compare
Sama_0711 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_2336 +0.3 2.2 N-acylneuraminate cytidylyltransferase (RefSeq) compare
Sama_0110 +0.3 1.9 pantetheine-phosphate adenylyltransferase (RefSeq) compare
Sama_2166 +0.3 0.9 hypothetical protein (RefSeq) compare
Sama_1995 +0.3 1.7 DNA ligase (RefSeq) compare
Sama_1906 +0.3 2.5 HlyD family-like protein (RefSeq) compare
Sama_1882 +0.3 1.7 LysR family transcriptional regulator (RefSeq) compare
Sama_2480 +0.3 2.1 hypothetical protein (RefSeq) compare
Sama_1618 +0.3 1.8 CBS domain-containing protein (RefSeq) compare
Sama_0972 +0.3 1.8 hypothetical protein (RefSeq) compare
Sama_1381 fabG +0.3 1.7 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) compare
Sama_2789 +0.3 1.1 glyoxalase family protein (RefSeq) compare
Sama_2514 +0.3 2.2 hypothetical protein (RefSeq) compare
Sama_1837 +0.3 1.5 lactoylglutathione lyase (RefSeq) compare
Sama_0168 +0.3 1.3 general secretion pathway protein C (RefSeq) compare
Sama_0361 +0.3 2.5 peptidase M23B (RefSeq) compare
Sama_0970 +0.3 2.3 TatD-related deoxyribonuclease (RefSeq) compare
Sama_3323 +0.3 1.1 hypothetical protein (RefSeq) compare
Sama_1974 +0.3 1.3 Cytidine deaminase (EC 3.5.4.5) (from data) compare
Sama_0285 +0.3 1.5 nucleotidase (RefSeq) compare
Sama_0901 +0.3 1.8 cytochrome c, class II (RefSeq) compare
Sama_1823 +0.3 1.4 hypothetical protein (RefSeq) compare
Sama_2052 +0.3 1.0 hypothetical protein (RefSeq) compare
Sama_2142 +0.3 1.8 metallo-beta-lactamase family protein (RefSeq) compare
Sama_1748 +0.3 1.6 hypothetical protein (RefSeq) compare
Sama_1885 +0.3 1.2 Slt family transglycosylase (RefSeq) compare
Sama_2848 +0.3 1.3 SpoOM-related protein (RefSeq) compare
Sama_0750 +0.3 2.1 catalase-like protein (RefSeq) compare
Sama_2020 +0.3 1.5 16 kDa heat shock protein A (RefSeq) compare
Sama_2790 +0.3 1.7 hypothetical protein (RefSeq) compare
Sama_2329 +0.3 2.1 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis (RefSeq) compare
Sama_0845 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_0772 +0.3 1.7 ABC transporter, ATP-binding protein (RefSeq) compare
Sama_1308 +0.3 1.1 hypothetical protein (RefSeq) compare
Sama_1200 +0.3 1.8 pyridoxal-dependent decarboxylase (RefSeq) compare
Sama_3089 +0.3 1.8 ribosomal subunit interface protein (RefSeq) compare
Sama_2161 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_2103 +0.3 1.2 putative 5-carboxymethyl-2-hydroxymuconate D-isomerase (RefSeq) compare
Sama_2799 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_1496 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_0771 +0.3 1.3 hypoxanthine phosphoribosyltransferase (RefSeq) compare
Sama_1492 +0.3 1.1 hypothetical protein (RefSeq) compare
Sama_2495 +0.3 1.8 response regulator receiver protein (RefSeq) compare
Sama_2864 +0.3 1.1 ABC transporter related (RefSeq) compare
Sama_0162 +0.3 1.5 biopolymer transport protein ExbD/TolR (RefSeq) compare
Sama_2832 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_2917 +0.3 2.3 aminopeptidase N (RefSeq) compare
Sama_1432 +0.3 1.4 GCN5-related N-acetyltransferase (RefSeq) compare
Sama_0099 +0.3 2.0 TetR family transcriptional regulator (RefSeq) compare
Sama_1857 +0.3 1.0 thiamine biosynthesis protein ThiS (RefSeq) compare
Sama_0849 +0.3 2.2 M24/M37 family peptidase (RefSeq) compare
Sama_1452 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_3154 +0.3 1.6 hypothetical protein (RefSeq) compare
Sama_2058 +0.3 0.7 cold-shock DNA-binding domain-containing protein (RefSeq) compare
Sama_2310 flgJ +0.3 1.5 flagellar rod assembly protein/muramidase FlgJ (RefSeq) compare
Sama_3357 +0.3 1.1 putative lipoprotein (RefSeq) compare
Sama_2716 +0.2 1.7 hypothetical protein (RefSeq) compare
Sama_2318 flgB +0.2 1.1 flagellar basal body rod protein FlgB (RefSeq) compare
Sama_1054 +0.2 1.6 membrane protein (RefSeq) compare
Sama_1304 +0.2 1.4 component of chlorite stress sensing system with DUF692 (from data) compare
Sama_1638 +0.2 1.2 hypothetical protein (RefSeq) compare
Sama_0749 +0.2 1.2 hypothetical protein (RefSeq) compare
Sama_1714 +0.2 1.2 no description compare
Sama_2846 +0.2 1.2 hypothetical protein (RefSeq) compare
Sama_2306 +0.2 1.3 flagellin-like protein (RefSeq) compare
Sama_1694 +0.2 1.4 hypothetical protein (RefSeq) compare
Sama_2330 +0.2 1.4 hypothetical protein (RefSeq) compare
Sama_1088 +0.2 1.1 glutathione S-transferase family protein (RefSeq) compare
Sama_1460 +0.2 1.3 acetyltransferase (RefSeq) compare
Sama_1672 +0.2 1.0 hydrogenase assembly chaperone hypC/hupF (RefSeq) compare
Sama_2778 +0.2 1.1 hypothetical protein (RefSeq) compare
Sama_2430 +0.2 0.9 hypothetical protein (RefSeq) compare
Sama_1865 +0.2 1.4 hypothetical protein (RefSeq) compare
Sama_0910 +0.2 1.9 hypothetical protein (RefSeq) compare
Sama_2467 +0.2 1.4 hypothetical protein (RefSeq) compare
Sama_3091 +0.2 1.8 hypothetical protein (RefSeq) compare
Sama_3489 +0.2 1.7 hypothetical protein (RefSeq) compare
Sama_1124 +0.2 0.7 hypothetical protein (RefSeq) compare
Sama_2949 +0.2 1.7 D-3-phosphoglycerate dehydrogenase (RefSeq) compare
Sama_2767 +0.2 1.4 hypothetical protein (RefSeq) compare
Sama_2988 +0.2 1.5 L-lysine exporter, putative (RefSeq) compare
Sama_0573 +0.2 1.8 alkaline phosphatase (RefSeq) compare
Sama_1814 +0.2 1.0 pyruvate kinase (RefSeq) compare
Sama_2383 +0.2 1.1 hypothetical protein (RefSeq) compare
Sama_2560 +0.2 1.3 hypothetical protein (RefSeq) compare
Sama_1436 +0.2 1.2 hypothetical protein (RefSeq) compare
Sama_3536 +0.2 1.7 pseudouridine synthase RluA-like protein (RefSeq) compare
Sama_0916 +0.2 2.0 sodium:alanine symporter family protein (RefSeq) compare
Sama_1824 +0.2 1.5 pyridoxal-5'-phosphate-dependent enzyme, beta subunit (RefSeq) compare
Sama_1085 +0.2 0.9 hypothetical protein (RefSeq) compare
Sama_1575 +0.2 1.4 hypothetical protein (RefSeq) compare
Sama_0083 +0.2 2.0 alpha/beta hydrolase fold (RefSeq) compare
Sama_2651 +0.2 0.9 hypothetical protein (RefSeq) compare
Sama_1645 +0.2 1.5 alpha/beta hydrolase fold (RefSeq) compare
Sama_2858 +0.2 1.5 curli production assembly/transport component CsgF, putative (RefSeq) compare
Sama_1562 +0.2 0.8 ferrichrome-binding protein (RefSeq) compare
Sama_0253 +0.2 1.6 hypothetical protein (RefSeq) compare
Sama_0061 +0.2 1.6 rhodanese-like protein (RefSeq) compare
Sama_1319 +0.2 1.6 symporter for L-glutamate, L-glutamine, and L-aspartate (from data) compare
Sama_2292 +0.2 1.4 flagellar hook-length control protein FliK (RefSeq) compare
Sama_2948 +0.2 1.2 response regulator receiver protein (RefSeq) compare
Sama_2774 +0.2 1.7 NTPase (RefSeq) compare
Sama_2294 fliI +0.2 1.5 flagellum-specific ATP synthase (RefSeq) compare
Sama_2806 +0.2 1.0 hypothetical protein (RefSeq) compare
Sama_1805 +0.2 1.2 aromatic amino acid aminotransferase (RefSeq) compare
Sama_3338 +0.2 1.4 hypothetical protein (RefSeq) compare
Sama_2125 +0.2 0.7 putative transcriptional regulator (RefSeq) compare
Sama_1471 +0.2 1.2 membrane-fusion protein (RefSeq) compare
Sama_2414 +0.2 1.5 OsmC family protein (RefSeq) compare
Sama_1226 +0.2 1.4 endopeptidase La (RefSeq) compare
Sama_1999 +0.2 1.7 ribosomal protein S6 modification protein, putative (RefSeq) compare
Sama_0360 +0.2 0.7 hypothetical protein (RefSeq) compare
Sama_1721 +0.2 0.8 hypothetical protein (RefSeq) compare
Sama_1634 +0.2 1.0 hypothetical protein (RefSeq) compare
Sama_1126 +0.2 1.0 acetyltransferase (RefSeq) compare
Sama_0559 +0.2 1.5 hypothetical protein (RefSeq) compare
Sama_1879 +0.2 1.3 hypothetical protein (RefSeq) compare
Sama_1134 purU +0.2 1.5 formyltetrahydrofolate deformylase (RefSeq) compare
Sama_1689 +0.2 1.6 peptidase, putative (RefSeq) compare
Sama_3389 +0.2 1.7 FAD-binding protein (RefSeq) compare
Sama_3054 +0.2 1.1 hypothetical protein (RefSeq) compare
Sama_1652 +0.2 0.8 hypothetical protein (RefSeq) compare
Sama_1725 +0.2 1.0 hypothetical protein (RefSeq) compare
Sama_2432 motB +0.2 1.4 flagellar motor protein MotB (RefSeq) compare
Sama_1456 +0.2 1.2 hypothetical protein (RefSeq) compare
Sama_0911 +0.2 0.8 hypothetical protein (RefSeq) compare
Sama_2459 +0.2 1.2 acetyltransferase (RefSeq) compare
Sama_0097 tdh +0.2 1.7 L-threonine 3-dehydrogenase (RefSeq) compare
Sama_R0099 +0.2 0.5 tRNA-Arg (RefSeq) compare
Sama_3467 +0.2 1.1 cell division ABC transporter, ATP-binding protein FtsE (RefSeq) compare
Sama_2763 +0.2 1.0 acetyltransferase (RefSeq) compare
Sama_2492 +0.2 1.3 hypothetical protein (RefSeq) compare
Sama_0365 +0.2 1.5 hypothetical protein (RefSeq) compare


Specific Phenotypes

For 3 genes in this experiment

For stress Doxycycline hyclate in Shewanella amazonensis SB2B

For stress Doxycycline hyclate across organisms