Experiment set4H35 for Pseudomonas stutzeri RCH2

Compare to:

LB with 5-Hydroxymethylfurfural 5 mM

200 most important genes:

  gene name fitness t score description  
Psest_1492 -6.4 -7.6 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3092 -3.6 -2.5 ribonuclease III, bacterial compare
Psest_0062 -3.4 -8.9 tryptophan synthase, alpha subunit compare
Psest_1496 -3.4 -3.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_2945 -3.4 -3.9 septum site-determining protein MinC compare
Psest_0063 -3.3 -5.1 tryptophan synthase, beta subunit compare
Psest_0958 -3.1 -13.6 Oligoketide cyclase/lipid transport protein compare
Psest_2872 -2.8 -4.0 protein RecA compare
Psest_3129 -2.6 -3.1 tyrosine recombinase XerD compare
Psest_2946 -2.5 -7.5 septum site-determining protein MinD compare
Psest_2714 -2.5 -3.6 7-cyano-7-deazaguanine reductase compare
Psest_4219 -2.3 -1.6 DNA polymerase I compare
Psest_0542 -2.2 -6.2 AMP nucleosidase compare
Psest_2104 -2.1 -4.9 IscR-regulated protein YhgI compare
Psest_3767 -2.1 -4.6 tyrosine recombinase XerC compare
Psest_3862 -2.1 -13.2 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3477 -2.1 -3.6 Signal transduction histidine kinase compare
Psest_2066 -2.0 -8.7 ABC-type uncharacterized transport system, permease component compare
Psest_0191 -2.0 -1.5 PAS domain S-box compare
Psest_1704 -1.9 -3.2 Dehydrogenases (flavoproteins) compare
Psest_1031 -1.8 -9.9 Uncharacterized protein conserved in bacteria compare
Psest_3745 -1.8 -4.4 Uncharacterized enzyme of heme biosynthesis compare
Psest_3700 -1.8 -0.7 hypothetical protein compare
Psest_3531 -1.7 -1.5 Peptidase propeptide and YPEB domain. compare
Psest_0498 -1.7 -3.1 ribosome small subunit-dependent GTPase A compare
Psest_2651 -1.7 -4.8 DNA topoisomerase I, bacterial compare
Psest_0309 -1.6 -2.1 RND family efflux transporter, MFP subunit compare
Psest_4191 -1.6 -1.1 Transcriptional regulator compare
Psest_3449 -1.6 -1.3 DJ-1 family protein compare
Psest_1505 -1.6 -2.7 Organic radical activating enzymes compare
Psest_0368 -1.5 -1.9 Transcriptional regulator compare
Psest_0998 -1.5 -4.8 poly(A) polymerase compare
Psest_0842 -1.5 -1.9 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_1506 -1.5 -6.5 queuosine biosynthesis protein QueC compare
Psest_1242 -1.5 -3.0 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2123 -1.5 -2.4 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_0093 -1.5 -1.6 Uncharacterized enzyme of phosphonate metabolism compare
Psest_3816 -1.5 -1.6 DNA-directed RNA polymerase, omega subunit compare
Psest_0515 -1.5 -4.2 rare lipoprotein A compare
Psest_3998 -1.4 -3.9 glutamate--cysteine ligase compare
Psest_2766 -1.4 -1.7 hypothetical protein compare
Psest_3904 -1.4 -0.8 hypothetical protein compare
Psest_1804 -1.4 -5.1 Superfamily II DNA and RNA helicases compare
Psest_2413 -1.4 -1.7 Periplasmic protein TonB, links inner and outer membranes compare
Psest_3647 -1.4 -6.3 Indole-3-glycerol phosphate synthase compare
Psest_0280 -1.4 -9.5 homoserine O-acetyltransferase compare
Psest_4078 -1.4 -2.3 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3230 -1.4 -7.2 Uncharacterized conserved protein compare
Psest_1452 -1.4 -7.3 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0417 -1.4 -2.6 Acyl-CoA dehydrogenases compare
Psest_2150 -1.4 -2.6 DNA polymerase LigD, polymerase domain compare
Psest_0678 -1.3 -2.6 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_3123 -1.3 -4.5 dihydroorotase, homodimeric type compare
Psest_0313 -1.3 -3.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0310 -1.3 -3.0 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0115 -1.3 -1.1 Predicted integral membrane protein compare
Psest_3550 -1.3 -1.6 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_0259 -1.3 -1.9 cell division ATP-binding protein FtsE compare
Psest_3317 -1.3 -5.1 Phosphotransferase System HPr (HPr) Family compare
Psest_3447 -1.3 -1.0 Uncharacterized MobA-related protein compare
Psest_1143 -1.2 -6.7 Small-conductance mechanosensitive channel compare
Psest_2719 -1.2 -4.8 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0212 -1.2 -1.3 exodeoxyribonuclease V, gamma subunit compare
Psest_2357 -1.2 -1.8 Short-chain dehydrogenases of various substrate specificities compare
Psest_1657 -1.2 -3.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0655 -1.2 -1.4 Chemotaxis signal transduction protein compare
Psest_4098 -1.2 -3.0 Superfamily I DNA and RNA helicases compare
Psest_1079 -1.2 -2.7 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_4103 -1.2 -1.2 AraC-type DNA-binding domain-containing proteins compare
Psest_2744 -1.2 -2.6 Uncharacterized conserved protein compare
Psest_2581 -1.2 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_1663 -1.2 -2.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0181 -1.2 -5.8 glycine cleavage system T protein compare
Psest_3494 -1.1 -1.7 hypothetical protein compare
Psest_0398 -1.1 -6.0 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_3840 -1.1 -4.0 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_1296 -1.1 -7.3 excinuclease ABC, B subunit compare
Psest_1053 -1.1 -1.6 hypothetical protein compare
Psest_0311 -1.1 -3.3 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0734 -1.1 -1.8 RND family efflux transporter, MFP subunit compare
Psest_0376 -1.1 -3.1 glucarate dehydratase compare
Psest_2447 -1.1 -1.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2578 -1.1 -8.5 O-succinylhomoserine sulfhydrylase compare
Psest_3698 -1.1 -2.0 Predicted exporter compare
Psest_2944 -1.1 -5.0 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_0133 -1.1 -1.5 type VI secretion protein, VC_A0107 family compare
Psest_0325 -1.1 -8.6 Putative threonine efflux protein compare
Psest_1510 -1.0 -3.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3008 -1.0 -1.5 cobyric acid synthase CobQ compare
Psest_4335 -1.0 -2.8 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2285 -1.0 -4.0 ATP-dependent protease La compare
Psest_0030 -1.0 -1.6 Putative NADH-flavin reductase compare
Psest_1947 -1.0 -2.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1643 -1.0 -1.6 hypothetical protein compare
Psest_3303 -1.0 -4.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3012 -1.0 -1.5 cob(II)yrinic acid a,c-diamide reductase compare
Psest_0028 -1.0 -2.1 Coproporphyrinogen III oxidase compare
Psest_3732 -1.0 -5.1 polyphosphate kinase 1 compare
Psest_3497 -1.0 -2.8 Predicted metalloprotease compare
Psest_0831 -1.0 -1.0 hypothetical protein compare
Psest_0508 -1.0 -4.7 gamma-glutamyl phosphate reductase compare
Psest_0100 -1.0 -1.3 phosphonate ABC transporter, ATP-binding protein compare
Psest_4274 -1.0 -3.5 hypothetical protein compare
Psest_4247 -1.0 -1.6 Serine/threonine protein phosphatase compare
Psest_0227 -1.0 -1.2 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_2643 -1.0 -2.7 Beta-glucosidase-related glycosidases compare
Psest_4304 -1.0 -3.0 Glycosyltransferases, probably involved in cell wall biogenesis compare
Psest_0087 -1.0 -2.2 hypothetical protein compare
Psest_0574 -0.9 -3.3 hypothetical protein compare
Psest_3911 -0.9 -2.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1295 -0.9 -5.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0175 -0.9 -5.0 Xaa-Pro aminopeptidase compare
Psest_2667 -0.9 -2.0 Uncharacterized protein involved in propionate catabolism compare
Psest_0387 -0.9 -5.2 Membrane-bound serine protease (ClpP class) compare
Psest_3884 -0.9 -0.6 Signal transduction histidine kinase compare
Psest_0355 -0.9 -1.5 Glycine cleavage system regulatory protein compare
Psest_2348 -0.9 -2.4 urea carboxylase-associated protein 2 compare
Psest_0660 -0.9 -1.5 Methyl-accepting chemotaxis protein compare
Psest_3556 -0.9 -2.6 2'-5' RNA ligase compare
Psest_0113 -0.9 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1388 -0.9 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3908 -0.9 -0.8 Cytochrome c553 compare
Psest_2584 -0.9 -3.5 Phosphoribosylanthranilate isomerase compare
Psest_3554 -0.9 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0389 -0.9 -1.4 hypothetical protein compare
Psest_2232 -0.9 -6.1 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3881 -0.9 -1.1 hypothetical protein compare
Psest_4003 -0.9 -3.0 TIGR00153 family protein compare
Psest_1651 -0.8 -2.8 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_3790 -0.8 -4.5 Cytochrome c5 compare
Psest_3894 -0.8 -2.0 Carbon starvation protein, predicted membrane protein compare
Psest_3823 -0.8 -1.8 hypothetical protein compare
Psest_1909 -0.8 -2.4 Phosphohistidine phosphatase SixA compare
Psest_2446 -0.8 -1.4 acetyl-CoA acetyltransferases compare
Psest_0031 -0.8 -0.8 Uncharacterized conserved protein compare
Psest_0279 -0.8 -4.0 methionine biosynthesis protein MetW compare
Psest_1805 -0.8 -2.9 integration host factor, beta subunit compare
Psest_2712 -0.8 -4.3 Surface lipoprotein compare
Psest_0632 -0.8 -1.6 hypothetical protein compare
Psest_1056 -0.8 -1.7 2-isopropylmalate synthase, bacterial type compare
Psest_4256 -0.8 -1.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0161 -0.8 -2.1 Membrane-bound metallopeptidase compare
Psest_2460 -0.8 -1.5 hypothetical protein compare
Psest_2410 -0.8 -3.6 Superfamily I DNA and RNA helicases compare
Psest_0872 -0.8 -1.4 Helix-turn-helix. compare
Psest_1424 -0.8 -1.0 Lipoate-protein ligase A compare
Psest_2646 -0.8 -1.3 SOS regulatory protein LexA compare
Psest_3896 -0.8 -1.0 arsenite-activated ATPase ArsA compare
Psest_0852 -0.8 -2.3 glucose-6-phosphate 1-dehydrogenase compare
Psest_2630 -0.8 -1.8 hypothetical protein compare
Psest_0489 -0.8 -2.7 phosphoserine phosphatase SerB compare
Psest_2726 -0.8 -2.0 Rhodanese-related sulfurtransferase compare
Psest_1660 -0.8 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0862 -0.8 -1.5 Glycosidases compare
Psest_0844 -0.8 -2.1 High-affinity Fe2+/Pb2+ permease compare
Psest_2018 -0.8 -2.2 Uncharacterized conserved protein compare
Psest_0846 -0.8 -1.7 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_0558 -0.8 -0.7 urease, beta subunit compare
Psest_0663 -0.8 -2.6 PAS fold. compare
Psest_1525 -0.8 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_1103 -0.7 -2.6 GTP-binding protein YchF compare
Psest_3694 -0.7 -2.2 Predicted acyltransferase compare
Psest_4209 -0.7 -1.2 Uncharacterized conserved small protein compare
Psest_3887 -0.7 -2.8 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit compare
Psest_3100 -0.7 -6.2 RNA polymerase sigma factor RpoE compare
Psest_1916 -0.7 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_0652 -0.7 -1.7 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_1935 -0.7 -4.0 hypothetical protein compare
Psest_1999 -0.7 -0.8 pseudouridine synthase compare
Psest_3480 -0.7 -1.0 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3247 -0.7 -2.0 Uncharacterized membrane protein compare
Psest_2358 -0.7 -1.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0036 -0.7 -2.5 Predicted membrane protein compare
Psest_1412 -0.7 -2.6 Protein of unknown function (DUF3047). compare
Psest_3973 -0.7 -1.6 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_3118 -0.7 -5.5 endonuclease III compare
Psest_0858 -0.7 -2.5 Maltose operon periplasmic protein precursor (MalM). compare
Psest_2669 -0.7 -3.3 Acyl-CoA dehydrogenases compare
Psest_1635 -0.7 -5.6 Signal transduction histidine kinase compare
Psest_3467 -0.7 -2.7 PAP2 (acid phosphatase) superfamily protein compare
Psest_2628 -0.7 -1.7 Flp pilus assembly protein, protease CpaA compare
Psest_3883 -0.7 -2.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1628 -0.7 -2.8 hypothetical protein compare
Psest_2988 -0.7 -3.8 aspartate kinase, monofunctional class compare
Psest_3470 -0.7 -2.2 Uncharacterized conserved protein compare
Psest_3559 -0.7 -3.2 thioredoxin compare
Psest_4222 -0.7 -4.8 Predicted Rossmann fold nucleotide-binding protein compare
Psest_0364 -0.7 -2.6 Gluconolactonase compare
Psest_0864 -0.7 -3.8 maltose ABC transporter, permease component 1 (MalF) (from data) compare
Psest_4302 -0.7 -2.0 hypothetical protein compare
Psest_2631 -0.7 -3.1 AraC-type DNA-binding domain-containing proteins compare
Psest_0861 -0.7 -1.7 hypothetical protein compare
Psest_3305 -0.7 -3.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3475 -0.7 -2.4 hypothetical protein compare
Psest_3576 -0.7 -5.9 excinuclease ABC, A subunit compare
Psest_2527 -0.7 -4.9 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_2017 -0.7 -2.4 Predicted acyltransferase compare
Psest_3893 -0.7 -1.4 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1655 -0.7 -3.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0385 -0.7 -1.0 Conserved secreted protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress 5-Hydroxymethylfurfural across organisms