Experiment set4H10 for Pseudomonas stutzeri RCH2

Compare to:

LB with Cephalothin sodium salt 0.04 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_1496 -4.3 -1.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_3301 -4.1 -4.5 Predicted transcriptional regulator, BolA superfamily compare
Psest_1888 -3.9 -1.0 Sua5/YciO/YrdC/YwlC family protein compare
Psest_3883 -3.8 -6.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3322 -3.8 -18.1 TIGR02099 family protein compare
Psest_2581 -3.7 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_1492 -3.6 -6.5 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3884 -3.6 -0.9 Signal transduction histidine kinase compare
Psest_1510 -3.5 -2.4 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3129 -3.4 -1.7 tyrosine recombinase XerD compare
Psest_4219 -3.3 -2.2 DNA polymerase I compare
Psest_0514 -3.2 -9.1 lytic murein transglycosylase B compare
Psest_1724 -3.1 -3.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4396 -3.1 -13.5 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3720 -2.9 -15.9 penicillin-binding protein, 1A family compare
Psest_3228 -2.8 -11.7 Zn-dependent protease with chaperone function compare
Psest_1163 -2.8 -4.2 diguanylate cyclase (GGDEF) domain compare
Psest_0186 -2.8 -2.7 Protein-disulfide isomerase compare
Psest_2855 -2.7 -1.6 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0013 -2.7 -10.4 Lauroyl/myristoyl acyltransferase compare
Psest_0310 -2.7 -1.8 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2545 -2.6 -3.4 recombination protein RecR compare
Psest_2872 -2.6 -1.7 protein RecA compare
Psest_2333 -2.6 -1.0 Protein of unknown function (DUF3359). compare
Psest_0309 -2.6 -1.5 RND family efflux transporter, MFP subunit compare
Psest_0844 -2.6 -4.7 High-affinity Fe2+/Pb2+ permease compare
Psest_0515 -2.5 -4.8 rare lipoprotein A compare
Psest_0393 -2.5 -5.0 Methylase of chemotaxis methyl-accepting proteins compare
Psest_4191 -2.5 -1.7 Transcriptional regulator compare
Psest_2946 -2.5 -4.5 septum site-determining protein MinD compare
Psest_0297 -2.5 -6.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0575 -2.5 -0.9 HrpA-like helicases compare
Psest_4049 -2.5 -1.4 hypothetical protein compare
Psest_3148 -2.5 -1.3 hypothetical protein compare
Psest_0257 -2.4 -4.5 Predicted Zn-dependent peptidases compare
Psest_0708 -2.4 -2.0 outer membrane assembly lipoprotein YfiO compare
Psest_0445 -2.4 -13.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0063 -2.4 -8.4 tryptophan synthase, beta subunit compare
Psest_0296 -2.4 -9.6 glutathione synthetase, prokaryotic compare
Psest_3960 -2.3 -1.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1111 -2.3 -3.2 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3092 -2.3 -2.0 ribonuclease III, bacterial compare
Psest_1486 -2.3 -3.1 hypothetical protein compare
Psest_1772 -2.3 -4.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0691 -2.3 -12.3 ribonuclease R compare
Psest_1809 -2.3 -10.7 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1217 -2.2 -7.2 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein conserved
Psest_0181 -2.2 -5.7 glycine cleavage system T protein compare
Psest_2981 -2.2 -1.2 sodium pump decarboxylases, gamma subunit compare
Psest_0311 -2.2 -4.1 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_4345 -2.2 -9.1 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3882 -2.2 -7.5 Opacity protein and related surface antigens compare
Psest_3721 -2.1 -6.1 Malic enzyme compare
Psest_2945 -2.1 -2.0 septum site-determining protein MinC compare
Psest_1907 -2.1 -0.8 hypothetical protein compare
Psest_1179 -2.1 -1.3 2-hydroxy-3-oxopropionate reductase compare
Psest_0028 -2.1 -4.5 Coproporphyrinogen III oxidase compare
Psest_0062 -2.0 -8.3 tryptophan synthase, alpha subunit compare
Psest_1567 -2.0 -2.9 Transcriptional regulator compare
Psest_3645 -2.0 -8.2 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3998 -2.0 -5.1 glutamate--cysteine ligase compare
Psest_1871 -1.9 -7.6 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_1814 -1.9 -13.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1822 -1.9 -6.6 Glycosyltransferases involved in cell wall biogenesis compare
Psest_2756 -1.9 -0.9 hypothetical protein compare
Psest_2070 -1.9 -6.9 FOG: LysM repeat conserved
Psest_0725 -1.8 -2.4 Negative regulator of beta-lactamase expression compare
Psest_0189 -1.8 -5.3 Negative regulator of beta-lactamase expression compare
Psest_1679 -1.8 -1.3 ribonuclease, Rne/Rng family compare
Psest_1054 -1.8 -4.6 Diaminopimelate decarboxylase compare
Psest_0998 -1.8 -2.2 poly(A) polymerase compare
Psest_0857 -1.8 -0.9 Membrane transporters of cations and cationic drugs compare
Psest_1524 -1.7 -3.9 Sel1 repeat. compare
Psest_1532 -1.7 -3.2 DNA recombination-dependent growth factor C compare
Psest_0298 -1.7 -5.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0260 -1.7 -2.0 Cell division protein compare
Psest_3766 -1.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2339 -1.7 -4.5 transcription elongation factor GreB compare
Psest_2933 -1.7 -7.9 Signal transduction histidine kinase compare
Psest_0650 -1.7 -3.2 RNA polymerase sigma factor, sigma-70 family compare
Psest_2015 -1.7 -2.4 Type II secretory pathway, component PulD compare
Psest_3842 -1.7 -2.3 Transcriptional regulators compare
Psest_0872 -1.7 -1.0 Helix-turn-helix. compare
Psest_1818 -1.7 -8.2 GDP-mannose 4,6-dehydratase compare
Psest_0259 -1.6 -1.3 cell division ATP-binding protein FtsE compare
Psest_0537 -1.6 -1.0 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0442 -1.6 -5.4 ATPases of the AAA+ class compare
Psest_0498 -1.6 -1.7 ribosome small subunit-dependent GTPase A compare
Psest_1144 -1.6 -4.2 AmpG-related permease compare
Psest_0120 -1.6 -4.3 hypothetical protein compare
Psest_2809 -1.6 -2.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2285 -1.6 -3.7 ATP-dependent protease La compare
Psest_3878 -1.6 -2.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3543 -1.6 -1.5 hypothetical protein compare
Psest_0846 -1.6 -3.2 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_4363 -1.5 -6.6 ATPases involved in chromosome partitioning compare
Psest_1367 -1.5 -3.2 hypothetical protein compare
Psest_0133 -1.5 -1.3 type VI secretion protein, VC_A0107 family compare
Psest_1488 -1.5 -10.0 outer membrane porin, OprD family. compare
Psest_4370 -1.5 -2.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1354 -1.5 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2243 -1.5 -0.8 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3712 -1.5 -5.1 Type II secretory pathway, component ExeA (predicted ATPase) compare
Psest_0252 -1.5 -9.2 hypothetical protein compare
Psest_1824 -1.5 -2.3 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1183 -1.4 -1.7 hydroxyisourate hydrolase compare
Psest_1543 -1.4 -3.1 Predicted transcription regulator, contains HTH domain (MarR family) compare
Psest_3664 -1.4 -2.5 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0613 -1.4 -6.4 hypothetical protein compare
Psest_1879 -1.4 -2.3 Trk-type K+ transport systems, membrane components compare
Psest_2744 -1.4 -1.2 Uncharacterized conserved protein compare
Psest_1601 -1.4 -1.2 Signal transduction histidine kinase compare
Psest_0187 -1.4 -2.9 Metal-dependent hydrolase compare
Psest_4250 -1.4 -8.3 hypothetical protein compare
Psest_4044 -1.4 -6.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0045 -1.4 -3.0 hypothetical protein compare
Psest_2997 -1.4 -6.8 Long-chain fatty acid transport protein compare
Psest_1008 -1.4 -0.9 hypothetical protein compare
Psest_4159 -1.4 -5.6 flagellar motor stator protein MotA compare
Psest_3146 -1.4 -1.3 hypothetical protein compare
Psest_0216 -1.4 -2.9 Predicted permeases compare
Psest_3910 -1.3 -0.6 Uncharacterized protein conserved in bacteria compare
Psest_0086 -1.3 -1.9 hypothetical protein compare
Psest_2846 -1.3 -2.4 monovalent cation/proton antiporter, MnhG/PhaG subunit compare
Psest_0542 -1.3 -4.7 AMP nucleosidase compare
Psest_3743 -1.3 -3.1 Regulator of sigma D compare
Psest_2911 -1.3 -1.2 Protein of unknown function (DUF2945). compare
Psest_1905 -1.3 -1.2 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_0409 -1.3 -2.3 Putative homoserine kinase type II (protein kinase fold) compare
Psest_3918 -1.3 -5.5 hypothetical protein compare
Psest_2944 -1.3 -2.9 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_3650 -1.3 -7.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1640 -1.3 -5.5 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3474 -1.3 -1.8 Short-chain dehydrogenases of various substrate specificities compare
Psest_1642 -1.3 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_2304 -1.3 -0.9 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2342 -1.3 -4.1 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_1259 -1.3 -3.1 23S rRNA m2A2503 methyltransferase compare
Psest_1939 -1.3 -3.6 Tetratricopeptide repeat. compare
Psest_1938 -1.3 -3.3 hypothetical protein conserved
Psest_0146 -1.3 -4.9 Uncharacterized protein involved in outer membrane biogenesis compare
Psest_1602 -1.2 -1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0485 -1.2 -1.8 clan AA aspartic protease, TIGR02281 family compare
Psest_3409 -1.2 -3.3 hypothetical protein compare
Psest_0750 -1.2 -2.8 hypothetical protein compare
Psest_1405 -1.2 -4.0 hypothetical protein compare
Psest_2314 -1.2 -5.0 Mg2+ and Co2+ transporters compare
Psest_0790 -1.2 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3990 -1.2 -4.6 PAP2 superfamily. compare
Psest_3916 -1.2 -7.6 hypothetical protein compare
Psest_4017 -1.2 -9.7 hypothetical protein compare
Psest_3272 -1.2 -2.5 TIGR00252 family protein compare
Psest_1540 -1.2 -1.0 biotin-dependent carboxylase uncharacterized domain compare
Psest_3422 -1.2 -4.4 hypothetical protein compare
Psest_2278 -1.2 -2.9 coenzyme PQQ biosynthesis protein PqqD compare
Psest_0673 -1.2 -3.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_0602 -1.2 -5.9 hypothetical protein compare
Psest_0312 -1.2 -3.7 Superfamily II DNA and RNA helicases compare
Psest_4110 -1.2 -7.0 Deoxycytidylate deaminase compare
Psest_3447 -1.2 -0.4 Uncharacterized MobA-related protein compare
Psest_3173 -1.2 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_1098 -1.2 -5.4 Restriction endonuclease S subunits compare
Psest_1692 -1.2 -5.4 conserved hypothetical protein, YceG family compare
Psest_3510 -1.2 -4.8 Na+-dependent transporters of the SNF family compare
Psest_0020 -1.2 -3.3 K+ transport systems, NAD-binding component compare
Psest_2104 -1.2 -2.0 IscR-regulated protein YhgI compare
Psest_0440 -1.1 -3.3 hypothetical protein compare
Psest_1663 -1.1 -2.1 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0193 -1.1 -0.6 conserved hypothetical protein compare
Psest_0687 -1.1 -5.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0168 -1.1 -3.8 Uncharacterized conserved protein compare
Psest_0462 -1.1 -10.3 Lipid A core - O-antigen ligase and related enzymes compare
Psest_3500 -1.1 -2.0 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Psest_2629 -1.1 -2.1 Flp pilus assembly protein, pilin Flp compare
Psest_3992 -1.1 -4.9 Uncharacterized protein conserved in archaea compare
Psest_3860 -1.1 -2.3 Predicted permeases compare
Psest_0615 -1.1 -7.8 RND family efflux transporter, MFP subunit compare
Psest_0443 -1.1 -5.0 methionine-S-sulfoxide reductase compare
Psest_1821 -1.1 -6.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3717 -1.1 -3.9 Tfp pilus assembly protein PilO compare
Psest_0909 -1.1 -3.7 hypothetical protein compare
Psest_3332 -1.1 -4.7 K+-dependent Na+/Ca+ exchanger related-protein compare
Psest_3576 -1.1 -8.4 excinuclease ABC, A subunit compare
Psest_2561 -1.1 -0.6 hypothetical protein compare
Psest_1378 -1.1 -4.6 hypothetical protein compare
Psest_4364 -1.1 -2.5 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_2316 -1.1 -6.5 phosphoenolpyruvate synthase compare
Psest_3291 -1.1 -5.5 Lipid A core - O-antigen ligase and related enzymes compare
Psest_1296 -1.1 -4.9 excinuclease ABC, B subunit compare
Psest_1056 -1.1 -1.3 2-isopropylmalate synthase, bacterial type compare
Psest_0346 -1.1 -2.1 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_4175 -1.1 -6.1 Flagellar motor switch/type III secretory pathway protein compare
Psest_4119 -1.1 -2.6 hypothetical protein compare
Psest_3230 -1.1 -3.9 Uncharacterized conserved protein compare
Psest_2110 -1.1 -2.3 hypothetical protein compare
Psest_3739 -1.1 -2.9 Small-conductance mechanosensitive channel compare
Psest_1626 -1.1 -1.7 Predicted integral membrane protein compare
Psest_4078 -1.1 -1.5 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3767 -1.1 -2.2 tyrosine recombinase XerC compare
Psest_0281 -1.1 -4.5 Dynamin family. compare


Specific Phenotypes

For 60 genes in this experiment

For stress Cephalothin sodium salt in Pseudomonas stutzeri RCH2

For stress Cephalothin sodium salt across organisms