Experiment set4H24 for Shewanella amazonensis SB2B
LB with Aluminum chloride hydrate 1.25 mM
Group: stressMedia: LB + Aluminum chloride hydrate (1.25 mM)
Culturing: SB2B_ML5, 48 well microplate; Tecan Infinite F200, Aerobic, at 37 (C), shaken=orbital
By: Adam on 7/26/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 590 B7,B8
Specific Phenotypes
For 2 genes in this experiment
For stress Aluminum chloride hydrate in Shewanella amazonensis SB2B
For stress Aluminum chloride hydrate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Biogenesis of cytochrome c oxidases | 1 |
| Lipid A modifications | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| photosynthesis light reactions | 4 | 1 | 1 |
| NADPH to cytochrome c oxidase via plastocyanin (thylakoid membrane) | 4 | 1 | 1 |
| superpathway of photosynthetic hydrogen production | 6 | 1 | 1 |
| oxygenic photosynthesis | 17 | 12 | 1 |
| ethene biosynthesis V (engineered) | 25 | 19 | 1 |
| photosynthetic 3-hydroxybutanoate biosynthesis (engineered) | 26 | 21 | 1 |
| 1-butanol autotrophic biosynthesis (engineered) | 27 | 20 | 1 |