Experiment set4H16 for Shewanella amazonensis SB2B
LB with Sodium Chlorite 0.15625 mM
Group: stressMedia: LB + Sodium Chlorite (0.15625 mM)
Culturing: SB2B_ML5, 48 well microplate; Tecan Infinite F200, Aerobic, at 37 (C), shaken=orbital
By: Adam on 7/26/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 589 D3,D4
Specific Phenotypes
For 14 genes in this experiment
For stress Sodium Chlorite in Shewanella amazonensis SB2B
For stress Sodium Chlorite across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Molybdenum cofactor biosynthesis | 5 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Purine metabolism
- Puromycin biosynthesis
- Pyrimidine metabolism
- Lipopolysaccharide biosynthesis
- Nicotinate and nicotinamide metabolism
- Biosynthesis of alkaloids derived from histidine and purine
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| molybdopterin biosynthesis | 6 | 5 | 4 |
| NAD salvage pathway III (to nicotinamide riboside) | 3 | 2 | 1 |
| UTP and CTP dephosphorylation I | 7 | 5 | 2 |
| purine nucleotides degradation II (aerobic) | 11 | 8 | 3 |
| inosine 5'-phosphate degradation | 4 | 3 | 1 |
| guanosine nucleotides degradation III | 4 | 2 | 1 |
| adenosine nucleotides degradation I | 8 | 3 | 2 |
| purine nucleotides degradation I (plants) | 12 | 4 | 3 |
| guanosine nucleotides degradation I | 4 | 1 | 1 |
| guanosine nucleotides degradation II | 4 | 1 | 1 |
| adenosine nucleotides degradation II | 5 | 3 | 1 |
| superpathway of purines degradation in plants | 18 | 4 | 3 |
| superpathway of guanosine nucleotides degradation (plants) | 6 | 1 | 1 |
| ureide biosynthesis | 7 | 3 | 1 |
| tunicamycin biosynthesis | 9 | 1 | 1 |
| NAD salvage (plants) | 11 | 3 | 1 |