Experiment set4H40 for Shewanella amazonensis SB2B
LB with D-Cycloserine 0.03125 mg/ml
Group: stressMedia: LB + D-Cycloserine (0.03125 mg/ml)
Culturing: SB2B_ML5, 48 well microplate; Tecan Infinite F200, Aerobic, at 37 (C), shaken=orbital
By: Adam on 7/26/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 591 D1,D2
Specific Phenotypes
For 14 genes in this experiment
For stress D-Cycloserine in Shewanella amazonensis SB2B
For stress D-Cycloserine across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fructose and mannose metabolism
- Ascorbate and aldarate metabolism
- Glutamate metabolism
- Tryptophan metabolism
- Selenoamino acid metabolism
- Aminosugars metabolism
- Lipopolysaccharide biosynthesis
- Ether lipid metabolism
- Sphingolipid metabolism
- Thiamine metabolism
- Riboflavin metabolism
- Nicotinate and nicotinamide metabolism
- Nitrogen metabolism
- Biosynthesis of siderophore group nonribosomal peptides
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-glutamate biosynthesis I | 2 | 2 | 2 |
| L-glutamine degradation II | 1 | 1 | 1 |
| L-glutamine degradation I | 1 | 1 | 1 |
| ammonia assimilation cycle III | 3 | 3 | 2 |
| L-glutamate and L-glutamine biosynthesis | 7 | 6 | 2 |
| glutaminyl-tRNAgln biosynthesis via transamidation | 4 | 1 | 1 |
| L-asparagine biosynthesis III (tRNA-dependent) | 4 | 1 | 1 |
| toxoflavin biosynthesis | 7 | 4 | 1 |
| L-citrulline biosynthesis | 8 | 7 | 1 |
| flavin biosynthesis I (bacteria and plants) | 9 | 9 | 1 |
| flavin biosynthesis III (fungi) | 9 | 8 | 1 |
| flavin biosynthesis II (archaea) | 10 | 6 | 1 |
| peptidoglycan recycling II | 10 | 5 | 1 |
| superpathway of L-citrulline metabolism | 12 | 9 | 1 |
| peptidoglycan recycling I | 14 | 11 | 1 |