Experiment set4H3 for Phaeobacter inhibens DSM 17395

Compare to:

L-Citrulline carbon source

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c16920 +1.8 5.4 molybdenum cofactor biosynthesis protein C compare
PGA1_78p00030 +1.7 2.2 putative multicopper oxidase compare
PGA1_c17030 +1.5 3.8 peptidoglycan binding domain-containing protein compare
PGA1_c33600 +1.4 1.2 hypothetical protein compare
PGA1_c28600 +1.4 3.7 tRNA-Met compare
PGA1_c17680 +1.4 2.2 hypothetical protein compare
PGA1_65p00280 +1.3 1.7 Protein of unknown function (DUF2793)./Domain of unknown function (DUF3476). compare
PGA1_c29180 +1.3 2.6 peroxidase-like protein compare
PGA1_c14140 +1.3 3.3 hypothetical protein compare
PGA1_c18630 +1.2 2.9 hypothetical protein compare
PGA1_c18380 +1.2 2.0 Phage Head-Tail Attachment. compare
PGA1_c19090 +1.2 3.3 Protein required for attachment to host cells compare
PGA1_78p00060 +1.1 2.3 Uncharacterized protein conserved in bacteria compare
PGA1_65p00450 +1.1 3.1 UDP-glucose 6-dehydrogenase Ugd compare
PGA1_262p01280 +1.1 3.3 transcriptional regulator, TetR family compare
PGA1_262p00400 +1.1 2.4 putative cytochrome c peroxidase compare
PGA1_c17660 +1.1 1.7 hypothetical protein compare
PGA1_c02900 +1.1 1.8 putative molybdopterin-converting factor subunit 1 compare
PGA1_78p00510 +1.0 2.0 multidrug transporter MdtB compare
PGA1_c06140 +1.0 4.7 putative bacterial type II/III secretion system protein compare
PGA1_c11280 +1.0 5.6 Putative hemolysin compare
PGA1_c03880 +1.0 7.5 putative transcriptional activator protein RaiR compare
PGA1_c05680 +1.0 4.6 Predicted membrane protein compare
PGA1_65p00070 +1.0 1.7 putative regulatory protein, LuxR family compare
PGA1_c23810 +1.0 2.3 Protein of unknown function (DUF2842). compare
PGA1_c06100 +0.9 4.1 type II secretion system protein F-like protein compare
PGA1_c28770 +0.9 5.2 taurine--pyruvate aminotransferase Tpa compare
PGA1_c29120 +0.9 2.2 hypothetical protein compare
PGA1_78p00500 +0.9 1.6 putative transcriptional regulator compare
PGA1_c05490 +0.9 2.6 ureidoglycolate hydrolase AllA compare
PGA1_c06170 +0.9 3.2 hypothetical protein compare
PGA1_c25990 +0.9 1.4 hypothetical protein compare
PGA1_c06200 +0.9 3.6 probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B compare
PGA1_c02030 +0.9 1.6 phosphoglycerate mutase-like protein compare
PGA1_c17620 +0.9 4.5 Uncharacterized conserved protein compare
PGA1_c06070 +0.9 4.0 hypothetical protein compare
PGA1_65p00260 +0.9 2.8 putative metallopeptidase compare
PGA1_c02790 +0.9 5.6 putative carboxy-terminal-processing protease compare
PGA1_c31230 +0.8 1.5 hypothetical protein compare
PGA1_c08220 +0.8 2.1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. compare
PGA1_c23830 +0.8 6.7 putative acetyltransferase compare
PGA1_c23680 +0.8 1.5 putative transcriptional regulator, crp family compare
PGA1_c21050 +0.8 2.7 glutaredoxin-like protein compare
PGA1_c17500 +0.8 2.7 Protein of unknown function (DUF3179). compare
PGA1_c29240 +0.8 2.9 hypothetical protein compare
PGA1_c11360 +0.8 3.5 Uncharacterized conserved protein compare
PGA1_c28840 +0.8 4.0 acetate kinase AckA compare
PGA1_c28750 +0.8 4.5 aminotransferase class-III compare
PGA1_c11610 +0.8 4.0 Uncharacterized protein conserved in bacteria compare
PGA1_c10590 +0.8 1.7 putative ATP-dependent RNA helicase RhlE compare
PGA1_65p00430 +0.8 2.3 putative glycosyl transferase compare
PGA1_c33190 +0.8 3.4 putative anti-sigma-B factor antagonist compare
PGA1_c12100 +0.8 1.8 transcriptional regulator , MerR family compare
PGA1_c26890 +0.8 2.3 putative endoribonuclease compare
PGA1_c17590 +0.8 2.8 hypothetical protein compare
PGA1_c11470 +0.8 2.3 acetyltransferase domain-containing protein compare
PGA1_c03330 +0.8 3.1 tetratricopeptide repeat-containing protein compare
PGA1_c23860 +0.8 2.3 nitrile hydratase accessory protein compare
PGA1_c23740 +0.8 3.0 ribose-5-phosphate isomerase A compare
PGA1_c23730 +0.8 2.0 hypothetical protein compare
PGA1_c23650 +0.8 3.0 hypothetical protein compare
PGA1_c32590 +0.8 3.1 hypothetical protein compare
PGA1_c20020 +0.8 2.5 Putative GTPases (G3E family) compare
PGA1_c34120 +0.8 1.0 HTH-type transcriptional regulator PetP compare
PGA1_c33550 +0.8 4.1 putative fatty acid desaturase compare
PGA1_c31960 +0.8 4.3 conserved hypothetical integral membrane protein compare
PGA1_65p00340 +0.8 2.1 Sulfotransferase family. compare
PGA1_c22860 +0.8 1.6 hypothetical protein compare
PGA1_c28730 +0.8 3.8 Predicted glutamine amidotransferase compare
PGA1_262p01120 +0.8 1.1 hypothetical protein compare
PGA1_c23750 +0.7 2.3 Uncharacterized conserved protein compare
PGA1_c27110 +0.7 2.5 Protein of unknown function (DUF1328). compare
PGA1_c03080 +0.7 2.3 molybdenum cofactor biosynthesis protein B compare
PGA1_c22840 +0.7 2.8 putative type IV secretory pathway virB3 protein compare
PGA1_c05470 +0.7 1.4 hydroxyisourate hydrolase compare
PGA1_c03230 +0.7 3.5 putative formate dehydrogenase, subunit FdhD compare
PGA1_262p00960 +0.7 7.0 Prephenate dehydratase. compare
PGA1_c34480 +0.7 1.8 UTP--glucose-1-phosphate uridylyltransferase CelA compare
PGA1_c05880 +0.7 2.9 hypothetical protein compare
PGA1_c35930 +0.7 3.5 hypothetical protein compare
PGA1_c23880 +0.7 2.5 nitrile hydratase subunit alpha compare
PGA1_c34880 +0.7 5.1 putative response regulator compare
PGA1_c09050 +0.7 2.9 thiamine-phosphate pyrophosphorylase ThiE compare
PGA1_262p02160 +0.7 3.7 putative chemotaxis response regulator protein-glutamate methylesterase compare
PGA1_c31790 +0.7 1.6 Protein of unknown function (DUF2798). compare
PGA1_78p00490 +0.7 0.6 putative HTH-type transcriptional regulator compare
PGA1_c11060 +0.7 3.5 cold shock-like protein CspE compare
PGA1_c08590 +0.7 4.1 heme NO binding domain-containing protein compare
PGA1_c29010 +0.7 2.8 putative helix-turn-helix protein compare
PGA1_c01990 +0.7 3.7 glutamate/glutamine/aspartate/asparagine transport system permease protein BztB compare
PGA1_c21100 +0.7 3.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
PGA1_c11090 +0.7 3.3 hypothetical protein compare
PGA1_c10585 +0.7 2.3 hypothetical protein compare
PGA1_c16410 +0.7 2.6 ribosomal large subunit pseudouridine synthase E compare
PGA1_c11410 +0.7 2.6 putative integral membrane protein compare
PGA1_c25880 +0.7 3.2 putative DNA packaging phage protein compare
PGA1_c11620 +0.7 1.7 Uncharacterized conserved protein compare
PGA1_c22680 +0.7 2.0 Arc-like DNA binding domain. compare
PGA1_262p00300 +0.7 2.0 ABC transporter, extracellular solute-binding protein compare
PGA1_c06160 +0.7 2.2 hypothetical protein compare
PGA1_c21260 +0.7 1.8 hypothetical protein compare
PGA1_262p01930 +0.7 1.2 putative transcriptional regulator, ArsR family compare
PGA1_c17610 +0.7 3.5 putative alanine racemase compare
PGA1_c09480 +0.7 1.1 putative protein MraZ compare
PGA1_c28810 +0.7 3.5 transcriptional regulator, GntR family compare
PGA1_c11030 +0.7 2.5 MoxR-like ATPases compare
PGA1_c06820 +0.7 3.3 dipeptide transport ATP-binding protein DppF compare
PGA1_c20100 +0.6 2.6 Protein of unknown function (DUF1353). compare
PGA1_c13640 +0.6 2.9 Phosphopantetheine attachment site. compare
PGA1_c19060 +0.6 3.3 ABC transporter, ATP-binding protein compare
PGA1_c35260 +0.6 1.6 ATP-dependent protease HslV compare
PGA1_c11400 +0.6 1.8 ferric uptake regulation protein Fur compare
PGA1_c22820 +0.6 3.1 lytic transglycosylase-like protein compare
PGA1_c11310 +0.6 1.5 Uncharacterized conserved protein compare
PGA1_c08900 +0.6 3.5 putative capsule polysaccharide export protein KpsS compare
PGA1_c11350 +0.6 2.5 anhydro-N-acetylmuramic acid kinase AnmK compare
PGA1_c04360 +0.6 2.0 putative phosphoglycerate mutase family protein compare
PGA1_c29070 +0.6 1.6 integral membrane protein PecM compare
PGA1_c26830 +0.6 2.0 phenylacetic acid degradation protein PaaZ compare
PGA1_c29080 +0.6 3.0 hypothetical protein compare
PGA1_c27100 +0.6 2.3 putative ferritin compare
PGA1_c03180 +0.6 1.7 hypothetical protein compare
PGA1_c05840 +0.6 1.3 Uncharacterized conserved small protein compare
PGA1_c23580 +0.6 2.8 Predicted membrane protein compare
PGA1_c31930 +0.6 4.2 putative transporter, MFS family compare
PGA1_c30000 +0.6 1.2 ATP-dependent Clp protease adaptor protein ClpS compare
PGA1_c16190 +0.6 1.6 hypothetical protein compare
PGA1_c35670 +0.6 2.8 Uncharacterized conserved protein compare
PGA1_262p01060 +0.6 1.5 Protein of unknown function (DUF995). compare
PGA1_c11370 +0.6 2.2 putative integral membrane protein compare
PGA1_c30510 +0.6 2.7 putative leucine-responsive regulatory protein compare
PGA1_c05630 +0.6 2.5 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
PGA1_c16690 +0.6 3.0 binding protein-dependent transport system, inner membrane component compare
PGA1_c20920 +0.6 1.4 granule associated protein (phasin) compare
PGA1_c08550 +0.6 1.8 Protein of unknown function (DUF3572). compare
PGA1_c29110 +0.6 1.6 intracellular protease PfpI compare
PGA1_c21110 +0.6 2.5 Protein of unknown function (DUF1185). compare
PGA1_c28860 +0.6 2.9 citrate synthase GltA compare
PGA1_c07650 +0.6 3.4 hypothetical protein compare
PGA1_c07720 +0.6 1.9 universal stress protein compare
PGA1_c18340 +0.6 1.5 putative baseplate assembly protein W compare
PGA1_c10200 +0.6 1.0 molybdenum cofactor biosynthesis protein A compare
PGA1_c07740 +0.6 1.5 putative gluconate 5-dehydrogenase compare
PGA1_c06080 +0.6 1.7 hypothetical protein compare
PGA1_c28500 +0.6 1.8 putative transposase compare
PGA1_c28790 +0.6 2.3 Predicted permeases compare
PGA1_c10100 +0.6 1.7 putative glutathione transport system permease protein GsiD compare
PGA1_c30410 +0.6 1.4 HTH-type transcriptional regulator, AsnC family compare
PGA1_c28960 +0.6 2.0 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC-like protein compare
PGA1_c35190 +0.6 1.9 putative protein FxsA compare
PGA1_c10120 +0.6 2.8 putative glutathione-binding protein GsiB compare
PGA1_c10310 +0.6 2.1 hypothetical protein compare
PGA1_c21990 +0.6 1.7 putative metal-dependent hydrolase compare
PGA1_c20530 +0.6 1.8 putative transcriptional regulator compare
PGA1_c11810 +0.6 1.6 hypothetical protein compare
PGA1_c17630 +0.6 2.2 hypothetical protein compare
PGA1_c32000 +0.6 2.7 cytochrome c compare
PGA1_c00680 +0.6 1.2 transcriptional regulator, arsR family compare
PGA1_c05530 +0.6 1.9 putative allantoin catabolism protein compare
PGA1_c31740 +0.5 3.0 hypothetical protein compare
PGA1_c23640 +0.5 3.1 Protein of unknown function (DUF1217). compare
PGA1_c31880 +0.5 4.5 signal transduction histidine kinase compare
PGA1_65p00370 +0.5 1.1 putative glycosyl transferase compare
PGA1_c28850 +0.5 3.1 phosphate actetyl/butyryl transferase compare
PGA1_262p00060 +0.5 0.8 putative glycosyl transferase compare
PGA1_c28720 +0.5 1.6 allophanate hydrolase, subunit 1 compare
PGA1_c17820 +0.5 2.2 gene transfer agent major capsid protein compare
PGA1_c18570 +0.5 2.2 hypothetical protein compare
PGA1_c00400 +0.5 1.3 Protein of unknown function (DUF2783). compare
PGA1_c35780 +0.5 3.6 flagellar basal-body rod protein FlgG compare
PGA1_c11330 +0.5 2.8 Uncharacterized protein involved in methicillin resistance compare
PGA1_c08880 +0.5 3.7 capsule polysaccharide export protein KpsC compare
PGA1_c23770 +0.5 2.6 L-serine dehydratase TdcG compare
PGA1_c31800 +0.5 3.0 protein YgbM compare
PGA1_c26940 +0.5 3.0 cytosine deaminase CodA compare
PGA1_c11220 +0.5 3.1 Predicted transcriptional regulators compare
PGA1_c06000 +0.5 1.5 chorismate mutase-like protein compare
PGA1_c11320 +0.5 2.0 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PGA1_c21130 +0.5 1.5 Uncharacterized conserved protein compare
PGA1_c07750 +0.5 2.0 histidinol dehydrogenase HisD compare
PGA1_c17670 +0.5 2.9 transcriptional regulator, crp family compare
PGA1_c20250 +0.5 1.5 Predicted integral membrane protein compare
PGA1_c24310 +0.5 2.1 putative capsular polysaccharide transport system, ATP-binding protein compare
PGA1_c33930 +0.5 2.9 fumarylacetoacetate hydrolase family protein compare
PGA1_c16520 +0.5 1.2 putative branched-chain amino acid transporter, ATP-binding protein compare
PGA1_c35940 +0.5 3.5 Core-2/I-Branching enzyme. compare
PGA1_c26720 +0.5 1.6 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
PGA1_c31730 +0.5 2.0 hypothetical protein compare
PGA1_c17160 +0.5 0.8 Stress-induced morphogen (activity unknown) compare
PGA1_c32870 +0.5 3.2 putative heparinase II/III-like protein compare
PGA1_c17760 +0.5 1.3 gene transfer agent (GTA) protein compare
PGA1_c32700 +0.5 3.0 putative saccharopine dehydrogenase (NADP+, L-glutamate-forming) compare
PGA1_c31820 +0.5 2.8 putative ATPase compare
PGA1_c26410 +0.5 1.6 hypothetical protein compare
PGA1_c02500 +0.5 1.5 transcriptional regulator, GntR family compare
PGA1_c26380 +0.5 2.0 ABC transporter, ATP-binding protein compare
PGA1_c11100 +0.5 2.1 Predicted membrane protein compare
PGA1_262p00920 +0.5 1.6 Membrane proteins related to metalloendopeptidases compare
PGA1_c00610 +0.5 0.5 acetyltransferase, GNAT family compare
PGA1_c17260 +0.5 0.7 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Citrulline in Phaeobacter inhibens DSM 17395

For carbon source L-Citrulline across organisms