Experiment set4H3 for Pseudomonas stutzeri RCH2

Compare to:

LB with Fusidic acid sodium salt 0.016 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_3228 -5.2 -11.6 Zn-dependent protease with chaperone function compare
Psest_1496 -5.2 -2.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_1492 -4.7 -6.5 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0309 -4.4 -1.9 RND family efflux transporter, MFP subunit compare
Psest_0697 -4.2 -6.4 ribosomal protein L9 compare
Psest_1510 -4.2 -4.0 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0259 -4.0 -1.5 cell division ATP-binding protein FtsE compare
Psest_4078 -4.0 -3.1 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0161 -3.9 -4.1 Membrane-bound metallopeptidase compare
Psest_2946 -3.8 -5.1 septum site-determining protein MinD compare
Psest_2712 -3.6 -6.3 Surface lipoprotein compare
Psest_3304 -3.6 -7.5 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3307 -3.5 -10.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3305 -3.4 -10.4 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2714 -3.4 -2.3 7-cyano-7-deazaguanine reductase compare
Psest_4219 -3.3 -3.2 DNA polymerase I compare
Psest_3306 -3.2 -6.3 conserved hypothetical integral membrane protein compare
Psest_3303 -3.2 -5.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1724 -3.2 -4.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2285 -3.2 -5.3 ATP-dependent protease La compare
Psest_0498 -3.2 -1.6 ribosome small subunit-dependent GTPase A compare
Psest_0193 -3.0 -1.0 conserved hypothetical protein compare
Psest_2945 -3.0 -2.8 septum site-determining protein MinC compare
Psest_1242 -2.9 -3.9 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2581 -2.8 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_0311 -2.8 -4.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0691 -2.8 -13.3 ribonuclease R compare
Psest_0063 -2.8 -10.2 tryptophan synthase, beta subunit compare
Psest_0062 -2.8 -11.3 tryptophan synthase, alpha subunit compare
Psest_2872 -2.7 -2.3 protein RecA compare
Psest_0515 -2.7 -5.6 rare lipoprotein A compare
Psest_1871 -2.7 -7.0 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_0310 -2.6 -3.9 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2025 -2.6 -1.3 cold shock domain protein CspD compare
Psest_4191 -2.6 -2.5 Transcriptional regulator compare
Psest_3732 -2.5 -9.8 polyphosphate kinase 1 compare
Psest_3092 -2.5 -2.3 ribonuclease III, bacterial compare
Psest_3626 -2.5 -8.1 hypothetical protein compare
Psest_0181 -2.5 -8.5 glycine cleavage system T protein compare
Psest_0846 -2.5 -4.3 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1765 -2.5 -7.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0445 -2.4 -13.0 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1999 -2.3 -1.6 pseudouridine synthase compare
Psest_2997 -2.3 -11.6 Long-chain fatty acid transport protein compare
Psest_2848 -2.2 -3.3 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_0393 -2.2 -5.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0280 -2.2 -12.5 homoserine O-acetyltransferase compare
Psest_1567 -2.2 -3.2 Transcriptional regulator compare
Psest_0845 -2.2 -0.8 hypothetical protein compare
Psest_2764 -2.2 -1.1 hypothetical protein compare
Psest_0257 -2.2 -4.2 Predicted Zn-dependent peptidases compare
Psest_1241 -2.2 -6.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_0021 -2.1 -4.7 ribosomal RNA small subunit methyltransferase RsmB compare
Psest_0172 -2.1 -7.2 Uncharacterized protein conserved in bacteria compare
Psest_1491 -2.1 -2.6 Cold shock proteins compare
Psest_1486 -2.1 -4.2 hypothetical protein compare
Psest_0998 -2.0 -2.8 poly(A) polymerase compare
Psest_1058 -2.0 -2.3 ribosomal-protein-alanine acetyltransferase compare
Psest_1103 -2.0 -2.4 GTP-binding protein YchF compare
Psest_3767 -2.0 -5.2 tyrosine recombinase XerC compare
Psest_2847 -1.9 -4.4 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_1447 -1.9 -4.2 Putative threonine efflux protein compare
Psest_3537 -1.9 -5.1 hypothetical protein compare
Psest_3795 -1.9 -9.2 Glycine/D-amino acid oxidases (deaminating) compare
Psest_3998 -1.9 -6.1 glutamate--cysteine ligase compare
Psest_3391 -1.8 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_0542 -1.8 -7.1 AMP nucleosidase compare
Psest_0489 -1.8 -3.5 phosphoserine phosphatase SerB compare
Psest_0218 -1.8 -2.6 Acyl-CoA hydrolase compare
Psest_1506 -1.8 -4.9 queuosine biosynthesis protein QueC compare
Psest_1163 -1.8 -4.8 diguanylate cyclase (GGDEF) domain compare
Psest_3884 -1.8 -0.7 Signal transduction histidine kinase compare
Psest_0867 -1.8 -1.2 hypothetical protein compare
Psest_4345 -1.8 -8.5 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3155 -1.8 -4.4 hypothetical protein compare
Psest_0831 -1.8 -1.0 hypothetical protein compare
Psest_2339 -1.8 -5.9 transcription elongation factor GreB compare
Psest_0440 -1.8 -3.8 hypothetical protein compare
Psest_0442 -1.7 -6.5 ATPases of the AAA+ class compare
Psest_3756 -1.7 -2.4 hypothetical protein compare
Psest_2240 -1.7 -2.0 hypothetical protein compare
Psest_2768 -1.7 -2.0 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_1143 -1.7 -5.2 Small-conductance mechanosensitive channel compare
Psest_1505 -1.7 -1.2 Organic radical activating enzymes compare
Psest_2293 -1.7 -1.5 hypothetical protein compare
Psest_3862 -1.7 -11.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_1366 -1.6 -1.1 hypothetical protein compare
Psest_3236 -1.6 -4.1 hypothetical protein compare
Psest_1472 -1.6 -6.0 Protein of unknown function (DUF3108). compare
Psest_2981 -1.6 -2.4 sodium pump decarboxylases, gamma subunit compare
Psest_3118 -1.6 -6.0 endonuclease III compare
Psest_1975 -1.6 -6.4 Predicted transcriptional regulators compare
Psest_0279 -1.5 -5.3 methionine biosynthesis protein MetW compare
Psest_3396 -1.5 -9.0 Predicted ATP-dependent protease compare
Psest_3816 -1.5 -0.9 DNA-directed RNA polymerase, omega subunit compare
Psest_2933 -1.5 -7.3 Signal transduction histidine kinase compare
Psest_1065 -1.5 -1.1 hypothetical protein compare
Psest_0844 -1.5 -4.3 High-affinity Fe2+/Pb2+ permease compare
Psest_2590 -1.5 -1.1 3-isopropylmalate dehydratase, small subunit compare
Psest_1339 -1.5 -7.2 ATP-dependent helicase HrpA conserved
Psest_1542 -1.5 -3.1 Uncharacterized proteins, homologs of lactam utilization protein B compare
Psest_1296 -1.4 -7.4 excinuclease ABC, B subunit compare
Psest_1405 -1.4 -6.4 hypothetical protein compare
Psest_0575 -1.4 -0.8 HrpA-like helicases compare
Psest_3576 -1.4 -10.5 excinuclease ABC, A subunit compare
Psest_3720 -1.4 -9.8 penicillin-binding protein, 1A family compare
Psest_1750 -1.4 -2.4 Protein of unknown function (DUF2802). compare
Psest_2139 -1.4 -8.5 Cation/multidrug efflux pump compare
Psest_2730 -1.4 -3.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2018 -1.4 -3.1 Uncharacterized conserved protein compare
Psest_3810 -1.4 -2.8 orotate phosphoribosyltransferase compare
Psest_2578 -1.4 -7.2 O-succinylhomoserine sulfhydrylase compare
Psest_2308 -1.4 -1.1 Predicted Fe-S protein compare
Psest_4252 -1.4 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_2446 -1.4 -1.4 acetyl-CoA acetyltransferases compare
Psest_1466 -1.4 -2.9 transcriptional regulator, Spx/MgsR family compare
Psest_1729 -1.3 -3.5 flagellar motor switch protein FliM compare
Psest_3270 -1.3 -1.6 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_4290 -1.3 -4.6 N-carbamoylputrescine amidase compare
Psest_0066 -1.3 -1.1 Protein of unknown function (DUF3060). compare
Psest_3414 -1.3 -5.0 hypothetical protein compare
Psest_3177 -1.3 -1.9 hypothetical protein compare
Psest_1161 -1.3 -1.8 E3 Ubiquitin ligase. compare
Psest_0326 -1.3 -7.8 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0872 -1.3 -0.9 Helix-turn-helix. compare
Psest_3207 -1.3 -3.8 HopJ type III effector protein. compare
Psest_1167 -1.3 -0.8 hypothetical protein compare
Psest_0662 -1.3 -1.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4124 -1.3 -2.6 hypothetical protein compare
Psest_1743 -1.3 -4.7 Chemotaxis protein histidine kinase and related kinases compare
Psest_2138 -1.3 -2.9 RND family efflux transporter, MFP subunit compare
Psest_0168 -1.3 -3.0 Uncharacterized conserved protein compare
Psest_3173 -1.3 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_3645 -1.3 -5.8 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0297 -1.3 -3.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3721 -1.3 -4.5 Malic enzyme compare
Psest_2645 -1.2 -5.4 Transcriptional regulator compare
Psest_3090 -1.2 -4.9 DNA repair protein RecO compare
Psest_3002 -1.2 -1.1 Putative translation initiation inhibitor, yjgF family compare
Psest_3429 -1.2 -5.2 hypothetical protein compare
Psest_2863 -1.2 -4.9 Transcriptional regulator compare
Psest_0589 -1.2 -7.6 Uncharacterized protein conserved in bacteria compare
Psest_2585 -1.2 -1.1 pseudouridylate synthase I compare
Psest_0120 -1.2 -3.8 hypothetical protein compare
Psest_3413 -1.2 -1.8 hypothetical protein compare
Psest_1718 -1.2 -2.8 flagellar hook-basal body complex protein FliE compare
Psest_4097 -1.2 -7.1 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0057 -1.2 -3.5 Predicted transcriptional regulators compare
Psest_3777 -1.2 -1.8 diguanylate cyclase (GGDEF) domain compare
Psest_0485 -1.2 -2.2 clan AA aspartic protease, TIGR02281 family compare
Psest_3684 -1.2 -5.0 Di- and tricarboxylate transporters compare
Psest_1679 -1.2 -1.1 ribonuclease, Rne/Rng family compare
Psest_4123 -1.2 -4.1 Site-specific recombinase XerD compare
Psest_0584 -1.2 -2.6 hypothetical protein compare
Psest_2775 -1.1 -2.9 Glycerol-3-phosphate dehydrogenase compare
Psest_1749 -1.1 -3.5 Chemotaxis signal transduction protein compare
Psest_0296 -1.1 -4.9 glutathione synthetase, prokaryotic compare
Psest_1700 -1.1 -2.8 Transcriptional regulator compare
Psest_0709 -1.1 -5.6 pseudouridine synthase, RluA family compare
Psest_0902 -1.1 -3.3 Predicted transcriptional regulators compare
Psest_4211 -1.1 -2.8 conserverd hypothetical protein compare
Psest_1436 -1.1 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_1617 -1.1 -1.7 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_3850 -1.1 -0.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0367 -1.1 -1.1 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_4003 -1.1 -3.1 TIGR00153 family protein compare
Psest_2333 -1.1 -0.8 Protein of unknown function (DUF3359). compare
Psest_1013 -1.1 -2.8 phosphoribosylamine--glycine ligase compare
Psest_4080 -1.1 -3.8 Carbonic anhydrase compare
Psest_1179 -1.1 -1.0 2-hydroxy-3-oxopropionate reductase compare
Psest_4126 -1.1 -1.6 Predicted peroxiredoxins compare
Psest_2132 -1.0 -6.4 Outer membrane protein compare
Psest_3129 -1.0 -1.1 tyrosine recombinase XerD compare
Psest_0276 -1.0 -2.7 putative oxygen-independent coproporphyrinogen III oxidase compare
Psest_0883 -1.0 -4.5 hypothetical protein compare
Psest_2648 -1.0 -1.7 hypothetical protein compare
Psest_1056 -1.0 -1.5 2-isopropylmalate synthase, bacterial type compare
Psest_2771 -1.0 -1.9 Predicted membrane protein compare
Psest_3712 -1.0 -5.0 Type II secretory pathway, component ExeA (predicted ATPase) compare
Psest_1462 -1.0 -3.2 3-oxoacyl-[acyl-carrier-protein] synthase III compare
Psest_0186 -1.0 -3.1 Protein-disulfide isomerase compare
Psest_1281 -1.0 -4.4 Small-conductance mechanosensitive channel compare
Psest_1452 -1.0 -5.8 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0613 -1.0 -4.8 hypothetical protein compare
Psest_1525 -1.0 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_2923 -1.0 -0.9 hypothetical protein compare
Psest_0884 -1.0 -4.7 Toxin with endonuclease activity YhaV. compare
Psest_2238 -1.0 -1.8 hypothetical protein compare
Psest_1372 -1.0 -2.7 Methyl-accepting chemotaxis protein compare
Psest_4070 -1.0 -5.2 PAS domain S-box compare
Psest_4250 -1.0 -4.9 hypothetical protein compare
Psest_0790 -1.0 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_1098 -1.0 -4.8 Restriction endonuclease S subunits compare
Psest_1285 -1.0 -3.1 hypothetical protein compare
Psest_3502 -0.9 -1.3 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_3158 -0.9 -3.3 hypothetical protein compare
Psest_1120 -0.9 -3.2 uracil phosphoribosyltransferase compare
Psest_0212 -0.9 -0.9 exodeoxyribonuclease V, gamma subunit compare
Psest_1488 -0.9 -7.1 outer membrane porin, OprD family. compare
Psest_3215 -0.9 -2.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare


Specific Phenotypes

For 30 genes in this experiment

For stress Fusidic acid sodium salt in Pseudomonas stutzeri RCH2

For stress Fusidic acid sodium salt across organisms