Experiment set4H39 for Pseudomonas stutzeri RCH2

Compare to:

LB with Sodium Chlorite 0.06 mM

200 most detrimental genes:

  gene name fitness t score description  
Psest_0028 +3.7 14.7 Coproporphyrinogen III oxidase compare
Psest_3697 +2.4 2.2 Outer membrane lipoprotein carrier protein LolA. compare
Psest_1721 +2.3 9.1 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1733 +2.2 11.5 flagellar biosynthetic protein FliQ compare
Psest_1732 +2.2 8.2 flagellar biosynthetic protein FliP compare
Psest_1720 +2.2 17.1 flagellar motor switch protein FliG compare
Psest_1719 +2.2 13.0 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_1731 +2.2 9.4 flagellar biosynthetic protein FliO compare
Psest_1722 +2.2 17.0 flagellar protein export ATPase FliI compare
Psest_1734 +2.1 13.6 flagellar biosynthetic protein FliR compare
Psest_1723 +2.0 14.4 flagellar export protein FliJ compare
Psest_1738 +2.0 10.2 flagellar biosynthetic protein FlhF conserved
Psest_1735 +1.9 14.1 flagellar biosynthetic protein FlhB compare
Psest_3573 +1.9 8.2 dTDP-4-dehydrorhamnose reductase compare
Psest_1729 +1.9 11.5 flagellar motor switch protein FliM compare
Psest_3762 +1.9 9.8 iron donor protein CyaY compare
Psest_2960 +1.9 14.3 flagellar rod assembly protein/muramidase FlgJ compare
Psest_1737 +1.9 12.1 flagellar biosynthesis protein FlhA compare
Psest_0225 +1.7 2.6 Predicted permease, DMT superfamily compare
Psest_1718 +1.7 9.2 flagellar hook-basal body complex protein FliE compare
Psest_2864 +1.6 6.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3575 +1.6 9.8 Arabinose efflux permease conserved
Psest_3377 +1.6 3.1 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3731 +1.6 13.0 exopolyphosphatase compare
Psest_2312 +1.5 10.8 Small-conductance mechanosensitive channel compare
Psest_4003 +1.5 7.5 TIGR00153 family protein compare
Psest_1527 +1.5 12.8 Na+/proline symporter compare
Psest_1215 +1.5 2.7 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_0857 +1.5 0.9 Membrane transporters of cations and cationic drugs compare
Psest_1491 +1.5 3.9 Cold shock proteins compare
Psest_0113 +1.5 4.7 Uncharacterized protein conserved in bacteria compare
Psest_1728 +1.4 5.5 Flagellar basal body-associated protein compare
Psest_0740 +1.4 3.4 Transcriptional regulator compare
Psest_0182 +1.4 9.0 glycine cleavage system H protein compare
Psest_3936 +1.4 3.5 ATP-dependent protease HslVU, peptidase subunit compare
Psest_3828 +1.4 1.2 zinc-binding alcohol dehydrogenase family protein compare
Psest_3178 +1.4 5.1 formyltetrahydrofolate deformylase compare
Psest_4314 +1.4 4.2 ABC-type metal ion transport system, ATPase component compare
Psest_4142 +1.4 1.6 hypothetical protein compare
Psest_0537 +1.3 1.9 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_2965 +1.3 11.8 fagellar hook-basal body proteins compare
Psest_3927 +1.3 6.7 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_3720 +1.3 11.4 penicillin-binding protein, 1A family compare
Psest_2651 +1.3 5.2 DNA topoisomerase I, bacterial compare
Psest_0298 +1.3 8.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2962 +1.3 5.6 Flagellar basal body L-ring protein compare
Psest_4315 +1.3 3.2 ABC-type metal ion transport system, permease component compare
Psest_2950 +1.2 4.8 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Psest_4201 +1.2 2.0 general secretion pathway protein F compare
Psest_1750 +1.2 4.4 Protein of unknown function (DUF2802). compare
Psest_3002 +1.1 1.9 Putative translation initiation inhibitor, yjgF family compare
Psest_1082 +1.1 2.1 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3351 +1.1 6.4 peptide chain release factor 3 compare
Psest_1765 +1.1 6.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1740 +1.1 7.6 RNA polymerase sigma factor, FliA/WhiG family compare
Psest_1749 +1.1 6.7 Chemotaxis signal transduction protein compare
Psest_1905 +1.1 2.4 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_1840 +1.1 9.5 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_4339 +1.1 6.7 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog compare
Psest_3910 +1.1 1.3 Uncharacterized protein conserved in bacteria compare
Psest_0209 +1.0 1.2 membrane protein AbrB duplication compare
Psest_0678 +1.0 2.6 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_3839 +1.0 3.2 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_0646 +1.0 3.1 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Psest_2425 +1.0 4.3 Trk-type K+ transport systems, membrane components compare
Psest_4316 +1.0 3.7 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_3998 +1.0 5.2 glutamate--cysteine ligase compare
Psest_1920 +1.0 1.8 Uncharacterized protein conserved in bacteria compare
Psest_3990 +1.0 5.5 PAP2 superfamily. compare
Psest_1013 +1.0 4.5 phosphoribosylamine--glycine ligase compare
Psest_1617 +1.0 3.3 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_1743 +1.0 6.2 Chemotaxis protein histidine kinase and related kinases compare
Psest_1741 +1.0 2.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0296 +1.0 6.3 glutathione synthetase, prokaryotic compare
Psest_0359 +1.0 2.6 Transcriptional regulators compare
Psest_3113 +1.0 2.9 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2414 +0.9 2.5 TolR protein compare
Psest_0722 +0.9 6.6 Predicted ATPase compare
Psest_4267 +0.9 2.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4298 +0.9 0.7 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3766 +0.9 1.9 Uncharacterized protein conserved in bacteria compare
Psest_3649 +0.9 5.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2579 +0.9 6.1 amidophosphoribosyltransferase compare
Psest_4337 +0.9 8.0 TonB-dependent siderophore receptor compare
Psest_0647 +0.9 4.4 Arabinose efflux permease compare
Psest_2265 +0.9 2.7 Outer membrane protein compare
Psest_2963 +0.9 4.0 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Psest_3565 +0.9 1.6 hypothetical protein compare
Psest_1139 +0.9 4.7 PAS domain S-box compare
Psest_2458 +0.8 2.3 MoxR-like ATPases compare
Psest_0693 +0.8 7.2 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_3995 +0.8 1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0779 +0.8 2.5 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
Psest_3371 +0.8 4.5 type IV pilus modification protein PilV compare
Psest_2762 +0.8 2.4 hypothetical protein compare
Psest_1121 +0.8 5.2 Hypoxanthine-guanine phosphoribosyltransferase compare
Psest_3994 +0.8 4.7 Signal transduction histidine kinase compare
Psest_1249 +0.8 5.3 serine O-acetyltransferase compare
Psest_2810 +0.8 3.9 5'/3'-nucleotidase SurE compare
Psest_1424 +0.8 1.3 Lipoate-protein ligase A compare
Psest_3016 +0.8 6.2 TonB-dependent vitamin B12 receptor compare
Psest_4370 +0.8 2.5 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2134 +0.8 6.8 amino acid carrier protein compare
Psest_3557 +0.8 3.6 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3370 +0.8 5.1 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1879 +0.8 3.1 Trk-type K+ transport systems, membrane components compare
Psest_1888 +0.8 1.3 Sua5/YciO/YrdC/YwlC family protein compare
Psest_4190 +0.8 5.6 Nucleoside-diphosphate-sugar epimerases compare
Psest_1939 +0.8 4.0 Tetratricopeptide repeat. compare
Psest_0845 +0.8 0.6 hypothetical protein compare
Psest_3537 +0.8 3.8 hypothetical protein compare
Psest_3188 +0.7 3.1 hypothetical protein compare
Psest_0297 +0.7 3.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1598 +0.7 3.4 heavy metal response regulator compare
Psest_1179 +0.7 1.6 2-hydroxy-3-oxopropionate reductase compare
Psest_2855 +0.7 1.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3013 +0.7 1.0 cobyrinic acid a,c-diamide synthase compare
Psest_0496 +0.7 5.0 flagellar motor stator protein MotA compare
Psest_1029 +0.7 2.1 Regulator of competence-specific genes compare
Psest_2447 +0.7 0.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0482 +0.7 2.8 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_1882 +0.7 3.8 Signal transduction histidine kinase compare
Psest_1217 +0.7 4.1 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_1167 +0.7 1.2 hypothetical protein compare
Psest_3365 +0.7 2.4 Predicted membrane protein compare
Psest_3419 +0.7 4.1 Predicted transcriptional regulators compare
Psest_0952 +0.7 2.0 Uncharacterized conserved protein compare
Psest_0969 +0.7 1.7 transcription elongation factor GreA compare
Psest_3045 +0.7 2.0 Cold shock proteins compare
Psest_2554 +0.7 5.2 NADH:flavin oxidoreductases, Old Yellow Enzyme family compare
Psest_4197 +0.7 1.5 general secretion pathway protein J compare
Psest_3745 +0.7 2.6 Uncharacterized enzyme of heme biosynthesis compare
Psest_0848 +0.6 2.1 hypothetical protein compare
Psest_3413 +0.6 2.9 hypothetical protein compare
Psest_2961 +0.6 1.4 Flagellar basal-body P-ring protein compare
Psest_0077 +0.6 2.3 luciferase family oxidoreductase, group 1 compare
Psest_0529 +0.6 4.8 Putative Mg2+ and Co2+ transporter CorC compare
Psest_2048 +0.6 1.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1488 +0.6 5.6 outer membrane porin, OprD family. compare
Psest_4103 +0.6 0.9 AraC-type DNA-binding domain-containing proteins compare
Psest_1235 +0.6 3.9 Leucyl aminopeptidase compare
Psest_3031 +0.6 0.9 hypothetical protein compare
Psest_1397 +0.6 1.7 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_1156 +0.6 3.4 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Psest_2671 +0.6 1.4 Transcriptional regulator compare
Psest_1322 +0.6 1.0 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_3185 +0.6 1.4 MoxR-like ATPases compare
Psest_3142 +0.6 5.1 Uncharacterized protein conserved in bacteria compare
Psest_1884 +0.6 2.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3355 +0.6 2.2 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
Psest_1486 +0.6 1.7 hypothetical protein compare
Psest_3115 +0.6 4.2 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1745 +0.6 3.2 Flagellar motor component compare
Psest_1942 +0.6 3.5 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_0697 +0.6 3.5 ribosomal protein L9 compare
Psest_3341 +0.6 5.2 Outer membrane receptor for ferrienterochelin and colicins compare
Psest_1055 +0.6 4.2 Saccharopine dehydrogenase and related proteins compare
Psest_2070 +0.6 4.3 FOG: LysM repeat compare
Psest_1943 +0.6 4.3 MoxR-like ATPases compare
Psest_2421 +0.6 2.3 formate dehydrogenase family accessory protein FdhD compare
Psest_1940 +0.6 1.7 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_3085 +0.6 3.6 methyltransferase, putative compare
Psest_0466 +0.6 2.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2218 +0.6 1.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_0719 +0.6 3.6 Uncharacterized protein conserved in bacteria compare
Psest_3991 +0.6 1.8 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_1957 +0.6 4.3 outer membrane porin, OprD family. compare
Psest_0103 +0.6 1.2 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_2911 +0.6 1.3 Protein of unknown function (DUF2945). compare
Psest_1918 +0.6 2.4 Calcineurin-like phosphoesterase. compare
Psest_1602 +0.5 1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0790 +0.5 1.8 Uncharacterized protein conserved in bacteria compare
Psest_3177 +0.5 1.7 hypothetical protein compare
Psest_2586 +0.5 4.9 FimV N-terminal domain compare
Psest_1466 +0.5 1.6 transcriptional regulator, Spx/MgsR family compare
Psest_4137 +0.5 2.2 Uncharacterized iron-regulated membrane protein compare
Psest_1460 +0.5 2.6 Cytochrome c553 compare
Psest_0445 +0.5 4.2 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_4004 +0.5 1.6 Uncharacterized conserved protein compare
Psest_1161 +0.5 1.6 E3 Ubiquitin ligase. compare
Psest_0086 +0.5 1.1 hypothetical protein compare
Psest_3014 +0.5 0.8 cob(I)alamin adenosyltransferase compare
Psest_2539 +0.5 2.2 adenine phosphoribosyltransferase compare
Psest_0237 +0.5 1.8 intracellular protease, PfpI family compare
Psest_1889 +0.5 3.1 tryptophanyl-tRNA synthetase compare
Psest_4193 +0.5 2.9 Predicted signal transduction protein compare
Psest_2120 +0.5 0.9 Transcriptional regulator compare
Psest_3660 +0.5 3.0 PAS domain S-box compare
Psest_1132 +0.5 2.6 mutator mutT protein compare
Psest_0715 +0.5 4.2 NADH dehydrogenase, FAD-containing subunit compare
Psest_1543 +0.5 2.2 Predicted transcription regulator, contains HTH domain (MarR family) compare
Psest_2988 +0.5 3.0 aspartate kinase, monofunctional class compare
Psest_2939 +0.5 2.5 Predicted membrane protein compare
Psest_2490 +0.5 3.6 succinyl-CoA synthetase, alpha subunit compare
Psest_4163 +0.5 0.6 hypothetical protein compare
Psest_3979 +0.5 2.0 Fructose-2,6-bisphosphatase compare
Psest_2884 +0.5 2.2 HAD-superfamily phosphatase, subfamily IIIC/FkbH-like domain compare
Psest_3174 +0.5 4.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3645 +0.5 3.9 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1136 +0.5 3.3 Prolyl oligopeptidase family. compare


Specific Phenotypes

For 18 genes in this experiment

For stress Sodium Chlorite in Pseudomonas stutzeri RCH2

For stress Sodium Chlorite across organisms