Experiment set4H19 for Pseudomonas stutzeri RCH2

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Psest_1492 -5.1 -9.3 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0062 -4.4 -12.2 tryptophan synthase, alpha subunit compare
Psest_0063 -3.5 -10.2 tryptophan synthase, beta subunit compare
Psest_4219 -3.5 -3.3 DNA polymerase I compare
Psest_2944 -3.3 -9.0 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2872 -2.9 -3.3 protein RecA compare
Psest_0958 -2.7 -12.0 Oligoketide cyclase/lipid transport protein compare
Psest_3092 -2.6 -3.8 ribonuclease III, bacterial compare
Psest_1496 -2.5 -4.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_1704 -2.2 -3.2 Dehydrogenases (flavoproteins) compare
Psest_3647 -2.1 -8.2 Indole-3-glycerol phosphate synthase compare
Psest_3648 -2.0 -10.4 anthranilate phosphoribosyltransferase compare
Psest_1031 -2.0 -10.5 Uncharacterized protein conserved in bacteria compare
Psest_0498 -2.0 -4.0 ribosome small subunit-dependent GTPase A compare
Psest_3810 -1.9 -5.2 orotate phosphoribosyltransferase compare
Psest_0193 -1.9 -2.1 conserved hypothetical protein compare
Psest_2584 -1.8 -8.3 Phosphoribosylanthranilate isomerase compare
Psest_4191 -1.7 -3.1 Transcriptional regulator compare
Psest_3449 -1.7 -2.4 DJ-1 family protein compare
Psest_0209 -1.5 -1.2 membrane protein AbrB duplication compare
Psest_4274 -1.5 -3.8 hypothetical protein compare
Psest_4078 -1.5 -3.1 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_4335 -1.5 -4.8 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_3998 -1.5 -5.6 glutamate--cysteine ligase compare
Psest_1661 -1.5 -3.6 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0280 -1.5 -11.0 homoserine O-acetyltransferase compare
Psest_1660 -1.5 -3.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1999 -1.4 -2.5 pseudouridine synthase compare
Psest_2104 -1.4 -3.9 IscR-regulated protein YhgI compare
Psest_0309 -1.4 -1.6 RND family efflux transporter, MFP subunit compare
Psest_0313 -1.3 -4.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1947 -1.3 -3.7 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1655 -1.3 -5.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0279 -1.3 -5.6 methionine biosynthesis protein MetW compare
Psest_1657 -1.2 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2775 -1.2 -4.0 Glycerol-3-phosphate dehydrogenase compare
Psest_1452 -1.2 -8.0 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_4310 -1.2 -2.6 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3700 -1.2 -0.9 hypothetical protein compare
Psest_0260 -1.2 -2.5 Cell division protein compare
Psest_2862 -1.2 -6.8 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3649 -1.2 -6.9 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3129 -1.2 -2.2 tyrosine recombinase XerD compare
Psest_3650 -1.2 -8.1 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0417 -1.2 -3.6 Acyl-CoA dehydrogenases compare
Psest_2414 -1.1 -3.2 TolR protein compare
Psest_3456 -1.1 -1.3 RNA polymerase sigma factor, sigma-70 family compare
Psest_2229 -1.1 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_0028 -1.0 -3.7 Coproporphyrinogen III oxidase compare
Psest_2578 -1.0 -7.9 O-succinylhomoserine sulfhydrylase compare
Psest_3767 -1.0 -4.1 tyrosine recombinase XerC compare
Psest_1651 -1.0 -3.6 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_0575 -1.0 -1.3 HrpA-like helicases compare
Psest_0311 -1.0 -3.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0558 -1.0 -1.1 urease, beta subunit compare
Psest_3550 -1.0 -1.9 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_1814 -1.0 -6.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1143 -1.0 -5.8 Small-conductance mechanosensitive channel compare
Psest_2714 -1.0 -2.2 7-cyano-7-deazaguanine reductase compare
Psest_2646 -1.0 -3.1 SOS regulatory protein LexA compare
Psest_3047 -1.0 -2.1 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3884 -0.9 -1.0 Signal transduction histidine kinase compare
Psest_4183 -0.9 -2.3 PilZ domain. compare
Psest_4209 -0.9 -2.6 Uncharacterized conserved small protein compare
Psest_0393 -0.9 -4.3 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3494 -0.9 -1.6 hypothetical protein compare
Psest_3664 -0.9 -2.0 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_3123 -0.9 -2.8 dihydroorotase, homodimeric type compare
Psest_3766 -0.9 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1907 -0.9 -1.3 hypothetical protein compare
Psest_0191 -0.8 -1.1 PAS domain S-box compare
Psest_3554 -0.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2863 -0.8 -3.4 Transcriptional regulator compare
Psest_0089 -0.8 -2.4 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN compare
Psest_3790 -0.8 -4.9 Cytochrome c5 compare
Psest_2719 -0.8 -2.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0846 -0.8 -2.9 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2025 -0.8 -1.6 cold shock domain protein CspD compare
Psest_0831 -0.8 -1.2 hypothetical protein compare
Psest_0844 -0.8 -3.8 High-affinity Fe2+/Pb2+ permease compare
Psest_3039 -0.7 -1.3 periplasmic nitrate reductase, NapE protein compare
Psest_3064 -0.7 -2.9 hypothetical protein compare
Psest_1282 -0.7 -2.1 Amidases related to nicotinamidase compare
Psest_1905 -0.7 -1.7 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_0998 -0.7 -2.7 poly(A) polymerase compare
Psest_0678 -0.7 -1.4 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_3013 -0.7 -1.2 cobyrinic acid a,c-diamide synthase compare
Psest_2232 -0.7 -5.0 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_4243 -0.7 -1.6 type VI secretion lipoprotein, VC_A0113 family compare
Psest_1242 -0.7 -2.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_4134 -0.7 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3824 -0.7 -2.0 Predicted membrane protein compare
Psest_0312 -0.7 -3.3 Superfamily II DNA and RNA helicases compare
Psest_1292 -0.7 -4.7 monothiol glutaredoxin, Grx4 family compare
Psest_0218 -0.7 -2.2 Acyl-CoA hydrolase compare
Psest_1910 -0.7 -2.0 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_2358 -0.7 -1.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3784 -0.7 -1.7 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2718 -0.7 -1.0 hypothetical protein compare
Psest_1295 -0.7 -4.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2446 -0.7 -1.4 acetyl-CoA acetyltransferases compare
Psest_0843 -0.7 -5.2 hypothetical protein compare
Psest_2648 -0.7 -2.0 hypothetical protein compare
Psest_0691 -0.7 -5.3 ribonuclease R compare
Psest_2531 -0.7 -5.4 cytochrome c oxidase accessory protein FixG compare
Psest_2946 -0.7 -2.7 septum site-determining protein MinD compare
Psest_2405 -0.7 -1.7 NAD-dependent protein deacetylases, SIR2 family compare
Psest_0516 -0.7 -5.0 D-alanyl-D-alanine carboxypeptidase compare
Psest_3365 -0.7 -2.8 Predicted membrane protein compare
Psest_0457 -0.7 -2.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1804 -0.6 -2.3 Superfamily II DNA and RNA helicases compare
Psest_0515 -0.6 -2.4 rare lipoprotein A compare
Psest_0161 -0.6 -1.6 Membrane-bound metallopeptidase compare
Psest_1388 -0.6 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2123 -0.6 -1.4 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_1650 -0.6 -3.5 hypothetical protein compare
Psest_3492 -0.6 -2.3 hypothetical protein compare
Psest_1354 -0.6 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0759 -0.6 -1.3 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_3305 -0.6 -3.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3338 -0.6 -1.3 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_4044 -0.6 -4.1 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3339 -0.6 -3.5 Signal transduction histidine kinase compare
Psest_3307 -0.6 -3.7 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0708 -0.6 -1.5 outer membrane assembly lipoprotein YfiO compare
Psest_3890 -0.6 -0.7 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3893 -0.6 -1.4 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_0542 -0.6 -3.4 AMP nucleosidase compare
Psest_2001 -0.6 -1.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2037 -0.6 -2.7 uroporphyrin-III C-methyltransferase compare
Psest_3507 -0.6 -2.4 FOG: EAL domain compare
Psest_1424 -0.6 -0.9 Lipoate-protein ligase A compare
Psest_2778 -0.6 -2.4 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0852 -0.6 -2.4 glucose-6-phosphate 1-dehydrogenase compare
Psest_3883 -0.6 -3.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2243 -0.6 -1.0 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_0765 -0.6 -2.8 hypothetical protein compare
Psest_1284 -0.6 -2.5 exodeoxyribonuclease VII, large subunit compare
Psest_0782 -0.6 -2.7 Transcriptional regulator of aromatic amino acids metabolism compare
Psest_3943 -0.6 -1.6 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1752 -0.6 -1.8 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_2153 -0.6 -1.9 formate dehydrogenase, gamma subunit compare
Psest_3145 -0.6 -1.7 hypothetical protein compare
Psest_2329 -0.6 -4.6 Transcriptional regulator compare
Psest_2590 -0.6 -1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_1012 -0.6 -2.5 Signal transduction histidine kinase compare
Psest_1313 -0.6 -1.3 Uncharacterized conserved small protein compare
Psest_2146 -0.6 -2.7 Transcriptional regulator compare
Psest_3306 -0.6 -2.7 conserved hypothetical integral membrane protein compare
Psest_0181 -0.5 -3.5 glycine cleavage system T protein compare
Psest_0310 -0.5 -1.7 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0400 -0.5 -2.3 Geranylgeranyl pyrophosphate synthase compare
Psest_2285 -0.5 -2.6 ATP-dependent protease La compare
Psest_2903 -0.5 -2.0 Site-specific recombinase XerD compare
Psest_1975 -0.5 -3.7 Predicted transcriptional regulators compare
Psest_0969 -0.5 -1.8 transcription elongation factor GreA compare
Psest_3938 -0.5 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_1532 -0.5 -2.2 DNA recombination-dependent growth factor C compare
Psest_1173 -0.5 -2.2 hypothetical protein compare
Psest_0848 -0.5 -1.8 hypothetical protein compare
Psest_3458 -0.5 -0.7 hypothetical protein compare
Psest_3301 -0.5 -1.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_3795 -0.5 -3.3 Glycine/D-amino acid oxidases (deaminating) compare
Psest_0595 -0.5 -3.3 Uncharacterized conserved protein compare
Psest_1951 -0.5 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0375 -0.5 -3.1 NAD-dependent aldehyde dehydrogenases compare
Psest_2365 -0.5 -1.9 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_1378 -0.5 -3.0 hypothetical protein compare
Psest_0655 -0.5 -0.9 Chemotaxis signal transduction protein compare
Psest_1642 -0.5 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2864 -0.5 -2.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3247 -0.5 -1.2 Uncharacterized membrane protein compare
Psest_3860 -0.5 -1.6 Predicted permeases compare
Psest_3903 -0.5 -2.5 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_0106 -0.5 -2.0 malonate decarboxylase, gamma subunit compare
Psest_2217 -0.5 -2.0 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes compare
Psest_1419 -0.5 -2.4 Transcriptional regulator compare
Psest_0359 -0.5 -1.2 Transcriptional regulators compare
Psest_1622 -0.5 -2.0 hypothetical protein compare
Psest_0397 -0.5 -3.5 Small-conductance mechanosensitive channel compare
Psest_2144 -0.5 -3.8 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3480 -0.5 -0.9 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3837 -0.5 -2.5 malate synthase G compare
Psest_3787 -0.5 -1.9 Domain of Unknown Function (DUF1080). compare
Psest_2594 -0.5 -2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1640 -0.5 -3.7 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_2325 -0.5 -3.4 alpha-L-glutamate ligase-related protein compare
Psest_1261 -0.5 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_2406 -0.5 -3.1 nitrite reductase [NAD(P)H], large subunit compare
Psest_2349 -0.5 -1.8 urea carboxylase-associated protein 1 compare
Psest_1724 -0.5 -1.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4051 -0.5 -0.9 molybdenum-pterin binding domain compare
Psest_4049 -0.5 -1.2 hypothetical protein compare
Psest_2324 -0.5 -3.9 hypothetical protein compare
Psest_2150 -0.5 -1.3 DNA polymerase LigD, polymerase domain compare
Psest_1283 -0.4 -1.5 Membrane proteins related to metalloendopeptidases compare
Psest_2651 -0.4 -1.7 DNA topoisomerase I, bacterial compare
Psest_1414 -0.4 -2.2 Lactoylglutathione lyase and related lyases compare
Psest_4010 -0.4 -1.1 peroxiredoxin, OsmC subfamily compare
Psest_0187 -0.4 -1.5 Metal-dependent hydrolase compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in lb experiments