Experiment set3S496 for Rhodopseudomonas palustris CGA009

Compare to:

PM_N2O butyrate and Sodium nitrate 0.1 mM

Group: stress
Media: PM_N2O + Sodium butyrate (10 mM) + Sodium nitrate (0.1 mM) + Light intensity (12 µmol photons/m2/s from a 60-W incandescent light bulb)
Culturing: RPal_CGA009_ML8, tube, Anaerobic, at 30 (C)
By: Rpal_McKinlay on 9/8/24
Media components: 12.5 mM Disodium phosphate, 12.5 mM Potassium phosphate monobasic, 1 g/L Ammonium Sulfate, 0.1 mM Sodium thiosulfate pentahydrate, 0.002 g/L 4-Aminobenzoic acid, UW concentrated base (0.02 g/L Nitrilotriacetic acid, 0.0289 g/L Magnesium sulfate, 0.00667 g/L Calcium chloride dihydrate, 1.85e-05 g/L ammonium molybdate tetrahydrate, 0.000698 g/L Iron (II) sulfate heptahydrate, 0.00025 g/L EDTA, 0.001095 g/L Zinc sulfate heptahydrate, 0.000154 g/L Manganese (II) sulfate monohydrate, 3.92e-05 g/L Copper (II) sulfate pentahydrate, 2.5e-05 g/L Cobalt(II) nitrate hexahydrate, 1.77e-05 g/L sodium tetraborate decahydrate)

Specific Phenotypes

For 18 genes in this experiment

For stress Sodium butyrate in Rhodopseudomonas palustris CGA009

For stress Sodium butyrate across organisms

SEED Subsystems

Subsystem #Specific
CO2 uptake, carboxysome 2
Cobalamin synthesis 2
Coenzyme B12 biosynthesis 2
Multidrug Resistance Efflux Pumps 2
Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) 2
Respiratory Complex I 2
Alkylphosphonate utilization 1
Carboxysome 1
TCA Cycle 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
benzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 2
adenosylcobalamin biosynthesis from adenosylcobinamide-GDP I 3 3 2
5-methoxy-6-methylbenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 2
5-hydroxybenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 2
adeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 2
2-methyladeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 2
5-methoxybenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 2
5-methylbenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 3 2
phenyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 2 1
4-methylphenyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 2 1
superpathway of adenosylcobalamin salvage from cobinamide I 8 8 2
adenosylcobalamin biosynthesis from adenosylcobinamide-GDP II 4 2 1
superpathway of adenosylcobalamin salvage from cobinamide II 9 8 2
adenosylcobalamin biosynthesis II (aerobic) 33 29 2
adenosylcobalamin biosynthesis I (anaerobic) 36 25 2