Experiment set3S496 for Rhodopseudomonas palustris CGA009

Compare to:

PM_N2O butyrate and Sodium nitrate 0.1 mM

200 most important genes:

  gene name fitness t score description  
TX73_008015 -4.7 -5.6 ribulose bisphosphate carboxylase small subunit compare
TX73_017750 -4.2 -6.3 zinc-finger domain-containing protein compare
TX73_000270 -4.0 -4.8 PTS IIA-like nitrogen regulatory protein PtsN compare
TX73_024675 -4.0 -2.8 FAD-binding protein compare
TX73_008010 -4.0 -10.5 form I ribulose bisphosphate carboxylase large subunit compare
TX73_013955 -4.0 -7.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
TX73_010750 -3.9 -5.4 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
TX73_010730 -3.9 -9.0 uroporphyrinogen-III C-methyltransferase compare
TX73_019180 -3.8 -3.7 methionine synthase compare
TX73_003060 -3.8 -4.5 [protein-PII] uridylyltransferase compare
TX73_022015 -3.8 -9.6 response regulator compare
TX73_010745 -3.8 -7.3 cobalamin biosynthesis protein compare
TX73_021975 -3.8 -6.3 CBS domain-containing protein compare
TX73_023120 -3.7 -9.3 5-formyltetrahydrofolate cyclo-ligase compare
TX73_001320 -3.7 -17.9 NAD(P)-dependent glycerol-3-phosphate dehydrogenase compare
TX73_007730 -3.6 -16.0 DUF3422 domain-containing protein compare
TX73_020815 -3.5 -19.6 hypothetical protein compare
TX73_005330 -3.5 -2.4 electron transfer flavoprotein-ubiquinone oxidoreductase compare
TX73_010740 -3.5 -3.4 precorrin-4 C(11)-methyltransferase compare
TX73_003745 -3.4 -14.1 HoxN/HupN/NixA family nickel/cobalt transporter compare
TX73_010760 -3.4 -4.6 precorrin-3B C(17)-methyltransferase compare
TX73_024775 -3.3 -14.7 O-succinylhomoserine sulfhydrylase compare
TX73_019145 -3.3 -9.6 prephenate dehydratase compare
TX73_018140 -3.2 -3.1 ribbon-helix-helix domain-containing protein compare
TX73_001485 -3.2 -13.0 YggS family pyridoxal phosphate-dependent enzyme compare
TX73_003705 -3.2 -8.3 cobaltochelatase subunit CobN compare
TX73_010775 -3.2 -7.4 hypothetical protein compare
TX73_009330 -3.2 -10.6 DUF1109 domain-containing protein compare
TX73_010805 -3.2 -5.2 precorrin-6A synthase (deacetylating) compare
TX73_013960 -3.1 -4.3 pyridoxine 5'-phosphate synthase compare
TX73_010625 -3.1 -13.2 TAT-dependent nitrous-oxide reductase compare
TX73_018540 -3.1 -17.6 phosphomethylpyrimidine synthase ThiC compare
TX73_010735 -3.1 -5.5 cobyrinate a,c-diamide synthase compare
TX73_010630 -3.1 -10.8 nitrous oxide reductase family maturation protein NosD compare
TX73_024230 -3.1 -3.0 trehalose-phosphatase compare
TX73_010640 -3.1 -10.7 ABC transporter permease subunit compare
TX73_003700 -3.0 -10.1 cobalamin biosynthesis protein CobW compare
TX73_010620 -3.0 -15.4 4Fe-4S binding protein compare
TX73_019200 -3.0 -9.8 ANTAR domain-containing protein compare
TX73_019175 -3.0 -5.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
TX73_008175 -3.0 -16.1 glutamate racemase compare
TX73_007900 -2.9 -15.9 transcriptional regulator PpsR compare
TX73_010650 -2.9 -13.3 FAD:protein FMN transferase compare
TX73_010635 -2.9 -12.8 ABC transporter ATP-binding protein compare
TX73_005110 -2.9 -10.3 histidine phosphatase family protein compare
TX73_008020 -2.8 -8.3 CbbX protein compare
TX73_010770 -2.8 -5.2 precorrin-8X methylmutase compare
TX73_010785 -2.8 -3.2 FAD-dependent tricarballylate dehydrogenase TcuA compare
TX73_010780 -2.7 -5.5 tricarballylate utilization 4Fe-4S protein TcuB compare
TX73_009115 -2.7 -13.8 phosphoenolpyruvate carboxylase compare
TX73_004440 -2.7 -13.6 GTP-binding protein compare
TX73_020255 -2.7 -4.7 RNA polymerase-binding protein DksA compare
TX73_002370 -2.6 -12.0 adenosine kinase compare
TX73_005800 -2.6 -5.9 helix-turn-helix domain containing protein compare
TX73_005530 -2.6 -3.5 FAD-binding oxidoreductase compare
TX73_002750 -2.5 -16.9 acetyl-CoA C-acetyltransferase compare
TX73_003685 -2.5 -14.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
TX73_019275 -2.5 -6.6 branched-chain amino acid ABC transporter permease compare
TX73_015855 -2.5 -4.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
TX73_010765 -2.4 -4.0 precorrin-2 C(20)-methyltransferase compare
TX73_004435 -2.4 -8.5 metal ABC transporter substrate-binding protein compare
TX73_005630 -2.4 -7.7 MBL fold metallo-hydrolase compare
TX73_018875 -2.3 -8.5 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
TX73_003600 -2.3 -8.2 phosphonate metabolism transcriptional regulator PhnF compare
TX73_010755 -2.3 -4.0 cobalt-precorrin-6A reductase compare
TX73_004445 -2.2 -15.8 WD40 repeat domain-containing protein compare
TX73_020625 -2.1 -5.2 NAD-dependent epimerase compare
TX73_018880 -2.1 -13.1 maltose alpha-D-glucosyltransferase compare
TX73_022005 -2.1 -10.5 PAS domain S-box protein compare
TX73_015770 -2.1 -14.1 RNA degradosome polyphosphate kinase compare
TX73_004430 -2.1 -9.4 metal ABC transporter permease compare
TX73_004425 -2.0 -8.9 zinc ABC transporter ATP-binding protein AztA compare
TX73_000395 -2.0 -2.3 nucleotidyltransferase family protein compare
TX73_004935 -2.0 -12.5 acyl-CoA dehydrogenase compare
TX73_021900 -1.9 -13.4 sigma-70 family RNA polymerase sigma factor compare
TX73_019280 -1.9 -4.0 branched-chain amino acid ABC transporter permease compare
TX73_013225 -1.9 -3.3 glycosyltransferase family 2 protein compare
TX73_016180 -1.9 -2.5 50S ribosomal protein L33 compare
TX73_010270 -1.9 -2.5 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_010470 -1.8 -7.5 acetolactate synthase small subunit compare
TX73_016155 -1.7 -5.1 type I DNA topoisomerase compare
TX73_015670 -1.7 -7.4 potassium transporter Kup compare
TX73_009435 -1.7 -10.3 methylmalonyl-CoA mutase compare
TX73_018870 -1.7 -12.9 4-alpha-glucanotransferase compare
TX73_006455 -1.7 -2.2 adenosylcobinamide-GDP ribazoletransferase compare
TX73_019265 -1.7 -3.9 ABC transporter ATP-binding protein compare
TX73_016270 -1.7 -6.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
TX73_009445 -1.6 -11.6 methylmalonyl-CoA mutase subunit beta compare
TX73_002535 -1.6 -8.9 CarD family transcriptional regulator compare
TX73_018685 -1.6 -10.1 trans-aconitate 2-methyltransferase compare
TX73_015520 -1.6 -9.5 proton-conducting transporter membrane subunit compare
TX73_019115 -1.5 -5.0 ABC transporter permease compare
TX73_023115 -1.5 -4.1 TIGR00282 family metallophosphoesterase compare
TX73_010550 -1.5 -10.9 TRAP transporter substrate-binding protein compare
TX73_014750 -1.5 -2.5 Sec-independent protein translocase protein TatB compare
TX73_019285 -1.5 -7.0 ABC transporter substrate-binding protein compare
TX73_015405 -1.5 -7.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
TX73_001460 -1.5 -2.0 outer membrane lipoprotein carrier protein LolA compare
TX73_015525 -1.5 -9.6 DUF2309 domain-containing protein compare
TX73_025030 -1.5 -9.1 HAMP domain-containing sensor histidine kinase compare
TX73_017010 -1.5 -1.9 TetR/AcrR family transcriptional regulator compare
TX73_010555 -1.5 -5.9 TRAP transporter small permease compare
TX73_014280 -1.5 -8.2 hypothetical protein compare
TX73_022875 -1.5 -8.2 TetR/AcrR family transcriptional regulator compare
TX73_003225 -1.5 -3.9 tRNA pseudouridine(38-40) synthase TruA compare
TX73_008645 -1.5 -4.6 response regulator compare
TX73_013420 -1.4 -7.2 nitrogen regulation protein NR(I) compare
TX73_013240 -1.4 -5.9 amino acid ABC transporter substrate-binding protein compare
TX73_002565 -1.4 -11.9 PAS domain S-box protein compare
TX73_010645 -1.4 -3.0 nitrous oxide reductase accessory protein NosL compare
TX73_022130 -1.4 -2.3 DUF1013 domain-containing protein compare
TX73_018340 -1.4 -3.5 N-acetylmuramoyl-L-alanine amidase compare
TX73_019270 -1.4 -6.4 ABC transporter ATP-binding protein compare
TX73_023110 -1.4 -4.0 pyridoxal-dependent decarboxylase compare
TX73_012855 -1.4 -4.1 DedA family protein compare
TX73_000050 -1.3 -5.4 Lrp/AsnC family transcriptional regulator compare
TX73_010305 -1.3 -4.9 GNAT family N-acetyltransferase compare
TX73_017865 -1.3 -6.6 TetR/AcrR family transcriptional regulator compare
TX73_004710 -1.3 -9.3 YqgE/AlgH family protein compare
TX73_004485 -1.3 -9.0 type III PLP-dependent enzyme compare
TX73_013765 -1.3 -6.6 beta-(1-6) glucans synthase compare
TX73_008315 -1.3 -4.5 DUF5413 family protein compare
TX73_010535 -1.2 -7.2 biotin synthase BioB compare
TX73_019780 -1.2 -1.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
TX73_005955 -1.2 -3.2 DUF2093 domain-containing protein compare
TX73_020450 -1.2 -3.6 DUF2147 domain-containing protein compare
TX73_007620 -1.2 -7.3 alpha/beta fold hydrolase compare
TX73_012580 -1.2 -10.2 histidine kinase dimerization/phosphoacceptor domain -containing protein compare
TX73_012480 -1.2 -2.9 ABC transporter ATP-binding protein compare
TX73_003075 -1.2 -4.6 (deoxy)nucleoside triphosphate pyrophosphohydrolase compare
TX73_010560 -1.2 -7.2 TRAP transporter large permease subunit compare
TX73_016325 -1.2 -3.1 hypothetical protein compare
TX73_003125 -1.2 -1.4 aspartate kinase compare
TX73_021890 -1.2 -7.3 response regulator compare
TX73_016420 -1.2 -8.7 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
TX73_022645 -1.1 -8.5 MarR family transcriptional regulator compare
TX73_015515 -1.1 -7.0 LysR family transcriptional regulator compare
TX73_007550 -1.1 -2.1 DUF4089 domain-containing protein compare
TX73_004215 -1.1 -6.6 acetyl-CoA C-acetyltransferase compare
TX73_008530 -1.1 -5.2 hemerythrin domain-containing protein compare
TX73_004665 -1.1 -9.2 N-formylglutamate amidohydrolase compare
TX73_004220 -1.1 -6.8 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein compare
TX73_005115 -1.1 -2.9 cysteine-rich small domain-containing protein compare
TX73_016565 -1.1 -7.2 acyl-CoA carboxylase subunit beta compare
TX73_022860 -1.1 -3.2 glycerol-3-phosphate dehydrogenase compare
TX73_001660 -1.1 -8.5 4-coumaroyl-homoserine lactone synthase compare
TX73_018180 -1.1 -6.1 ABC transporter permease compare
TX73_019665 -1.1 -4.1 XdhC family protein compare
TX73_019935 -1.0 -9.4 aminomethyl-transferring glycine dehydrogenase compare
TX73_001735 -1.0 -1.2 molecular chaperone DnaJ compare
TX73_012510 -1.0 -4.8 porin compare
TX73_013965 -1.0 -1.3 holo-ACP synthase compare
TX73_013760 -1.0 -1.4 beta-1-3, beta-1-6-glucan biosynthesis protein compare
TX73_009305 -1.0 -5.1 hypothetical protein compare
TX73_008465 -1.0 -5.3 alpha/beta hydrolase compare
TX73_024670 -1.0 -4.4 3-hydroxybutyryl-CoA dehydrogenase compare
TX73_005675 -1.0 -5.5 NAD(P)/FAD-dependent oxidoreductase compare
TX73_010095 -1.0 -4.1 TetR/AcrR family transcriptional regulator compare
TX73_018175 -1.0 -5.9 ABC transporter ATP-binding protein compare
TX73_015205 -1.0 -5.6 methylmalonyl-CoA epimerase compare
TX73_006140 -1.0 -7.2 SDR family NAD(P)-dependent oxidoreductase compare
TX73_012445 -1.0 -1.0 hypothetical protein compare
TX73_007005 -1.0 -3.2 ABC transporter ATP-binding protein compare
TX73_019685 -0.9 -5.5 xanthine dehydrogenase family protein subunit M compare
TX73_015380 -0.9 -7.9 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
TX73_011820 -0.9 -6.8 peptide chain release factor 3 compare
TX73_012935 -0.9 -3.7 LL-diaminopimelate aminotransferase compare
TX73_019120 -0.9 -2.9 microcin C ABC transporter permease YejB compare
TX73_022570 -0.9 -3.0 redox-regulated ATPase YchF compare
TX73_000890 -0.9 -5.2 RNA pyrophosphohydrolase compare
TX73_001665 -0.9 -7.6 HTH-type quorum sensing-dependent transcriptional regulator RpaR compare
TX73_004190 -0.9 -6.4 sulfite exporter TauE/SafE family protein compare
TX73_019930 -0.9 -5.6 glycine cleavage system protein GcvH compare
TX73_019925 -0.9 -7.6 glycine cleavage system aminomethyltransferase GcvT compare
TX73_024750 -0.9 -4.4 tRNA-Gly compare
TX73_021860 -0.9 -1.9 CsbD family protein compare
TX73_003595 -0.8 -4.1 phosphonate C-P lyase system protein PhnG compare
TX73_001655 -0.8 -5.4 hypothetical protein compare
TX73_022470 -0.8 -5.2 aldo/keto reductase compare
TX73_015415 -0.8 -4.8 8-amino-7-oxononanoate synthase compare
TX73_007615 -0.8 -4.7 response regulator compare
TX73_015680 -0.8 -1.8 DUF1328 domain-containing protein compare
TX73_007000 -0.8 -4.6 ABC transporter permease compare
TX73_006135 -0.8 -4.5 hypothetical protein compare
TX73_018220 -0.8 -5.4 aminopeptidase P family protein compare
TX73_013920 -0.8 -5.0 4-hydroxy-tetrahydrodipicolinate synthase compare
TX73_021060 -0.8 -4.7 hypothetical protein compare
TX73_013835 -0.7 -2.4 heat shock protein HspQ compare
TX73_001825 -0.7 -4.5 translation elongation factor 4 compare
TX73_009780 -0.7 -2.8 DUF3168 domain-containing protein compare
TX73_013790 -0.7 -4.4 DUF502 domain-containing protein compare
TX73_020290 -0.7 -1.7 flagellar biosynthesis repressor FlbT compare
TX73_012070 -0.7 -2.0 YtxH domain-containing protein compare
TX73_015765 -0.7 -4.5 exopolyphosphatase compare
TX73_002300 -0.7 -1.3 helix-turn-helix domain-containing protein compare
TX73_024295 -0.7 -2.1 DUF2783 domain-containing protein compare
TX73_023355 -0.7 -3.3 hypothetical protein compare
TX73_019110 -0.7 -2.6 ABC transporter ATP-binding protein compare
TX73_015410 -0.7 -2.2 dethiobiotin synthase compare
TX73_018070 -0.7 -3.1 DUF2065 domain-containing protein compare


Specific Phenotypes

For 18 genes in this experiment

For stress Sodium butyrate in Rhodopseudomonas palustris CGA009

For stress Sodium butyrate across organisms