Experiment set4H39 for Pseudomonas stutzeri RCH2

Compare to:

LB with Sodium Chlorite 0.06 mM

200 most important genes:

  gene name fitness t score description  
Psest_1492 -5.9 -10.6 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_1510 -3.9 -6.0 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2067 -3.6 -2.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2001 -3.4 -4.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2946 -3.4 -7.3 septum site-determining protein MinD compare
Psest_2775 -3.3 -5.0 Glycerol-3-phosphate dehydrogenase compare
Psest_0181 -3.3 -10.1 glycine cleavage system T protein compare
Psest_3296 -3.3 -9.8 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_3306 -3.3 -6.1 conserved hypothetical integral membrane protein compare
Psest_3303 -3.3 -8.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2232 -3.2 -18.0 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_0280 -3.1 -16.7 homoserine O-acetyltransferase compare
Psest_0998 -3.0 -6.4 poly(A) polymerase compare
Psest_0515 -3.0 -4.0 rare lipoprotein A compare
Psest_0516 -2.9 -14.0 D-alanyl-D-alanine carboxypeptidase compare
Psest_0062 -2.9 -10.4 tryptophan synthase, alpha subunit compare
Psest_0958 -2.9 -12.4 Oligoketide cyclase/lipid transport protein compare
Psest_3307 -2.9 -9.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3305 -2.9 -10.4 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0309 -2.9 -2.1 RND family efflux transporter, MFP subunit compare
Psest_2333 -2.8 -2.1 Protein of unknown function (DUF3359). compare
Psest_1472 -2.8 -10.5 Protein of unknown function (DUF3108). compare
Psest_3304 -2.8 -8.1 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0279 -2.8 -8.5 methionine biosynthesis protein MetW compare
Psest_2066 -2.8 -10.8 ABC-type uncharacterized transport system, permease component compare
Psest_1012 -2.8 -7.4 Signal transduction histidine kinase compare
Psest_2104 -2.8 -4.8 IscR-regulated protein YhgI compare
Psest_2968 -2.7 -14.6 flagellar basal-body rod protein FlgB compare
Psest_2141 -2.7 -7.4 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1031 -2.6 -11.2 Uncharacterized protein conserved in bacteria compare
Psest_3637 -2.5 -5.9 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_2712 -2.5 -8.5 Surface lipoprotein compare
Psest_3317 -2.5 -7.9 Phosphotransferase System HPr (HPr) Family compare
Psest_0310 -2.5 -4.0 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2872 -2.5 -3.5 protein RecA compare
Psest_3024 -2.5 -6.2 cytochrome d oxidase, subunit II (cydB) conserved
Psest_3664 -2.4 -2.8 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_3025 -2.4 -13.2 Cytochrome bd-type quinol oxidase, subunit 1 conserved
Psest_1144 -2.4 -6.6 AmpG-related permease compare
Psest_2967 -2.4 -5.1 flagellar basal-body rod protein FlgC compare
Psest_3322 -2.2 -16.5 TIGR02099 family protein compare
Psest_0063 -2.2 -7.6 tryptophan synthase, beta subunit compare
Psest_3862 -2.2 -13.4 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3816 -2.2 -1.5 DNA-directed RNA polymerase, omega subunit compare
Psest_1496 -2.2 -3.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_0533 -2.1 -7.3 Sel1 repeat. compare
Psest_1814 -2.1 -15.3 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0487 -2.1 -6.7 Uncharacterized protein conserved in bacteria compare
Psest_4243 -2.1 -2.5 type VI secretion lipoprotein, VC_A0113 family compare
Psest_1640 -2.1 -8.4 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_2945 -2.0 -3.5 septum site-determining protein MinC compare
Psest_1471 -2.0 -9.5 Predicted membrane protein compare
Psest_3456 -2.0 -1.3 RNA polymerase sigma factor, sigma-70 family compare
Psest_3767 -1.9 -5.0 tyrosine recombinase XerC compare
Psest_3338 -1.9 -2.7 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2578 -1.9 -13.1 O-succinylhomoserine sulfhydrylase compare
Psest_2358 -1.9 -2.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4098 -1.9 -3.6 Superfamily I DNA and RNA helicases compare
Psest_0212 -1.8 -1.2 exodeoxyribonuclease V, gamma subunit compare
Psest_1824 -1.8 -5.1 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3129 -1.8 -2.4 tyrosine recombinase XerD compare
Psest_3496 -1.8 -1.6 Predicted metal-binding protein compare
Psest_4219 -1.8 -2.4 DNA polymerase I compare
Psest_3092 -1.8 -2.6 ribonuclease III, bacterial compare
Psest_4363 -1.8 -9.7 ATPases involved in chromosome partitioning compare
Psest_3810 -1.7 -3.0 orotate phosphoribosyltransferase compare
Psest_0311 -1.7 -4.1 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_2643 -1.7 -2.9 Beta-glucosidase-related glycosidases compare
Psest_2138 -1.7 -6.3 RND family efflux transporter, MFP subunit compare
Psest_1612 -1.7 -5.1 ABC-type multidrug transport system, ATPase component compare
Psest_0993 -1.6 -10.9 Glucose-6-phosphate isomerase compare
Psest_1452 -1.6 -7.8 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_2139 -1.6 -11.3 Cation/multidrug efflux pump compare
Psest_1813 -1.6 -11.0 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3904 -1.6 -0.9 hypothetical protein compare
Psest_4338 -1.6 -6.4 Fe2+-dicitrate sensor, membrane component conserved
Psest_0449 -1.5 -8.8 Glutamine synthetase adenylyltransferase compare
Psest_0691 -1.5 -10.5 ribonuclease R compare
Psest_1516 -1.5 -3.3 Uncharacterized lipoprotein compare
Psest_0116 -1.5 -6.0 Uncharacterized protein conserved in bacteria conserved
Psest_0514 -1.4 -5.0 lytic murein transglycosylase B compare
Psest_1819 -1.4 -12.7 Nucleoside-diphosphate-sugar epimerases compare
Psest_2862 -1.4 -9.0 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_2140 -1.4 -9.7 Cation/multidrug efflux pump compare
Psest_3908 -1.4 -1.1 Cytochrome c553 compare
Psest_3744 -1.4 -6.2 Disulfide bond formation protein DsbB compare
Psest_1822 -1.4 -7.9 Glycosyltransferases involved in cell wall biogenesis compare
Psest_3270 -1.4 -2.4 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2714 -1.4 -2.8 7-cyano-7-deazaguanine reductase compare
Psest_2123 -1.4 -2.2 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3532 -1.4 -6.8 Peptidase propeptide and YPEB domain. compare
Psest_1663 -1.3 -4.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2017 -1.3 -5.8 Predicted acyltransferase compare
Psest_3881 -1.3 -1.6 hypothetical protein compare
Psest_3203 -1.3 -5.7 hypothetical protein compare
Psest_1162 -1.3 -2.5 Spermidine synthase compare
Psest_1614 -1.3 -5.6 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component compare
Psest_1812 -1.3 -8.8 pseudaminic acid CMP-transferase compare
Psest_4211 -1.3 -2.7 conserverd hypothetical protein compare
Psest_2379 -1.3 -8.5 PAS domain S-box compare
Psest_0186 -1.3 -3.2 Protein-disulfide isomerase compare
Psest_3455 -1.3 -1.8 Dihaem cytochrome c. compare
Psest_1870 -1.2 -1.6 Transcriptional regulators compare
Psest_2585 -1.2 -1.7 pseudouridylate synthase I compare
Psest_3027 -1.2 -3.2 AZL_007950 family protein compare
Psest_1295 -1.2 -6.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1613 -1.2 -5.1 hypothetical protein compare
Psest_1660 -1.2 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0417 -1.2 -2.5 Acyl-CoA dehydrogenases compare
Psest_0725 -1.2 -2.9 Negative regulator of beta-lactamase expression compare
Psest_3123 -1.2 -3.8 dihydroorotase, homodimeric type compare
Psest_3339 -1.2 -4.0 Signal transduction histidine kinase compare
Psest_1099 -1.1 -9.2 Type I restriction-modification system methyltransferase subunit compare
Psest_3316 -1.1 -4.9 Predicted P-loop-containing kinase compare
Psest_3960 -1.1 -1.4 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0133 -1.1 -1.5 type VI secretion protein, VC_A0107 family compare
Psest_1242 -1.1 -2.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1643 -1.1 -1.6 hypothetical protein compare
Psest_2083 -1.1 -6.7 Putative sterol carrier protein compare
Psest_4274 -1.1 -3.9 hypothetical protein compare
Psest_1692 -1.1 -7.2 conserved hypothetical protein, YceG family compare
Psest_0843 -1.1 -5.6 hypothetical protein compare
Psest_3453 -1.1 -2.1 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0655 -1.1 -1.7 Chemotaxis signal transduction protein compare
Psest_3860 -1.1 -2.3 Predicted permeases compare
Psest_3228 -1.1 -7.0 Zn-dependent protease with chaperone function compare
Psest_2000 -1.1 -5.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3554 -1.1 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3735 -1.0 -2.6 uncharacterized domain 1 compare
Psest_0064 -1.0 -0.9 Transcriptional regulator compare
Psest_3784 -1.0 -1.5 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2150 -1.0 -2.5 DNA polymerase LigD, polymerase domain compare
Psest_1292 -1.0 -6.3 monothiol glutaredoxin, Grx4 family compare
Psest_3943 -1.0 -2.0 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1818 -1.0 -7.1 GDP-mannose 4,6-dehydratase compare
Psest_3494 -1.0 -1.5 hypothetical protein compare
Psest_3790 -1.0 -5.4 Cytochrome c5 compare
Psest_0257 -1.0 -2.7 Predicted Zn-dependent peptidases compare
Psest_0114 -1.0 -1.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_2971 -1.0 -4.6 flagella basal body P-ring formation protein FlgA compare
Psest_1506 -1.0 -4.3 queuosine biosynthesis protein QueC compare
Psest_1825 -1.0 -7.2 Predicted nucleoside-diphosphate sugar epimerases compare
Psest_4209 -1.0 -1.9 Uncharacterized conserved small protein compare
Psest_3479 -0.9 -1.9 molybdenum cofactor synthesis domain compare
Psest_1048 -0.9 -5.1 Uncharacterized paraquat-inducible protein A compare
Psest_1120 -0.9 -4.1 uracil phosphoribosyltransferase compare
Psest_1098 -0.9 -6.1 Restriction endonuclease S subunits compare
Psest_2976 -0.9 -0.8 hypothetical protein compare
Psest_1122 -0.9 -7.9 putative adhesin (DUF1302) (from data) compare
Psest_0260 -0.9 -1.6 Cell division protein compare
Psest_2424 -0.9 -1.6 K+ transport systems, NAD-binding component compare
Psest_3961 -0.9 -4.5 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Psest_3813 -0.9 -5.2 ribonuclease PH compare
Psest_1259 -0.9 -3.4 23S rRNA m2A2503 methyltransferase compare
Psest_1910 -0.9 -1.8 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_0542 -0.9 -4.0 AMP nucleosidase compare
Psest_1804 -0.9 -3.4 Superfamily II DNA and RNA helicases compare
Psest_3894 -0.9 -2.3 Carbon starvation protein, predicted membrane protein compare
Psest_1050 -0.9 -7.3 Paraquat-inducible protein B compare
Psest_4010 -0.9 -1.7 peroxiredoxin, OsmC subfamily compare
Psest_3044 -0.9 -5.4 deoxycytidine triphosphate deaminase compare
Psest_1700 -0.9 -4.0 Transcriptional regulator compare
Psest_2899 -0.9 -1.9 hypothetical protein compare
Psest_3047 -0.9 -1.4 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0489 -0.9 -2.8 phosphoserine phosphatase SerB compare
Psest_4177 -0.9 -1.9 flagellar biosynthetic protein FliP compare
Psest_2316 -0.9 -6.9 phosphoenolpyruvate synthase compare
Psest_1809 -0.9 -6.2 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_2025 -0.9 -1.3 cold shock domain protein CspD compare
Psest_2532 -0.9 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_0117 -0.9 -3.6 Uncharacterized protein conserved in bacteria (DUF2063). compare
Psest_2718 -0.8 -1.3 hypothetical protein compare
Psest_2383 -0.8 -4.5 Predicted transcriptional regulators compare
Psest_2114 -0.8 -4.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_4100 -0.8 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_3323 -0.8 -2.5 ribonuclease, Rne/Rng family compare
Psest_1535 -0.8 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_1913 -0.8 -2.4 Transcriptional regulator compare
Psest_2229 -0.8 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_0259 -0.8 -1.5 cell division ATP-binding protein FtsE compare
Psest_2944 -0.8 -3.0 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2454 -0.8 -1.7 Rhodanese-related sulfurtransferase compare
Psest_1451 -0.8 -1.5 Uncharacterized ABC-type transport system, permease components compare
Psest_1388 -0.8 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_1079 -0.8 -1.9 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_4106 -0.8 -2.2 formate dehydrogenase, gamma subunit compare
Psest_0660 -0.8 -1.6 Methyl-accepting chemotaxis protein compare
Psest_0385 -0.8 -1.1 Conserved secreted protein compare
Psest_4305 -0.8 -2.0 NAD-dependent aldehyde dehydrogenases compare
Psest_1204 -0.8 -1.7 Transcriptional regulators compare
Psest_2590 -0.8 -1.4 3-isopropylmalate dehydratase, small subunit compare
Psest_3447 -0.8 -0.7 Uncharacterized MobA-related protein compare
Psest_0368 -0.8 -0.9 Transcriptional regulator compare
Psest_0172 -0.8 -4.0 Uncharacterized protein conserved in bacteria compare
Psest_2018 -0.8 -2.8 Uncharacterized conserved protein compare
Psest_2357 -0.8 -1.1 Short-chain dehydrogenases of various substrate specificities compare
Psest_1296 -0.8 -5.0 excinuclease ABC, B subunit compare
Psest_0832 -0.8 -3.0 iron-sulfur cluster repair di-iron protein compare
Psest_0397 -0.7 -4.9 Small-conductance mechanosensitive channel compare
Psest_2581 -0.7 -1.8 Uncharacterized protein conserved in bacteria compare


Specific Phenotypes

For 18 genes in this experiment

For stress Sodium Chlorite in Pseudomonas stutzeri RCH2

For stress Sodium Chlorite across organisms