Experiment set4H11 for Pseudomonas stutzeri RCH2
LB with MreB Perturbing Compound A22 0.002 mg/ml
Group: stressMedia: LB + MreB Perturbing Compound A22 (0.002 mg/ml)
Culturing: psRCH2_ML7, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
By: Kelly on 6/24/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 558 B5,B6
Specific Phenotypes
For 4 genes in this experiment
For stress MreB Perturbing Compound A22 in Pseudomonas stutzeri RCH2
For stress MreB Perturbing Compound A22 across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| ABC transporter oligopeptide (TC 3.A.1.5.1) | 1 |
| Purine conversions | 1 |
| Sex pheromones in Enterococcus faecalis and other Firmicutes | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Ubiquinone and menaquinone biosynthesis
- Purine metabolism
- Histidine metabolism
- Tyrosine metabolism
- Tryptophan metabolism
- Benzoxazinone biosynthesis
- Naphthalene and anthracene degradation
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| adenine and adenosine salvage V | 3 | 1 | 1 |
| purine deoxyribonucleosides degradation II | 3 | 1 | 1 |
| adenine and adenosine salvage III | 4 | 2 | 1 |
| purine deoxyribonucleosides degradation I | 4 | 1 | 1 |
| adenosine nucleotides degradation II | 5 | 4 | 1 |
| purine ribonucleosides degradation | 6 | 1 | 1 |
| superpathway of purine deoxyribonucleosides degradation | 7 | 2 | 1 |
| purine nucleotides degradation II (aerobic) | 11 | 8 | 1 |