Experiment set3S511 for Enterobacter sp. TBS_079

Compare to:

mutant library grown in Supernatant; Pseudomonas frederiksbergensis TBS_004 grown in LB

Group: supernatant
Media: + supernatant from Pseudomonas frederiksbergensis TBS_004 grown in LB (1 x)
Culturing: Enterobacter_TBS_079_ML3, tube, Aerobic, at 30 (C), shaken=200 rpm
By: Robin on 12/14/23

Specific Phenotypes

For 7 genes in this experiment

For supernatant Supernatant; Pseudomonas frederiksbergensis TBS_004 grown in LB in Enterobacter sp. TBS_079

For supernatant Supernatant; Pseudomonas frederiksbergensis TBS_004 grown in LB across organisms

SEED Subsystems

Subsystem #Specific
Terminal cytochrome d ubiquinol oxidases 2
Terminal cytochrome oxidases 2
Arginine Deiminase Pathway 1
Arginine and Ornithine Degradation 1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis 1
Histidine Degradation 1
MLST 1
Polyamine Metabolism 1
Threonine and Homoserine Biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-aspartate biosynthesis 1 1 1
3-(4-hydroxyphenyl)pyruvate biosynthesis 1 1 1
L-aspartate degradation I 1 1 1
malate/L-aspartate shuttle pathway 2 2 1
L-glutamate degradation II 2 2 1
L-tyrosine degradation II 2 1 1
L-tryptophan degradation IV (via indole-3-lactate) 2 1 1
chitobiose degradation 2 1 1
atromentin biosynthesis 2 1 1
aerobic respiration III (alternative oxidase pathway) 3 3 1
L-tyrosine biosynthesis I 3 3 1
L-citrulline degradation 3 3 1
L-phenylalanine biosynthesis I 3 3 1
L-phenylalanine degradation II (anaerobic) 3 2 1
L-asparagine degradation III (mammalian) 3 2 1
indole-3-acetate biosynthesis VI (bacteria) 3 2 1
L-tyrosine degradation IV (to 4-methylphenol) 3 1 1
sulfolactate degradation III 3 1 1
(R)-cysteate degradation 3 1 1
superpathway of L-aspartate and L-asparagine biosynthesis 4 4 1
L-arginine degradation V (arginine deiminase pathway) 4 4 1
L-histidine degradation I 4 4 1
L-tryptophan degradation VIII (to tryptophol) 4 2 1
L-tyrosine degradation III 4 2 1
L-phenylalanine degradation III 4 2 1
trans-4-hydroxy-L-proline degradation I 5 3 1
4-hydroxybenzoate biosynthesis I (eukaryotes) 5 1 1
L-tyrosine degradation V (reductive Stickland reaction) 5 1 1
L-tryptophan degradation XIII (reductive Stickland reaction) 5 1 1
L-phenylalanine degradation VI (reductive Stickland reaction) 5 1 1
L-tyrosine degradation I 5 1 1
superpathway of plastoquinol biosynthesis 5 1 1
C4 photosynthetic carbon assimilation cycle, NAD-ME type 11 8 2
superpathway of L-threonine biosynthesis 6 6 1
TCA cycle VIII (Chlamydia) 6 5 1
superpathway of sulfolactate degradation 6 2 1
coenzyme M biosynthesis II 6 1 1
anaerobic energy metabolism (invertebrates, cytosol) 7 5 1
C4 photosynthetic carbon assimilation cycle, PEPCK type 14 9 2
superpathway of aromatic amino acid biosynthesis 18 18 2
superpathway of L-methionine biosynthesis (transsulfuration) 9 9 1
L-phenylalanine degradation IV (mammalian, via side chain) 9 4 1
allantoin degradation IV (anaerobic) 9 3 1
superpathway of L-tyrosine biosynthesis 10 10 1
superpathway of L-phenylalanine biosynthesis 10 10 1
rosmarinic acid biosynthesis I 10 1 1
(S)-reticuline biosynthesis I 11 1 1
superpathway of L-methionine biosynthesis (by sulfhydrylation) 12 10 1
indole-3-acetate biosynthesis II 12 3 1
superpathway of L-isoleucine biosynthesis I 13 13 1
guadinomine B biosynthesis 13 2 1
superpathway of rosmarinic acid biosynthesis 14 1 1
superpathway of anaerobic energy metabolism (invertebrates) 17 10 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I 18 18 1
aspartate superpathway 25 24 1
anaerobic aromatic compound degradation (Thauera aromatica) 27 3 1
superpathway of chorismate metabolism 59 54 2
Methanobacterium thermoautotrophicum biosynthetic metabolism 56 22 1