Experiment set4H32 for Pseudomonas stutzeri RCH2

Compare to:

LB with Nalidixic acid sodium salt 0.001 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_1492 -6.4 -7.6 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3307 -4.8 -6.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3305 -4.5 -8.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3303 -4.5 -6.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2872 -4.4 -3.0 protein RecA compare
Psest_2712 -4.3 -8.3 Surface lipoprotein compare
Psest_0309 -4.1 -2.8 RND family efflux transporter, MFP subunit compare
Psest_0466 -4.0 -7.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1496 -4.0 -2.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_3306 -3.7 -6.1 conserved hypothetical integral membrane protein compare
Psest_3129 -3.5 -3.3 tyrosine recombinase XerD compare
Psest_0310 -3.4 -4.0 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2285 -3.4 -6.7 ATP-dependent protease La compare
Psest_0062 -3.4 -11.8 tryptophan synthase, alpha subunit compare
Psest_3884 -3.3 -1.3 Signal transduction histidine kinase compare
Psest_3883 -3.3 -7.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2946 -3.2 -7.3 septum site-determining protein MinD compare
Psest_0063 -3.2 -8.4 tryptophan synthase, beta subunit compare
Psest_3767 -3.2 -6.3 tyrosine recombinase XerC compare
Psest_3304 -3.1 -6.1 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3092 -3.0 -2.9 ribonuclease III, bacterial compare
Psest_2945 -3.0 -3.5 septum site-determining protein MinC compare
Psest_3896 -2.9 -1.9 arsenite-activated ATPase ArsA compare
Psest_2025 -2.8 -2.3 cold shock domain protein CspD compare
Psest_4219 -2.8 -2.7 DNA polymerase I compare
Psest_3647 -2.5 -7.7 Indole-3-glycerol phosphate synthase compare
Psest_0498 -2.4 -3.8 ribosome small subunit-dependent GTPase A compare
Psest_3766 -2.4 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_2358 -2.4 -2.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0212 -2.2 -1.5 exodeoxyribonuclease V, gamma subunit compare
Psest_2066 -2.2 -5.8 ABC-type uncharacterized transport system, permease component compare
Psest_0311 -2.2 -4.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1143 -2.2 -6.9 Small-conductance mechanosensitive channel compare
Psest_3990 -2.1 -11.0 PAP2 superfamily. compare
Psest_1472 -2.1 -8.7 Protein of unknown function (DUF3108). compare
Psest_2232 -2.1 -12.2 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1525 -2.0 -6.0 Uncharacterized protein conserved in bacteria compare
Psest_1284 -1.9 -4.4 exodeoxyribonuclease VII, large subunit compare
Psest_4191 -1.9 -2.7 Transcriptional regulator compare
Psest_3401 -1.9 -10.4 DNA repair protein RadA conserved
Psest_1532 -1.8 -5.2 DNA recombination-dependent growth factor C compare
Psest_0958 -1.8 -9.3 Oligoketide cyclase/lipid transport protein compare
Psest_1486 -1.8 -4.0 hypothetical protein compare
Psest_2333 -1.8 -1.7 Protein of unknown function (DUF3359). compare
Psest_0193 -1.7 -1.3 conserved hypothetical protein compare
Psest_3816 -1.7 -1.5 DNA-directed RNA polymerase, omega subunit compare
Psest_0259 -1.7 -2.7 cell division ATP-binding protein FtsE compare
Psest_4363 -1.7 -10.2 ATPases involved in chromosome partitioning compare
Psest_2944 -1.7 -5.5 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_3399 -1.7 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_0962 -1.6 -9.9 DNA repair protein RecN conserved
Psest_1012 -1.5 -5.9 Signal transduction histidine kinase compare
Psest_0280 -1.5 -10.8 homoserine O-acetyltransferase compare
Psest_3882 -1.5 -7.8 Opacity protein and related surface antigens compare
Psest_0542 -1.5 -6.1 AMP nucleosidase compare
Psest_3228 -1.5 -8.5 Zn-dependent protease with chaperone function compare
Psest_1510 -1.5 -5.3 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3400 -1.5 -2.9 Copper resistance protein D. compare
Psest_1242 -1.5 -3.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0515 -1.5 -3.8 rare lipoprotein A compare
Psest_1498 -1.5 -2.4 tol-pal system-associated acyl-CoA thioesterase compare
Psest_0719 -1.4 -7.1 Uncharacterized protein conserved in bacteria compare
Psest_0257 -1.4 -3.3 Predicted Zn-dependent peptidases compare
Psest_0872 -1.4 -2.2 Helix-turn-helix. compare
Psest_3732 -1.4 -7.7 polyphosphate kinase 1 compare
Psest_3648 -1.4 -7.1 anthranilate phosphoribosyltransferase compare
Psest_2581 -1.4 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3047 -1.4 -2.0 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0445 -1.3 -9.8 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0442 -1.3 -5.4 ATPases of the AAA+ class compare
Psest_0313 -1.3 -4.2 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0066 -1.3 -2.0 Protein of unknown function (DUF3060). compare
Psest_0097 -1.3 -1.1 phosphonates metabolism transcriptional regulator PhnF compare
Psest_2446 -1.3 -1.9 acetyl-CoA acetyltransferases compare
Psest_1031 -1.3 -7.6 Uncharacterized protein conserved in bacteria compare
Psest_4098 -1.3 -3.6 Superfamily I DNA and RNA helicases compare
Psest_2584 -1.2 -4.3 Phosphoribosylanthranilate isomerase compare
Psest_2714 -1.2 -2.3 7-cyano-7-deazaguanine reductase compare
Psest_3650 -1.2 -8.5 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0457 -1.2 -3.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0737 -1.2 -0.8 Cu(I)-responsive transcriptional regulator compare
Psest_4209 -1.2 -2.4 Uncharacterized conserved small protein compare
Psest_1505 -1.2 -2.4 Organic radical activating enzymes compare
Psest_0218 -1.2 -2.6 Acyl-CoA hydrolase compare
Psest_4305 -1.2 -3.3 NAD-dependent aldehyde dehydrogenases compare
Psest_1765 -1.2 -5.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2933 -1.2 -8.0 Signal transduction histidine kinase compare
Psest_1506 -1.2 -4.7 queuosine biosynthesis protein QueC compare
Psest_2997 -1.1 -8.0 Long-chain fatty acid transport protein compare
Psest_1509 -1.1 -6.4 quinolinate synthetase complex, A subunit compare
Psest_2316 -1.1 -8.9 phosphoenolpyruvate synthase compare
Psest_1457 -1.1 -2.0 FOG: Ankyrin repeat compare
Psest_4078 -1.1 -3.4 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1724 -1.1 -2.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2810 -1.1 -4.7 5'/3'-nucleotidase SurE compare
Psest_1663 -1.1 -2.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0186 -1.1 -3.3 Protein-disulfide isomerase compare
Psest_1843 -1.1 -2.5 Uncharacterized Fe-S protein compare
Psest_3231 -1.1 -3.2 hypothetical protein compare
Psest_0312 -1.1 -4.1 Superfamily II DNA and RNA helicases compare
Psest_0359 -1.0 -1.6 Transcriptional regulators compare
Psest_3649 -1.0 -6.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3123 -1.0 -2.6 dihydroorotase, homodimeric type compare
Psest_3626 -1.0 -4.3 hypothetical protein compare
Psest_1163 -1.0 -3.1 diguanylate cyclase (GGDEF) domain compare
Psest_3998 -1.0 -3.8 glutamate--cysteine ligase compare
Psest_0004 -1.0 -6.6 recF protein compare
Psest_1241 -1.0 -4.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_4222 -1.0 -7.4 Predicted Rossmann fold nucleotide-binding protein compare
Psest_0853 -1.0 -1.7 6-phosphogluconolactonase compare
Psest_1947 -1.0 -2.2 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1516 -1.0 -2.7 Uncharacterized lipoprotein compare
Psest_0078 -1.0 -0.9 hypothetical protein compare
Psest_1295 -0.9 -5.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3720 -0.9 -7.6 penicillin-binding protein, 1A family compare
Psest_0100 -0.9 -1.9 phosphonate ABC transporter, ATP-binding protein compare
Psest_4211 -0.9 -2.4 conserverd hypothetical protein compare
Psest_3576 -0.9 -7.8 excinuclease ABC, A subunit compare
Psest_1871 -0.9 -4.5 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_0846 -0.9 -1.7 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1488 -0.9 -7.6 outer membrane porin, OprD family. compare
Psest_3338 -0.9 -1.6 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2718 -0.9 -1.8 hypothetical protein compare
Psest_0843 -0.9 -4.9 hypothetical protein compare
Psest_4303 -0.9 -0.8 HEAT repeat. compare
Psest_2847 -0.9 -3.5 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_0113 -0.9 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_2809 -0.8 -2.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2756 -0.8 -0.9 hypothetical protein compare
Psest_2304 -0.8 -1.5 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_4044 -0.8 -4.8 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1681 -0.8 -3.4 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_1938 -0.8 -2.9 hypothetical protein compare
Psest_1480 -0.8 -2.2 arsenate reductase (glutaredoxin) compare
Psest_4003 -0.8 -3.4 TIGR00153 family protein compare
Psest_1679 -0.8 -1.4 ribonuclease, Rne/Rng family compare
Psest_0844 -0.8 -1.8 High-affinity Fe2+/Pb2+ permease compare
Psest_1466 -0.8 -2.4 transcriptional regulator, Spx/MgsR family compare
Psest_0697 -0.8 -2.1 ribosomal protein L9 compare
Psest_0601 -0.8 -1.7 hypothetical protein compare
Psest_1183 -0.8 -1.6 hydroxyisourate hydrolase compare
Psest_4184 -0.8 -2.8 hypothetical protein compare
Psest_3409 -0.8 -2.5 hypothetical protein compare
Psest_3862 -0.8 -5.8 phosphoenolpyruvate-protein phosphotransferase compare
Psest_1473 -0.8 -4.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3536 -0.8 -1.5 hypothetical protein compare
Psest_0393 -0.8 -3.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2561 -0.8 -1.1 hypothetical protein compare
Psest_1313 -0.8 -1.5 Uncharacterized conserved small protein compare
Psest_0227 -0.8 -1.3 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_0511 -0.8 -1.3 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_2566 -0.8 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_0855 -0.8 -2.0 NAD-dependent aldehyde dehydrogenases compare
Psest_3173 -0.8 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_0508 -0.8 -3.9 gamma-glutamyl phosphate reductase compare
Psest_0281 -0.7 -4.4 Dynamin family. compare
Psest_0146 -0.7 -3.5 Uncharacterized protein involved in outer membrane biogenesis compare
Psest_0459 -0.7 -5.1 Predicted carbamoyl transferase, NodU family compare
Psest_1217 -0.7 -4.3 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_1535 -0.7 -3.1 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_0613 -0.7 -4.2 hypothetical protein compare
Psest_2067 -0.7 -1.2 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1065 -0.7 -1.4 hypothetical protein compare
Psest_2846 -0.7 -3.3 monovalent cation/proton antiporter, MnhG/PhaG subunit compare
Psest_3459 -0.7 -1.1 hypothetical protein compare
Psest_2104 -0.7 -2.1 IscR-regulated protein YhgI compare
Psest_3904 -0.7 -0.6 hypothetical protein compare
Psest_0099 -0.7 -2.9 phosphonate ABC transporter, periplasmic phosphonate binding protein compare
Psest_4010 -0.7 -1.2 peroxiredoxin, OsmC subfamily compare
Psest_2981 -0.7 -2.0 sodium pump decarboxylases, gamma subunit compare
Psest_2637 -0.7 -1.3 putative methyltransferase, YaeB/AF_0241 family compare
Psest_1462 -0.7 -3.1 3-oxoacyl-[acyl-carrier-protein] synthase III compare
Psest_3478 -0.7 -0.9 Cytochrome B561 compare
Psest_3384 -0.7 -4.4 glutamate 5-kinase compare
Psest_1058 -0.7 -1.7 ribosomal-protein-alanine acetyltransferase compare
Psest_3176 -0.7 -3.8 Predicted ATPase compare
Psest_2020 -0.7 -2.8 Uncharacterized protein involved in purine metabolism compare
Psest_0656 -0.7 -3.0 Methyl-accepting chemotaxis protein compare
Psest_2545 -0.7 -2.4 recombination protein RecR compare
Psest_2334 -0.7 -5.2 Uncharacterized protein conserved in bacteria compare
Psest_4124 -0.7 -2.7 hypothetical protein compare
Psest_0098 -0.7 -2.3 phosphonate ABC transporter, permease protein PhnE compare
Psest_0691 -0.7 -5.2 ribonuclease R compare
Psest_1447 -0.7 -2.0 Putative threonine efflux protein compare
Psest_0929 -0.7 -3.9 ABC-type proline/glycine betaine transport systems, periplasmic components compare
Psest_2634 -0.7 -2.4 glycine betaine aldehyde dehydrogenase compare
Psest_2764 -0.7 -0.8 hypothetical protein compare
Psest_1504 -0.7 -3.0 tol-pal system protein YbgF compare
Psest_2977 -0.7 -2.9 hypothetical protein compare
Psest_2133 -0.7 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_0516 -0.7 -4.5 D-alanyl-D-alanine carboxypeptidase compare
Psest_0133 -0.7 -1.4 type VI secretion protein, VC_A0107 family compare
Psest_0279 -0.7 -3.2 methionine biosynthesis protein MetW compare
Psest_0326 -0.7 -4.8 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2937 -0.7 -2.8 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_4097 -0.6 -4.3 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0243 -0.6 -0.7 hypothetical protein compare
Psest_3840 -0.6 -2.4 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_2122 -0.6 -0.5 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0275 -0.6 -2.7 Protein of unknown function (DUF3392). compare


Specific Phenotypes

For 6 genes in this experiment

For stress Nalidixic acid sodium salt in Pseudomonas stutzeri RCH2

For stress Nalidixic acid sodium salt across organisms