Experiment set4H3 for Pseudomonas stutzeri RCH2

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LB with Fusidic acid sodium salt 0.016 mg/ml

Group: stress
Media: LB + Fusidic acid sodium salt (0.016 mg/ml)
Culturing: psRCH2_ML7, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
By: Kelly on 6/24/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 557 E5,E6

Specific Phenotypes

For 30 genes in this experiment

For stress Fusidic acid sodium salt in Pseudomonas stutzeri RCH2

For stress Fusidic acid sodium salt across organisms

SEED Subsystems

Subsystem #Specific
Cobalt-zinc-cadmium resistance 2
DNA repair, UvrABC system 2
Proteolysis in bacteria, ATP-dependent 2
Bacterial Chemotaxis 1
Central meta-cleavage pathway of aromatic compound degradation 1
Control of cell elongation - division cycle in Bacilli 1
DNA Repair Base Excision 1
Hemin transport system 1
Malonate decarboxylase 1
Peptidoglycan Biosynthesis 1
Proteasome bacterial 1
Purine conversions 1
Transcription factors bacterial 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
fatty acid biosynthesis initiation (type II) 3 3 1
malonate degradation I (biotin-independent) 3 3 1
CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis 3 1 1
adenine and adenosine salvage V 3 1 1
purine deoxyribonucleosides degradation II 3 1 1
fatty acid biosynthesis initiation (mitochondria) 4 2 1
adenine and adenosine salvage III 4 2 1
purine deoxyribonucleosides degradation I 4 1 1
fatty acid biosynthesis initiation (plant mitochondria) 4 1 1
superpathway of fatty acid biosynthesis initiation 5 4 1
adenosine nucleotides degradation II 5 4 1
purine ribonucleosides degradation 6 1 1
superpathway of purine deoxyribonucleosides degradation 7 2 1
pederin biosynthesis 14 2 2
superpathway of CDP-glucose-derived O-antigen building blocks biosynthesis 8 1 1
bryostatin biosynthesis 19 2 2
purine nucleotides degradation II (aerobic) 11 8 1
mycobactin biosynthesis 11 1 1
superpathway of fatty acid biosynthesis I (E. coli) 16 15 1
mupirocin biosynthesis 26 2 1
corallopyronin A biosynthesis 30 2 1
superpathway of fatty acid biosynthesis II (plant) 43 38 1
superpathway of fatty acids biosynthesis (E. coli) 53 51 1