Experiment set4H14 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth with Benzethonium chloride 0.025 mM

Group: stress
Media: marine_broth_2216 + Benzethonium chloride (0.025 mM)
Culturing: Phaeo_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Jordan on 8/6/2013
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 622 D3,D4

Specific Phenotypes

For 26 genes in this experiment

For stress Benzethonium chloride in Phaeobacter inhibens DSM 17395

For stress Benzethonium chloride across organisms

SEED Subsystems

Subsystem #Specific
Adenosyl nucleosidases 1
Archaeal lipids 1
Bacterial Cell Division 1
Biotin biosynthesis 1
Cobalt-zinc-cadmium resistance 1
DNA-replication 1
Deoxyribose and Deoxynucleoside Catabolism 1
ECF class transporters 1
Folate Biosynthesis 1
Hydantoin metabolism 1
Isoprenoid Biosynthesis 1
Protein degradation 1
Purine conversions 1
Pyrimidine utilization 1
Transcription factors bacterial 1
YjeE 1
ZZ gjo need homes 1
cAMP signaling in bacteria 1
polyprenyl synthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
purine deoxyribonucleosides degradation I 4 3 3
purine ribonucleosides degradation 6 5 4
purine deoxyribonucleosides degradation II 3 2 2
purine nucleotides degradation II (aerobic) 11 10 6
inosine 5'-phosphate degradation 4 4 2
guanosine nucleotides degradation III 4 4 2
adenine and adenosine salvage I 2 2 1
xanthine and xanthosine salvage 2 2 1
guanine and guanosine salvage I 2 2 1
adenine and adenosine salvage III 4 3 2
superpathway of purine deoxyribonucleosides degradation 7 6 3
adenosine nucleotides degradation II 5 4 2
pyrimidine deoxyribonucleosides degradation 3 3 1
uracil degradation I (reductive) 3 3 1
thymine degradation 3 3 1
NAD salvage pathway III (to nicotinamide riboside) 3 2 1
superpathway of guanine and guanosine salvage 3 2 1
adenine and adenosine salvage V 3 1 1
ureide biosynthesis 7 6 2
UTP and CTP dephosphorylation I 7 5 2
guanosine nucleotides degradation II 4 4 1
adenosine nucleotides degradation I 8 7 2
purine nucleotides degradation I (plants) 12 10 3
guanosine nucleotides degradation I 4 3 1
all-trans-farnesol biosynthesis 4 3 1
superpathway of pyrimidine ribonucleosides degradation 5 5 1
mono-trans, poly-cis decaprenyl phosphate biosynthesis 5 2 1
nucleoside and nucleotide degradation (archaea) 10 3 2
superpathway of pyrimidine deoxyribonucleosides degradation 6 6 1
superpathway of guanosine nucleotides degradation (plants) 6 5 1
superpathway of purines degradation in plants 18 12 3
bisabolene biosynthesis (engineered) 6 3 1
nucleoside and nucleotide degradation (halobacteria) 6 2 1
fluoroacetate and fluorothreonine biosynthesis 6 1 1
superpathway of purine nucleotide salvage 14 13 2
mevalonate pathway II (haloarchaea) 7 2 1
mevalonate pathway I (eukaryotes and bacteria) 7 2 1
isoprene biosynthesis II (engineered) 8 2 1
mevalonate pathway III (Thermoplasma) 8 2 1
mevalonate pathway IV (archaea) 8 2 1
methylerythritol phosphate pathway I 9 9 1
methylerythritol phosphate pathway II 9 9 1
tunicamycin biosynthesis 9 1 1
isoprene biosynthesis I 10 9 1
superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) 10 5 1
peptidoglycan recycling II 10 2 1
NAD salvage (plants) 11 6 1
superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) 12 12 1
taxadiene biosynthesis (engineered) 13 12 1
peptidoglycan recycling I 14 8 1
salinosporamide A biosynthesis 15 3 1
arsenic detoxification (mammals) 17 8 1
superpathway of ergosterol biosynthesis II 26 11 1
superpathway of ergosterol biosynthesis I 26 4 1
superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis 33 14 1
superpathway of cholesterol biosynthesis 38 4 1
Methanobacterium thermoautotrophicum biosynthetic metabolism 56 21 1