Experiment set3S505 for Enterobacter sp. TBS_079

Compare to:

mutant library grown in Supernatant; Bacillus zanthoxyli TBS_040 grown in LB

200 most important genes:

  gene name fitness t score description  
MPMX20_04768 -5.8 -38.3 hypothetical protein compare
MPMX20_01354 -5.3 -3.7 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_01950 -5.2 -7.9 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_01355 -5.0 -2.2 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_03022 -4.8 -4.7 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_04440 -4.3 -3.7 Transcription antitermination protein RfaH compare
MPMX20_03010 -4.3 -10.2 UDP-glucose 4-epimerase compare
MPMX20_04483 -4.2 -5.0 Lipid III flippase compare
MPMX20_04530 -4.1 -14.5 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_01366 -3.8 -9.1 Tol-Pal system protein TolQ compare
MPMX20_01367 -3.8 -14.8 Tol-Pal system protein TolR compare
MPMX20_04442 -3.7 -10.6 Sec-independent protein translocase protein TatC compare
MPMX20_01368 -3.5 -7.7 hypothetical protein compare
MPMX20_03683 -3.5 -3.4 RecBCD enzyme subunit RecB compare
MPMX20_04140 -3.5 -13.2 Malate dehydrogenase compare
MPMX20_01370 -3.4 -9.5 Peptidoglycan-associated lipoprotein compare
MPMX20_03018 -3.4 -10.3 hypothetical protein compare
MPMX20_01351 -3.4 -6.2 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_01353 -3.4 -8.1 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_01369 -3.3 -15.7 Tol-Pal system protein TolB compare
MPMX20_00106 -3.2 -11.7 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_03019 -3.2 -21.9 hypothetical protein compare
MPMX20_03208 -3.1 -9.0 NADH-quinone oxidoreductase subunit L compare
MPMX20_03211 -3.1 -6.8 NADH-quinone oxidoreductase subunit I compare
MPMX20_01352 -3.1 -13.3 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_04443 -3.0 -4.8 Sec-independent protein translocase protein TatB compare
MPMX20_01362 -3.0 -2.9 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_01361 -3.0 -5.3 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_03212 -2.9 -8.3 NADH-quinone oxidoreductase subunit H compare
MPMX20_03213 -2.9 -13.1 NADH-quinone oxidoreductase subunit G compare
MPMX20_00102 -2.8 -3.8 hypothetical protein compare
MPMX20_03756 -2.8 -6.5 FAD assembly factor SdhE compare
MPMX20_01607 -2.8 -8.4 Outer membrane protein A compare
MPMX20_04639 -2.8 -2.6 Phosphate-binding protein PstS compare
MPMX20_04518 -2.7 -8.4 Soluble pyridine nucleotide transhydrogenase compare
MPMX20_04489 -2.7 -21.1 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_03210 -2.7 -8.7 NADH-quinone oxidoreductase subunit J compare
MPMX20_01356 -2.7 -13.2 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_03685 -2.7 -6.5 RecBCD enzyme subunit RecC compare
MPMX20_04119 -2.7 -4.5 DNA polymerase III subunit chi compare
MPMX20_03216 -2.5 -13.5 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_03209 -2.5 -4.5 NADH-quinone oxidoreductase subunit K compare
MPMX20_03986 -2.4 -5.2 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_00110 -2.4 -19.9 hypothetical protein compare
MPMX20_03206 -2.4 -11.7 NADH-quinone oxidoreductase subunit N compare
MPMX20_03215 -2.4 -5.1 NADH-quinone oxidoreductase subunit E compare
MPMX20_01357 -2.4 -9.1 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_00109 -2.3 -19.9 hypothetical protein compare
MPMX20_03021 -2.3 -11.9 hypothetical protein compare
MPMX20_00831 -2.3 -7.5 RNA polymerase-binding transcription factor DksA compare
MPMX20_03214 -2.3 -11.4 NADH-quinone oxidoreductase subunit F compare
MPMX20_03207 -2.3 -8.0 NADH-quinone oxidoreductase subunit M compare
MPMX20_01350 -2.3 -6.5 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_03154 -2.3 -14.5 Inner membrane protein YejM compare
MPMX20_00740 -2.2 -12.0 Carbamoyl-phosphate synthase large chain compare
MPMX20_00739 -2.2 -7.2 Carbamoyl-phosphate synthase small chain compare
MPMX20_04375 -2.2 -10.5 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX20_00108 -2.2 -18.9 hypothetical protein compare
MPMX20_03217 -2.1 -4.4 NADH-quinone oxidoreductase subunit B compare
MPMX20_03017 -2.1 -13.7 hypothetical protein compare
MPMX20_00105 -2.1 -16.1 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_00453 -2.0 -3.9 RNA-binding protein Hfq compare
MPMX20_04520 -2.0 -13.1 Argininosuccinate lyase compare
MPMX20_03020 -2.0 -11.2 hypothetical protein compare
MPMX20_00570 -2.0 -13.7 putative BsuMI modification methylase subunit YdiO compare
MPMX20_04595 -2.0 -3.1 Glutamine synthetase compare
MPMX20_01028 -1.9 -2.8 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_04077 -1.9 -10.9 Argininosuccinate synthase compare
MPMX20_04374 -1.8 -4.9 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
MPMX20_02635 -1.8 -4.2 Release factor glutamine methyltransferase compare
MPMX20_04110 -1.8 -7.2 Nitrogen regulatory protein compare
MPMX20_00480 -1.8 -4.0 50S ribosomal protein L9 compare
MPMX20_01549 -1.8 -1.2 ATP-binding/permease protein CydD compare
MPMX20_04469 -1.8 -4.0 Adenylate cyclase compare
MPMX20_03408 -1.8 -2.4 Co-chaperone protein HscB compare
MPMX20_02574 -1.7 -4.1 putative intracellular septation protein A compare
MPMX20_00807 -1.7 -4.8 Pyruvate dehydrogenase E1 component compare
MPMX20_03267 -1.7 -5.0 Phosphohistidine phosphatase SixA compare
MPMX20_02591 -1.7 -8.5 DNA-binding protein H-NS compare
MPMX20_03016 -1.7 -15.4 Mannose-1-phosphate guanylyltransferase RfbM compare
MPMX20_01029 -1.7 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_03015 -1.7 -15.2 Phosphoglucosamine mutase compare
MPMX20_02891 -1.7 -14.2 hypothetical protein compare
MPMX20_02885 -1.7 -12.5 hypothetical protein compare
MPMX20_04444 -1.6 -1.6 Sec-independent protein translocase protein TatA compare
MPMX20_02020 -1.6 -11.8 Mannose-6-phosphate isomerase compare
MPMX20_01552 -1.6 -6.7 hypothetical protein compare
MPMX20_02884 -1.6 -15.4 hypothetical protein compare
MPMX20_02892 -1.6 -12.2 hypothetical protein compare
MPMX20_02886 -1.6 -13.3 hypothetical protein compare
MPMX20_02896 -1.6 -13.1 Lysozyme RrrD compare
MPMX20_02890 -1.5 -11.9 hypothetical protein compare
MPMX20_02576 -1.5 -4.7 Protein TonB compare
MPMX20_02767 -1.5 -5.5 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_04463 -1.5 -8.0 DNA helicase II compare
MPMX20_01349 -1.4 -5.7 Citrate synthase compare
MPMX20_04306 -1.4 -7.3 Glycerol-3-phosphate regulon repressor compare
MPMX20_02672 -1.4 -12.4 hypothetical protein compare
MPMX20_00899 -1.4 -2.6 Ribonuclease HI compare
MPMX20_02766 -1.4 -5.8 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_00556 -1.4 -8.3 Ornithine carbamoyltransferase subunit F compare
MPMX20_03490 -1.4 -5.8 SsrA-binding protein compare
MPMX20_04279 -1.3 -3.3 Shikimate kinase 1 compare
MPMX20_02768 -1.3 -5.3 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_02869 -1.3 -12.5 hypothetical protein compare
MPMX20_00419 -1.3 -9.8 Aspartate ammonia-lyase compare
MPMX20_04641 -1.3 -3.2 Phosphate transport system permease protein PstA compare
MPMX20_04197 -1.3 -5.3 Trk system potassium uptake protein TrkA compare
MPMX20_01548 -1.3 -1.2 putative ABC transporter ATP-binding/permease protein compare
MPMX20_02898 -1.3 -9.1 hypothetical protein compare
MPMX20_04275 -1.3 -2.8 Ribulose-phosphate 3-epimerase compare
MPMX20_03382 -1.3 -2.0 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_02476 -1.3 -2.4 Putrescine export system permease protein SapC compare
MPMX20_04650 -1.2 -4.0 tRNA modification GTPase MnmE compare
MPMX20_04276 -1.2 -6.6 DNA adenine methylase compare
MPMX20_03479 -1.2 -3.6 30S ribosomal protein S16 compare
MPMX20_02901 -1.2 -8.9 hypothetical protein compare
MPMX20_03218 -1.2 -3.7 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_01065 -1.2 -7.7 Multidrug efflux pump subunit AcrA compare
MPMX20_01064 -1.2 -9.5 Multidrug efflux pump subunit AcrB compare
MPMX20_03310 -1.2 -4.0 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_04038 -1.1 -6.5 Glucitol operon repressor compare
MPMX20_02897 -1.1 -7.8 hypothetical protein compare
MPMX20_03153 -1.1 -2.8 hypothetical protein compare
MPMX20_02895 -1.1 -8.8 hypothetical protein compare
MPMX20_00773 -1.1 -7.4 Catabolite repressor/activator compare
MPMX20_03407 -1.1 -2.6 Chaperone protein HscA compare
MPMX20_02879 -1.1 -6.5 hypothetical protein compare
MPMX20_00720 -1.1 -2.2 Chaperone protein DnaK compare
MPMX20_03396 -1.1 -6.1 Nucleoside diphosphate kinase compare
MPMX20_02883 -1.1 -6.1 hypothetical protein compare
MPMX20_03753 -1.1 -6.6 Tyrosine recombinase XerD compare
MPMX20_04626 -1.1 -3.9 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_00745 -1.1 -4.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_04523 -1.0 -5.8 Acetylornithine deacetylase compare
MPMX20_03882 -1.0 -6.7 Outer membrane protein TolC compare
MPMX20_03681 -1.0 -7.5 Amino-acid acetyltransferase compare
MPMX20_02889 -1.0 -9.1 hypothetical protein compare
MPMX20_03767 -1.0 -4.4 Xaa-Pro aminopeptidase compare
MPMX20_01550 -1.0 -2.0 Thioredoxin reductase compare
MPMX20_01570 -1.0 -2.5 Integration host factor subunit beta compare
MPMX20_01901 -1.0 -1.5 Integration host factor subunit alpha compare
MPMX20_00197 -1.0 -1.5 tRNA-Tyr compare
MPMX20_04640 -1.0 -2.5 Phosphate transport system permease protein PstC compare
MPMX20_03850 -1.0 -3.4 Biopolymer transport protein ExbD compare
MPMX20_00455 -1.0 -7.0 Modulator of FtsH protease HflK compare
MPMX20_04137 -1.0 -3.0 Inner membrane protein YhcB compare
MPMX20_02899 -1.0 -4.7 hypothetical protein compare
MPMX20_02882 -0.9 -8.1 hypothetical protein compare
MPMX20_02472 -0.9 -3.2 Phage shock protein A compare
MPMX20_04670 -0.9 -1.4 hypothetical protein compare
MPMX20_00514 -0.9 -4.9 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_04272 -0.9 -1.5 hypothetical protein compare
MPMX20_04521 -0.9 -5.6 Acetylglutamate kinase compare
MPMX20_01365 -0.9 -2.8 Acyl-CoA thioester hydrolase YbgC compare
MPMX20_04686 -0.9 -3.3 Phospholipase D compare
MPMX20_04301 -0.9 -2.4 Fe/S biogenesis protein NfuA compare
MPMX20_04730 -0.9 -3.7 hypothetical protein compare
MPMX20_00241 -0.9 -6.8 Glucose-6-phosphate isomerase compare
MPMX20_00747 -0.9 -4.5 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_00456 -0.9 -5.3 Modulator of FtsH protease HflC compare
MPMX20_03742 -0.9 -5.2 HTH-type transcriptional regulator GalR compare
MPMX20_02871 -0.8 -6.3 hypothetical protein compare
MPMX20_03923 -0.8 -2.2 hypothetical protein compare
MPMX20_04136 -0.8 -6.6 Cell division protein ZapE compare
MPMX20_04668 -0.8 -2.3 hypothetical protein compare
MPMX20_02925 -0.8 -7.6 hypothetical protein compare
MPMX20_03409 -0.8 -1.8 Iron-binding protein IscA compare
MPMX20_02737 -0.8 -7.3 Tail-specific protease compare
MPMX20_02902 -0.8 -6.2 Serine/threonine-protein phosphatase 1 compare
MPMX20_04731 -0.8 -4.3 Plasmid-derived single-stranded DNA-binding protein compare
MPMX20_03440 -0.8 -3.4 Elongation factor 4 compare
MPMX20_02344 -0.8 -2.4 hypothetical protein compare
MPMX20_03443 -0.8 -2.9 Anti-sigma-E factor RseA compare
MPMX20_02932 -0.8 -3.9 hypothetical protein compare
MPMX20_04465 -0.8 -4.0 Tyrosine recombinase XerC compare
MPMX20_02475 -0.8 -3.5 Putrescine export system permease protein SapB compare
MPMX20_04532 -0.8 -1.7 Met repressor compare
MPMX20_01972 -0.8 -1.5 tRNA-Val compare
MPMX20_03851 -0.8 -5.9 Biopolymer transport protein ExbB compare
MPMX20_02919 -0.8 -4.8 hypothetical protein compare
MPMX20_02903 -0.8 -5.0 hypothetical protein compare
MPMX20_04170 -0.8 -1.8 DNA-binding protein Fis compare
MPMX20_01156 -0.8 -2.9 hypothetical protein compare
MPMX20_01741 -0.8 -3.2 Dihydroorotase compare
MPMX20_01363 -0.8 -3.1 Cytochrome bd-I ubiquinol oxidase subunit X compare
MPMX20_01397 -0.8 -4.8 Formimidoylglutamase compare
MPMX20_02887 -0.8 -5.1 hypothetical protein compare
MPMX20_02931 -0.8 -5.8 hypothetical protein compare
MPMX20_02864 -0.8 -4.5 hypothetical protein compare
MPMX20_01750 -0.7 -4.5 Negative regulator of flagellin synthesis compare
MPMX20_02920 -0.7 -5.7 hypothetical protein compare
MPMX20_00775 -0.7 -2.2 Ribosomal RNA small subunit methyltransferase H compare
MPMX20_02880 -0.7 -6.8 hypothetical protein compare
MPMX20_02021 -0.7 -5.1 Fumarate hydratase class I, aerobic compare
MPMX20_01181 -0.7 -4.0 Putative transferase YhbX compare
MPMX20_02862 -0.7 -6.3 hypothetical protein compare
MPMX20_00749 -0.7 -3.0 Chaperone SurA compare
MPMX20_01765 -0.7 -2.6 Ribonuclease E compare
MPMX20_02457 -0.7 -6.7 Ribose operon repressor compare


Specific Phenotypes

None in this experiment

For Enterobacter sp. TBS_079 in supernatant experiments

For supernatant Supernatant; Bacillus zanthoxyli TBS_040 grown in LB across organisms