Experiment set3S526 for Rhodopseudomonas palustris CGA009

Compare to:

Sodium acetate trihydrate carbon source

200 most important genes:

  gene name fitness t score description  
TX73_019145 -5.2 -13.0 prephenate dehydratase compare
TX73_024775 -5.0 -20.7 O-succinylhomoserine sulfhydrylase compare
TX73_001320 -3.9 -21.5 NAD(P)-dependent glycerol-3-phosphate dehydrogenase compare
TX73_019175 -3.9 -2.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
TX73_005530 -3.1 -3.7 FAD-binding oxidoreductase compare
TX73_013960 -2.9 -4.8 pyridoxine 5'-phosphate synthase compare
TX73_008010 -2.5 -9.7 form I ribulose bisphosphate carboxylase large subunit compare
TX73_008015 -2.2 -4.9 ribulose bisphosphate carboxylase small subunit compare
TX73_008020 -2.2 -7.3 CbbX protein compare
TX73_024670 -2.1 -7.2 3-hydroxybutyryl-CoA dehydrogenase compare
TX73_018540 -2.1 -14.7 phosphomethylpyrimidine synthase ThiC compare
TX73_001570 -1.8 -2.7 protein-export chaperone SecB compare
TX73_015855 -1.7 -3.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
TX73_012935 -1.7 -6.1 LL-diaminopimelate aminotransferase compare
TX73_019180 -1.6 -3.0 methionine synthase compare
TX73_010695 -1.6 -1.2 EscE/YscE/SsaE family type III secretion system needle protein co-chaperone compare
TX73_018140 -1.6 -2.6 ribbon-helix-helix domain-containing protein compare
TX73_020255 -1.4 -3.8 RNA polymerase-binding protein DksA compare
TX73_017010 -1.3 -1.2 TetR/AcrR family transcriptional regulator compare
TX73_013225 -1.2 -2.8 glycosyltransferase family 2 protein compare
TX73_000395 -1.2 -2.1 nucleotidyltransferase family protein compare
TX73_000270 -1.1 -4.9 PTS IIA-like nitrogen regulatory protein PtsN compare
TX73_018835 -1.1 -5.0 bifunctional transaldolase/phosoglucose isomerase compare
TX73_000980 -1.1 -1.9 2-oxoglutarate dehydrogenase E1 component compare
TX73_013965 -1.1 -1.5 holo-ACP synthase compare
TX73_013955 -1.1 -4.5 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
TX73_010270 -1.1 -1.8 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_002805 -1.1 -2.9 disulfide bond formation protein B compare
TX73_008350 -1.0 -4.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
TX73_000310 -1.0 -1.4 tRNA-Ala compare
TX73_021010 -1.0 -2.1 GtrA family protein compare
TX73_005330 -0.9 -2.6 electron transfer flavoprotein-ubiquinone oxidoreductase compare
TX73_016270 -0.9 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
TX73_013765 -0.9 -5.1 beta-(1-6) glucans synthase compare
TX73_004390 -0.9 -3.3 response regulator transcription factor compare
TX73_018135 -0.9 -1.2 DUF4169 family protein compare
TX73_005955 -0.8 -3.0 DUF2093 domain-containing protein compare
TX73_020290 -0.8 -1.9 flagellar biosynthesis repressor FlbT compare
TX73_015590 -0.8 -1.6 light-harvesting protein compare
TX73_003705 -0.8 -4.9 cobaltochelatase subunit CobN compare
TX73_005435 -0.8 -3.4 hypothetical protein compare
TX73_023355 -0.8 -4.1 hypothetical protein compare
TX73_019280 -0.7 -2.0 branched-chain amino acid ABC transporter permease compare
TX73_021220 -0.7 -2.3 hypothetical protein compare
TX73_018585 -0.7 -1.3 hypothetical protein compare
TX73_013920 -0.7 -4.9 4-hydroxy-tetrahydrodipicolinate synthase compare
TX73_018875 -0.7 -4.1 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
TX73_022570 -0.7 -2.8 redox-regulated ATPase YchF compare
TX73_010470 -0.7 -3.8 acetolactate synthase small subunit compare
TX73_019110 -0.7 -2.5 ABC transporter ATP-binding protein compare
TX73_003700 -0.7 -4.7 cobalamin biosynthesis protein CobW compare
TX73_024230 -0.7 -1.9 trehalose-phosphatase compare
TX73_015240 -0.7 -1.6 NADH-quinone oxidoreductase subunit J compare
TX73_006945 -0.7 -1.8 hypothetical protein compare
TX73_024530 -0.7 -5.3 sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein compare
TX73_015770 -0.6 -5.3 RNA degradosome polyphosphate kinase compare
TX73_024745 -0.6 -2.2 hypothetical protein compare
TX73_021420 -0.6 -3.5 helix-turn-helix transcriptional regulator compare
TX73_023110 -0.6 -2.3 pyridoxal-dependent decarboxylase compare
TX73_014285 -0.6 -1.2 DUF2842 domain-containing protein compare
TX73_024040 -0.6 -1.3 4Fe-4S binding protein compare
TX73_024525 -0.6 -5.0 2-oxoacid:acceptor oxidoreductase family protein compare
TX73_021705 -0.6 -3.0 sigma-54 dependent transcriptional regulator compare
TX73_001065 -0.6 -0.7 heme exporter protein CcmD compare
TX73_010785 -0.6 -1.4 FAD-dependent tricarballylate dehydrogenase TcuA compare
TX73_003745 -0.6 -4.2 HoxN/HupN/NixA family nickel/cobalt transporter compare
TX73_022860 -0.5 -2.0 glycerol-3-phosphate dehydrogenase compare
TX73_020750 -0.5 -2.0 30S ribosomal protein S21 compare
TX73_021975 -0.5 -2.2 CBS domain-containing protein compare
TX73_007790 -0.5 -2.3 hypothetical protein compare
TX73_000610 -0.5 -2.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
TX73_012480 -0.5 -1.6 ABC transporter ATP-binding protein compare
TX73_008135 -0.5 -1.9 YcjX family protein compare
TX73_010770 -0.5 -1.9 precorrin-8X methylmutase compare
TX73_023300 -0.5 -2.3 GIY-YIG nuclease family protein compare
TX73_004425 -0.5 -3.7 zinc ABC transporter ATP-binding protein AztA compare
TX73_002625 -0.5 -2.6 site-specific tyrosine recombinase XerD compare
TX73_012280 -0.5 -1.1 hypothetical protein compare
TX73_021000 -0.5 -3.6 NAD-dependent epimerase/dehydratase family protein compare
TX73_001405 -0.5 -1.1 Trm112 family protein compare
TX73_001350 -0.5 -0.9 HAMP domain-containing protein compare
TX73_003715 -0.5 -3.8 cobyric acid synthase compare
TX73_004395 -0.5 -4.0 PAS domain-containing hybrid sensor histidine kinase/response regulator compare
TX73_002300 -0.5 -1.1 helix-turn-helix domain-containing protein compare
TX73_003125 -0.5 -1.5 aspartate kinase compare
TX73_001825 -0.5 -3.2 translation elongation factor 4 compare
TX73_012090 -0.5 -2.0 hypothetical protein compare
TX73_015410 -0.5 -2.1 dethiobiotin synthase compare
TX73_002960 -0.5 -1.2 ActR/PrrA/RegA family redox response regulator transcription factor compare
TX73_012230 -0.5 -2.1 hypothetical protein compare
TX73_008175 -0.5 -4.2 glutamate racemase compare
TX73_019275 -0.5 -2.3 branched-chain amino acid ABC transporter permease compare
TX73_013745 -0.5 -1.7 light-harvesting antenna LH1, beta subunit compare
TX73_002535 -0.5 -3.2 CarD family transcriptional regulator compare
TX73_021915 -0.4 -1.7 hypothetical protein compare
TX73_014930 -0.4 -1.8 NIPSNAP family protein compare
TX73_024835 -0.4 -1.7 phosphate ABC transporter permease PstA compare
TX73_018080 -0.4 -2.0 FtsH protease activity modulator HflK compare
TX73_010535 -0.4 -3.3 biotin synthase BioB compare
TX73_017425 -0.4 -1.4 sodium:solute symporter compare
TX73_010865 -0.4 -2.2 response regulator compare
TX73_024035 -0.4 -1.0 iron-sulfur cluster assembly accessory protein compare
TX73_002260 -0.4 -0.6 30S ribosome-binding factor RbfA compare
TX73_006455 -0.4 -1.2 adenosylcobinamide-GDP ribazoletransferase compare
TX73_004835 -0.4 -1.4 tetratricopeptide repeat protein compare
TX73_024595 -0.4 -1.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
TX73_015405 -0.4 -2.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
TX73_004435 -0.4 -2.8 metal ABC transporter substrate-binding protein compare
TX73_006440 -0.4 -2.0 urea ABC transporter ATP-binding subunit UrtE compare
TX73_009180 -0.4 -1.0 DUF3237 domain-containing protein compare
TX73_007500 -0.4 -0.9 formate/nitrite transporter family protein compare
TX73_010970 -0.4 -1.8 TonB system transport protein ExbD compare
TX73_001835 -0.4 -2.0 HPr family phosphocarrier protein compare
TX73_012510 -0.4 -2.5 porin compare
TX73_021845 -0.4 -1.3 DUF2849 domain-containing protein compare
TX73_013500 -0.4 -1.5 hypothetical protein compare
TX73_022910 -0.4 -1.1 SlyX family protein compare
TX73_002195 -0.4 -2.7 D-glycerate dehydrogenase compare
TX73_009890 -0.4 -0.9 c-type cytochrome biogenesis protein CcmI compare
TX73_018330 -0.4 -1.2 hypothetical protein compare
TX73_016155 -0.4 -1.6 type I DNA topoisomerase compare
TX73_003225 -0.4 -1.5 tRNA pseudouridine(38-40) synthase TruA compare
TX73_011445 -0.4 -2.2 WYL domain-containing protein compare
TX73_005640 -0.4 -1.1 YebC/PmpR family DNA-binding transcriptional regulator compare
TX73_014755 -0.4 -0.7 twin-arginine translocase TatA/TatE family subunit compare
TX73_002305 -0.4 -1.5 apolipoprotein N-acyltransferase compare
TX73_013770 -0.4 -2.3 hypothetical protein compare
TX73_005115 -0.4 -2.2 cysteine-rich small domain-containing protein compare
TX73_005890 -0.4 -1.9 ChbG/HpnK family deacetylase compare
TX73_008195 -0.4 -1.9 hypothetical protein compare
TX73_002755 -0.4 -1.6 beta-ketoacyl-ACP reductase compare
TX73_002735 -0.4 -3.1 hypothetical protein compare
TX73_012410 -0.4 -1.2 class I SAM-dependent methyltransferase compare
TX73_011515 -0.4 -1.5 VirB3 family type IV secretion system protein compare
TX73_001250 -0.4 -1.1 50S ribosomal protein L19 compare
TX73_023080 -0.4 -1.1 hypothetical protein compare
TX73_019285 -0.4 -2.4 ABC transporter substrate-binding protein compare
TX73_003275 -0.4 -1.0 ribonuclease P protein component compare
TX73_019930 -0.4 -2.4 glycine cleavage system protein GcvH compare
TX73_010545 -0.4 -2.1 2-isopropylmalate synthase compare
TX73_016370 -0.4 -2.6 DUF2384 domain-containing protein compare
TX73_003880 -0.4 -1.5 phosphoadenylyl-sulfate reductase compare
TX73_007485 -0.4 -1.1 CbbQ/NirQ/NorQ/GpvN family protein compare
TX73_010245 -0.4 -1.4 AraC family transcriptional regulator compare
TX73_009120 -0.3 -1.9 multidrug efflux SMR transporter compare
TX73_014210 -0.3 -1.5 MerR family transcriptional regulator compare
TX73_003130 -0.3 -2.2 phosphoenolpyruvate--protein phosphotransferase compare
TX73_017210 -0.3 -1.5 curli-like amyloid fiber formation chaperone CsgH compare
TX73_006000 -0.3 -1.1 molybdopterin converting factor subunit 1 compare
TX73_024840 -0.3 -1.2 phosphate ABC transporter permease subunit PstC compare
TX73_009560 -0.3 -1.6 peptidoglycan-binding protein compare
TX73_018590 -0.3 -0.4 hypothetical protein compare
TX73_024540 -0.3 -1.6 hypothetical protein compare
TX73_016325 -0.3 -1.2 hypothetical protein compare
TX73_024920 -0.3 -1.3 DUF2474 domain-containing protein compare
TX73_024620 -0.3 -1.4 response regulator compare
TX73_006030 -0.3 -2.0 response regulator compare
TX73_022035 -0.3 -2.7 NADH-quinone oxidoreductase subunit M compare
TX73_018685 -0.3 -2.8 trans-aconitate 2-methyltransferase compare
TX73_019710 -0.3 -2.6 branched-chain amino acid ABC transporter permease compare
TX73_020410 -0.3 -2.3 histidine phosphatase family protein compare
TX73_009360 -0.3 -0.8 hypothetical protein compare
TX73_013565 -0.3 -1.6 hypothetical protein compare
TX73_003910 -0.3 -1.7 hypothetical protein compare
TX73_018250 -0.3 -0.7 UDP-3-O-acyl-N-acetylglucosamine deacetylase compare
TX73_021510 -0.3 -1.5 hypothetical protein compare
TX73_013215 -0.3 -1.1 glycosyltransferase family 39 protein compare
TX73_012965 -0.3 -1.6 hypothetical protein compare
TX73_010460 -0.3 -1.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
TX73_007495 -0.3 -1.2 hypothetical protein compare
TX73_022070 -0.3 -2.5 NADH-quinone oxidoreductase subunit F compare
TX73_004840 -0.3 -1.8 thiamine phosphate synthase compare
TX73_002370 -0.3 -2.4 adenosine kinase compare
TX73_023720 -0.3 -2.1 acetate/propionate family kinase compare
TX73_022055 -0.3 -2.0 NADH-quinone oxidoreductase subunit NuoI compare
TX73_000835 -0.3 -1.4 hypothetical protein compare
TX73_014140 -0.3 -0.4 transcription antitermination factor NusB compare
TX73_007300 -0.3 -1.3 hypothetical protein compare
TX73_009160 -0.3 -1.8 4-hydroxybenzoate 3-monooxygenase compare
TX73_017375 -0.3 -1.8 hypothetical protein compare
TX73_022085 -0.3 -1.9 NADH-quinone oxidoreductase subunit B compare
TX73_000350 -0.3 -1.5 LapA family protein compare
TX73_009855 -0.3 -1.9 DUF2793 domain-containing protein compare
TX73_009225 -0.3 -1.6 MarR family transcriptional regulator compare
TX73_004665 -0.3 -2.6 N-formylglutamate amidohydrolase compare
TX73_019925 -0.3 -2.6 glycine cleavage system aminomethyltransferase GcvT compare
TX73_006850 -0.3 -1.9 RNA polymerase sigma factor compare
TX73_012525 -0.3 -1.7 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
TX73_020585 -0.3 -1.1 cytochrome c compare
TX73_014100 -0.3 -1.7 hypothetical protein compare
TX73_022080 -0.3 -2.3 NADH-quinone oxidoreductase subunit C/D compare
TX73_018420 -0.3 -1.8 arsenate reductase (glutaredoxin) compare
TX73_009220 -0.3 -1.8 branched-chain amino acid ABC transporter permease compare
TX73_011195 -0.3 -1.4 cupin domain-containing protein compare
TX73_020595 -0.3 -0.9 hypothetical protein compare
TX73_016075 -0.3 -0.9 BrnT family toxin compare
TX73_013945 -0.3 -1.5 NYN domain-containing protein compare
TX73_018945 -0.3 -1.5 nitronate monooxygenase compare
TX73_022040 -0.3 -2.1 proton-conducting transporter membrane subunit compare
TX73_013575 -0.3 -1.5 ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Rhodopseudomonas palustris CGA009 in carbon source experiments

For carbon source Sodium acetate trihydrate across organisms