Experiment set4H15 for Pseudomonas stutzeri RCH2

Compare to:

LB with Neomycin trisulfate salt hydrate 0.004 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_1492 -4.9 -6.7 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_1496 -4.1 -3.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_0845 -3.6 -1.4 hypothetical protein compare
Psest_3960 -3.5 -3.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0063 -3.2 -9.4 tryptophan synthase, beta subunit compare
Psest_0062 -3.1 -11.6 tryptophan synthase, alpha subunit compare
Psest_3664 -3.1 -4.1 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2946 -2.8 -6.6 septum site-determining protein MinD compare
Psest_0725 -2.8 -4.6 Negative regulator of beta-lactamase expression compare
Psest_1144 -2.8 -7.6 AmpG-related permease compare
Psest_3637 -2.7 -7.1 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_4219 -2.7 -4.0 DNA polymerase I compare
Psest_2643 -2.6 -4.4 Beta-glucosidase-related glycosidases compare
Psest_2975 -2.5 -5.3 tRNA_Arg_CCT compare
Psest_0280 -2.5 -14.8 homoserine O-acetyltransferase compare
Psest_0515 -2.5 -5.6 rare lipoprotein A compare
Psest_3810 -2.4 -5.0 orotate phosphoribosyltransferase compare
Psest_0998 -2.4 -4.8 poly(A) polymerase compare
Psest_0310 -2.3 -3.7 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2578 -2.2 -13.9 O-succinylhomoserine sulfhydrylase compare
Psest_2001 -2.1 -4.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2872 -2.1 -2.8 protein RecA compare
Psest_0514 -2.1 -7.4 lytic murein transglycosylase B compare
Psest_0279 -2.1 -7.0 methionine biosynthesis protein MetW compare
Psest_0533 -2.1 -6.9 Sel1 repeat. compare
Psest_0257 -2.0 -6.0 Predicted Zn-dependent peptidases compare
Psest_4191 -1.9 -3.3 Transcriptional regulator compare
Psest_3322 -1.9 -14.8 TIGR02099 family protein compare
Psest_0516 -1.9 -9.9 D-alanyl-D-alanine carboxypeptidase compare
Psest_3129 -1.8 -2.3 tyrosine recombinase XerD compare
Psest_1510 -1.8 -5.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2581 -1.8 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_2285 -1.8 -5.5 ATP-dependent protease La compare
Psest_0844 -1.7 -6.2 High-affinity Fe2+/Pb2+ permease compare
Psest_0708 -1.6 -2.0 outer membrane assembly lipoprotein YfiO compare
Psest_0313 -1.6 -5.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3270 -1.6 -2.6 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0846 -1.6 -4.7 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2945 -1.6 -2.8 septum site-determining protein MinC compare
Psest_1471 -1.6 -7.0 Predicted membrane protein compare
Psest_1053 -1.5 -2.2 hypothetical protein compare
Psest_0843 -1.5 -9.9 hypothetical protein compare
Psest_3565 -1.5 -1.0 hypothetical protein compare
Psest_0691 -1.5 -9.6 ribonuclease R compare
Psest_2944 -1.4 -4.7 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_1452 -1.4 -8.4 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_1031 -1.4 -7.5 Uncharacterized protein conserved in bacteria compare
Psest_3316 -1.4 -6.9 Predicted P-loop-containing kinase compare
Psest_4307 -1.4 -3.6 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_3777 -1.4 -3.0 diguanylate cyclase (GGDEF) domain compare
Psest_3128 -1.2 -4.6 Protein-disulfide isomerase compare
Psest_3546 -1.2 -1.0 Phosphatidylglycerophosphatase A and related proteins compare
Psest_0857 -1.2 -1.3 Membrane transporters of cations and cationic drugs compare
Psest_4098 -1.2 -3.0 Superfamily I DNA and RNA helicases compare
Psest_1532 -1.2 -3.8 DNA recombination-dependent growth factor C compare
Psest_3998 -1.2 -4.8 glutamate--cysteine ligase compare
Psest_2714 -1.2 -2.3 7-cyano-7-deazaguanine reductase compare
Psest_4363 -1.2 -6.4 ATPases involved in chromosome partitioning compare
Psest_1692 -1.1 -7.3 conserved hypothetical protein, YceG family compare
Psest_0309 -1.1 -1.5 RND family efflux transporter, MFP subunit compare
Psest_1947 -1.1 -3.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_4310 -1.1 -2.4 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2585 -1.1 -1.5 pseudouridylate synthase I compare
Psest_0485 -1.1 -3.6 clan AA aspartic protease, TIGR02281 family compare
Psest_1704 -1.1 -1.8 Dehydrogenases (flavoproteins) compare
Psest_3767 -1.0 -3.6 tyrosine recombinase XerC compare
Psest_4243 -1.0 -1.3 type VI secretion lipoprotein, VC_A0113 family compare
Psest_1166 -1.0 -1.8 transcriptional regulator, ArgP family compare
Psest_3215 -1.0 -3.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_3878 -1.0 -2.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0489 -1.0 -2.7 phosphoserine phosphatase SerB compare
Psest_1870 -1.0 -1.4 Transcriptional regulators compare
Psest_4338 -0.9 -4.0 Fe2+-dicitrate sensor, membrane component compare
Psest_2447 -0.9 -1.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3744 -0.9 -4.7 Disulfide bond formation protein DsbB compare
Psest_2590 -0.9 -1.3 3-isopropylmalate dehydratase, small subunit compare
Psest_1012 -0.9 -3.3 Signal transduction histidine kinase compare
Psest_1516 -0.9 -1.8 Uncharacterized lipoprotein compare
Psest_0218 -0.9 -2.2 Acyl-CoA hydrolase compare
Psest_0575 -0.9 -0.9 HrpA-like helicases compare
Psest_1567 -0.9 -2.8 Transcriptional regulator compare
Psest_1242 -0.9 -1.9 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3449 -0.9 -1.2 DJ-1 family protein compare
Psest_2359 -0.9 -2.3 Predicted permeases compare
Psest_1295 -0.9 -5.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2555 -0.9 -6.2 hypothetical protein compare
Psest_0312 -0.9 -3.9 Superfamily II DNA and RNA helicases compare
Psest_4124 -0.9 -3.1 hypothetical protein compare
Psest_1075 -0.9 -3.0 Predicted transcriptional regulators compare
Psest_3494 -0.9 -1.4 hypothetical protein compare
Psest_4396 -0.9 -6.2 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0445 -0.9 -6.3 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3002 -0.8 -1.2 Putative translation initiation inhibitor, yjgF family compare
Psest_2037 -0.8 -4.5 uroporphyrin-III C-methyltransferase compare
Psest_4209 -0.8 -1.6 Uncharacterized conserved small protein compare
Psest_3323 -0.8 -2.4 ribonuclease, Rne/Rng family compare
Psest_3365 -0.8 -2.5 Predicted membrane protein compare
Psest_2762 -0.8 -2.0 hypothetical protein compare
Psest_2405 -0.8 -1.7 NAD-dependent protein deacetylases, SIR2 family compare
Psest_1315 -0.8 -1.1 hypothetical protein compare
Psest_0013 -0.8 -5.1 Lauroyl/myristoyl acyltransferase compare
Psest_2240 -0.8 -1.3 hypothetical protein compare
Psest_0086 -0.8 -2.3 hypothetical protein compare
Psest_0601 -0.8 -2.4 hypothetical protein compare
Psest_1417 -0.8 -0.9 hypothetical protein compare
Psest_3015 -0.8 -5.0 hypothetical protein compare
Psest_3862 -0.8 -6.1 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0952 -0.8 -2.5 Uncharacterized conserved protein compare
Psest_3317 -0.8 -3.8 Phosphotransferase System HPr (HPr) Family compare
Psest_0609 -0.8 -1.3 hypothetical protein compare
Psest_2846 -0.8 -3.4 monovalent cation/proton antiporter, MnhG/PhaG subunit compare
Psest_4201 -0.8 -0.9 general secretion pathway protein F compare
Psest_3173 -0.8 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_0958 -0.8 -4.7 Oligoketide cyclase/lipid transport protein compare
Psest_0186 -0.8 -2.4 Protein-disulfide isomerase compare
Psest_1679 -0.7 -1.6 ribonuclease, Rne/Rng family compare
Psest_3123 -0.7 -2.5 dihydroorotase, homodimeric type compare
Psest_1563 -0.7 -1.7 Protein of unknown function (DUF548). compare
Psest_0311 -0.7 -2.8 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_2414 -0.7 -2.0 TolR protein compare
Psest_1163 -0.7 -2.6 diguanylate cyclase (GGDEF) domain compare
Psest_1535 -0.7 -3.2 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_2862 -0.7 -4.8 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_1388 -0.7 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_3562 -0.7 -1.9 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_0260 -0.7 -1.1 Cell division protein compare
Psest_0113 -0.7 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_1052 -0.7 -1.3 Uncharacterized protein involved in chromosome partitioning compare
Psest_1506 -0.7 -3.2 queuosine biosynthesis protein QueC compare
Psest_1919 -0.7 -1.6 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_3827 -0.7 -1.7 Transcriptional regulator compare
Psest_1877 -0.7 -1.4 AraC-type DNA-binding domain-containing proteins compare
Psest_1354 -0.7 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3228 -0.7 -4.9 Zn-dependent protease with chaperone function compare
Psest_1099 -0.7 -5.3 Type I restriction-modification system methyltransferase subunit compare
Psest_1505 -0.7 -1.5 Organic radical activating enzymes compare
Psest_1142 -0.7 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_3332 -0.7 -4.5 K+-dependent Na+/Ca+ exchanger related-protein compare
Psest_1918 -0.7 -2.9 Calcineurin-like phosphoesterase. compare
Psest_1199 -0.7 -2.3 OHCU decarboxylase compare
Psest_3296 -0.7 -3.3 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_4366 -0.7 -2.9 Multisubunit Na+/H+ antiporter, MnhG subunit compare
Psest_0209 -0.7 -0.6 membrane protein AbrB duplication compare
Psest_1259 -0.7 -2.9 23S rRNA m2A2503 methyltransferase compare
Psest_3961 -0.7 -2.6 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Psest_3647 -0.6 -2.7 Indole-3-glycerol phosphate synthase compare
Psest_3017 -0.6 -2.9 Predicted phosphohydrolases compare
Psest_0161 -0.6 -1.8 Membrane-bound metallopeptidase compare
Psest_1824 -0.6 -1.6 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0632 -0.6 -1.7 hypothetical protein compare
Psest_4044 -0.6 -4.1 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3118 -0.6 -4.0 endonuclease III compare
Psest_2070 -0.6 -4.6 FOG: LysM repeat compare
Psest_0872 -0.6 -0.9 Helix-turn-helix. compare
Psest_3991 -0.6 -1.3 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_1296 -0.6 -3.7 excinuclease ABC, B subunit compare
Psest_1098 -0.6 -4.1 Restriction endonuclease S subunits compare
Psest_4252 -0.6 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1302 -0.6 -2.7 Predicted thioesterase compare
Psest_2981 -0.6 -1.4 sodium pump decarboxylases, gamma subunit compare
Psest_1016 -0.6 -2.4 putative TIM-barrel protein, nifR3 family compare
Psest_0687 -0.6 -3.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1791 -0.6 -2.6 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_0631 -0.6 -3.5 Site-specific recombinase XerD compare
Psest_2667 -0.6 -1.6 Uncharacterized protein involved in propionate catabolism compare
Psest_3180 -0.6 -4.1 Exonuclease I compare
Psest_3189 -0.6 -2.2 hypothetical protein compare
Psest_2413 -0.6 -1.1 Periplasmic protein TonB, links inner and outer membranes compare
Psest_3085 -0.6 -3.6 methyltransferase, putative compare
Psest_0852 -0.6 -2.3 glucose-6-phosphate 1-dehydrogenase compare
Psest_0181 -0.6 -2.9 glycine cleavage system T protein compare
Psest_0045 -0.6 -2.5 hypothetical protein compare
Psest_3576 -0.6 -5.0 excinuclease ABC, A subunit compare
Psest_2646 -0.6 -1.7 SOS regulatory protein LexA compare
Psest_1752 -0.6 -1.2 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0837 -0.6 -1.6 Putative lipid carrier protein compare
Psest_1285 -0.6 -2.9 hypothetical protein compare
Psest_2933 -0.6 -4.0 Signal transduction histidine kinase compare
Psest_0114 -0.6 -1.1 RNA polymerase sigma factor, sigma-70 family compare
Psest_1904 -0.6 -2.1 Arabinose efflux permease compare
Psest_2894 -0.6 -1.8 addiction module antidote protein, HigA family compare
Psest_0508 -0.6 -3.1 gamma-glutamyl phosphate reductase compare
Psest_2339 -0.6 -2.6 transcription elongation factor GreB compare
Psest_0650 -0.6 -1.8 RNA polymerase sigma factor, sigma-70 family compare
Psest_0292 -0.5 -1.5 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_2114 -0.5 -2.7 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0187 -0.5 -1.7 Metal-dependent hydrolase compare
Psest_0521 -0.5 -4.0 lytic murein transglycosylase compare
Psest_1241 -0.5 -2.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_0326 -0.5 -4.2 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3732 -0.5 -3.4 polyphosphate kinase 1 compare
Psest_1613 -0.5 -2.2 hypothetical protein compare
Psest_1179 -0.5 -0.9 2-hydroxy-3-oxopropionate reductase compare
Psest_1695 -0.5 -1.8 Tfp pilus assembly protein PilZ compare
Psest_0349 -0.5 -2.6 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_2162 -0.5 -3.2 Uncharacterized conserved protein compare
Psest_3756 -0.5 -1.6 hypothetical protein compare
Psest_1724 -0.5 -2.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2850 -0.5 -0.8 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3042 -0.5 -0.8 Nitrate reductase cytochrome c-type subunit compare


Specific Phenotypes

For 2 genes in this experiment

For stress Neomycin trisulfate salt hydrate in Pseudomonas stutzeri RCH2

For stress Neomycin trisulfate salt hydrate across organisms