Experiment set3S474 for Lysobacter sp. OAE881

Compare to:

Ying_Others16 rep C; time point 1

200 most important genes:

  gene name fitness t score description  
ABIE51_RS14555 -3.2 -3.0 M15 family metallopeptidase compare
ABIE51_RS09365 -2.9 -4.3 glycosyltransferase family 4 protein compare
ABIE51_RS02280 -2.8 -7.8 CDP-glycerol glycerophosphotransferase family protein compare
ABIE51_RS02265 -2.7 -3.3 glycosyltransferase family 2 protein compare
ABIE51_RS15620 -2.7 -7.9 dTDP-glucose 4,6-dehydratase compare
ABIE51_RS09425 -2.5 -1.7 helix-turn-helix domain-containing protein compare
ABIE51_RS04310 -2.5 -4.1 glycosyltransferase compare
ABIE51_RS17190 -2.3 -3.5 penicillin-binding protein 1A compare
ABIE51_RS14070 -2.2 -5.3 glycosyltransferase family 9 protein compare
ABIE51_RS16260 -2.2 -3.5 hypothetical protein compare
ABIE51_RS09065 -2.1 -9.6 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE51_RS09375 -1.9 -9.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABIE51_RS03185 -1.9 -8.6 carboxy terminal-processing peptidase compare
ABIE51_RS17630 -1.8 -5.9 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase compare
ABIE51_RS15615 -1.8 -6.9 glucose-1-phosphate thymidylyltransferase RfbA compare
ABIE51_RS05180 -1.8 -5.6 glycosyltransferase compare
ABIE51_RS02300 -1.6 -4.4 lauroyl acyltransferase compare
ABIE51_RS02785 -1.6 -1.8 DUF2946 family protein compare
ABIE51_RS03160 -1.5 -10.8 septal ring lytic transglycosylase RlpA family protein compare
ABIE51_RS15965 -1.5 -2.3 PTS sugar transporter subunit IIA compare
ABIE51_RS09370 -1.5 -10.1 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABIE51_RS17665 -1.4 -1.8 mitochondrial fission ELM1 family protein compare
ABIE51_RS03935 -1.4 -4.6 hypothetical protein compare
ABIE51_RS16395 -1.3 -1.4 PDZ domain-containing protein compare
ABIE51_RS11835 -1.3 -1.9 transcriptional repressor LexA compare
ABIE51_RS04370 -1.3 -6.9 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABIE51_RS00635 -1.3 -4.5 hybrid sensor histidine kinase/response regulator compare
ABIE51_RS04390 -1.3 -6.7 glycoside hydrolase family 99-like domain-containing protein compare
ABIE51_RS18545 -1.2 -1.4 DUF6249 domain-containing protein compare
ABIE51_RS13050 -1.2 -1.3 hypothetical protein compare
ABIE51_RS07575 -1.2 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase N-terminal domain-containing protein compare
ABIE51_RS09045 -1.2 -3.4 GntR family transcriptional regulator compare
ABIE51_RS14085 -1.2 -1.3 DUF6165 family protein compare
ABIE51_RS06810 -1.1 -2.7 DUF4870 domain-containing protein compare
ABIE51_RS06180 -1.1 -4.1 amidophosphoribosyltransferase compare
ABIE51_RS13300 -1.1 -3.5 imidazole glycerol phosphate synthase subunit HisF compare
ABIE51_RS06595 -1.1 -1.2 MGMT family protein compare
ABIE51_RS16485 -1.1 -1.5 adenosylhomocysteinase compare
ABIE51_RS18995 -1.0 -4.6 alpha-glucosidase family protein compare
ABIE51_RS18715 -1.0 -1.4 DUF2784 domain-containing protein compare
ABIE51_RS15660 -1.0 -1.0 PhzF family phenazine biosynthesis protein compare
ABIE51_RS10670 -1.0 -0.9 LysR family transcriptional regulator compare
ABIE51_RS00270 -1.0 -2.5 DUF4156 domain-containing protein compare
ABIE51_RS05540 -1.0 -1.3 hypothetical protein compare
ABIE51_RS05295 -1.0 -3.0 response regulator transcription factor compare
ABIE51_RS01280 -1.0 -3.1 lipid-binding SYLF domain-containing protein compare
ABIE51_RS05045 -1.0 -1.2 Holliday junction branch migration protein RuvA compare
ABIE51_RS09090 -0.9 -2.9 homocysteine S-methyltransferase family protein compare
ABIE51_RS11515 -0.9 -3.0 high frequency lysogenization protein HflD compare
ABIE51_RS04620 -0.9 -6.1 serine hydroxymethyltransferase compare
ABIE51_RS06340 -0.9 -5.7 hypothetical protein compare
ABIE51_RS06500 -0.9 -2.6 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS09085 -0.9 -5.1 methionine synthase compare
ABIE51_RS13480 -0.9 -1.8 phytoene/squalene synthase family protein compare
ABIE51_RS15870 -0.9 -3.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABIE51_RS17770 -0.9 -1.8 phosphoribosylamine--glycine ligase compare
ABIE51_RS11855 -0.8 -1.7 hypothetical protein compare
ABIE51_RS04505 -0.8 -4.0 phosphoribosylformylglycinamidine synthase compare
ABIE51_RS05660 -0.8 -1.2 helix-turn-helix domain-containing protein compare
ABIE51_RS15035 -0.8 -4.6 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABIE51_RS13305 -0.8 -1.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE51_RS19030 -0.8 -3.9 endonuclease/exonuclease/phosphatase family protein compare
ABIE51_RS14090 -0.8 -3.0 PP2C family serine/threonine-protein phosphatase compare
ABIE51_RS04125 -0.8 -2.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE51_RS10620 -0.8 -1.5 response regulator transcription factor compare
ABIE51_RS06535 -0.8 -4.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABIE51_RS15855 -0.8 -2.6 siroheme synthase CysG compare
ABIE51_RS16525 -0.8 -2.4 RimK/LysX family protein compare
ABIE51_RS10115 -0.8 -1.0 NADH-quinone oxidoreductase subunit K compare
ABIE51_RS05275 -0.8 -3.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABIE51_RS03275 -0.7 -1.3 hypothetical protein compare
ABIE51_RS04210 -0.7 -4.9 cAMP-activated global transcriptional regulator CRP compare
ABIE51_RS04885 -0.7 -2.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
ABIE51_RS04990 -0.7 -1.8 YceH family protein compare
ABIE51_RS16420 -0.7 -2.9 TMEM165/GDT1 family protein compare
ABIE51_RS03960 -0.7 -0.7 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA compare
ABIE51_RS18520 -0.7 -1.4 hypothetical protein compare
ABIE51_RS04105 -0.7 -2.5 hypothetical protein compare
ABIE51_RS16815 -0.7 -4.4 flagellar motor switch protein FliM compare
ABIE51_RS16510 -0.7 -3.8 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS01845 -0.7 -2.9 sulfate ABC transporter permease subunit CysW compare
ABIE51_RS15030 -0.7 -2.9 Lrp/AsnC family transcriptional regulator compare
ABIE51_RS06980 -0.7 -1.0 [protein-PII] uridylyltransferase compare
ABIE51_RS08250 -0.7 -1.7 phosphoribosylanthranilate isomerase compare
ABIE51_RS04835 -0.7 -4.3 glycosyltransferase family 2 protein compare
ABIE51_RS13315 -0.7 -1.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABIE51_RS02085 -0.7 -2.5 cell division ATP-binding protein FtsE compare
ABIE51_RS13405 -0.6 -3.3 argininosuccinate synthase compare
ABIE51_RS16785 -0.6 -1.6 flagellar motor switch protein FliG compare
ABIE51_RS03945 -0.6 -4.8 ATP-binding protein compare
ABIE51_RS10980 -0.6 -1.8 AI-2E family transporter compare
ABIE51_RS05175 -0.6 -3.0 hypothetical protein compare
ABIE51_RS01355 -0.6 -1.0 superoxide dismutase family protein compare
ABIE51_RS14050 -0.6 -1.3 cyclic pyranopterin monophosphate synthase MoaC compare
ABIE51_RS08885 -0.6 -0.9 cell division protein ZipA compare
ABIE51_RS13320 -0.6 -3.1 histidinol-phosphate transaminase compare
ABIE51_RS13410 -0.6 -4.0 N-acetylornithine carbamoyltransferase compare
ABIE51_RS17715 -0.6 -2.9 type II 3-dehydroquinate dehydratase compare
ABIE51_RS14540 -0.6 -1.1 hypothetical protein compare
ABIE51_RS04180 -0.6 -2.8 anthranilate phosphoribosyltransferase compare
ABIE51_RS11490 -0.6 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE51_RS03165 -0.6 -5.4 D-alanyl-D-alanine carboxypeptidase family protein compare
ABIE51_RS17635 -0.6 -2.9 O-antigen ligase compare
ABIE51_RS11040 -0.6 -2.3 hypothetical protein compare
ABIE51_RS16065 -0.6 -2.2 pyrroline-5-carboxylate reductase compare
ABIE51_RS05190 -0.6 -0.9 tetratricopeptide repeat protein compare
ABIE51_RS15820 -0.6 -3.8 sulfate adenylyltransferase subunit CysD compare
ABIE51_RS03940 -0.6 -2.8 response regulator transcription factor compare
ABIE51_RS09360 -0.6 -4.2 lipopolysaccharide assembly protein LapB compare
ABIE51_RS15440 -0.6 -1.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE51_RS17255 -0.6 -1.6 YkvA family protein compare
ABIE51_RS05975 -0.5 -2.8 class II 3-deoxy-7-phosphoheptulonate synthase compare
ABIE51_RS13420 -0.5 -3.9 hypothetical protein compare
ABIE51_RS16840 -0.5 -3.3 flagellar biosynthetic protein FliR compare
ABIE51_RS02450 -0.5 -1.2 MarR family transcriptional regulator compare
ABIE51_RS02090 -0.5 -2.9 permease-like cell division protein FtsX compare
ABIE51_RS16650 -0.5 -1.9 flagellar protein FlgN compare
ABIE51_RS02110 -0.5 -2.6 DUF1203 domain-containing protein compare
ABIE51_RS17575 -0.5 -1.7 3-isopropylmalate dehydratase large subunit compare
ABIE51_RS17075 -0.5 -1.8 DUF4019 domain-containing protein compare
ABIE51_RS10470 -0.5 -3.2 SMP-30/gluconolactonase/LRE family protein compare
ABIE51_RS16760 -0.5 -2.1 RNA polymerase factor sigma-54 compare
ABIE51_RS05420 -0.5 -2.5 DUF6580 family putative transport protein compare
ABIE51_RS19215 -0.5 -4.4 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA compare
ABIE51_RS00065 -0.5 -1.6 orotate phosphoribosyltransferase compare
ABIE51_RS04710 -0.5 -0.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABIE51_RS09450 -0.5 -2.5 gephyrin-like molybdotransferase Glp compare
ABIE51_RS16675 -0.5 -3.0 flagellar basal body rod protein FlgC compare
ABIE51_RS01000 -0.5 -3.8 ABC transporter substrate-binding protein compare
ABIE51_RS15830 -0.5 -2.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABIE51_RS09230 -0.5 -1.4 50S ribosomal protein L9 compare
ABIE51_RS08175 -0.5 -2.4 transcription elongation factor GreB compare
ABIE51_RS06905 -0.5 -2.6 RIP metalloprotease RseP compare
ABIE51_RS04825 -0.5 -2.7 pilin compare
ABIE51_RS17530 -0.5 -3.4 threonine synthase compare
ABIE51_RS03135 -0.5 -2.1 rod shape-determining protein MreC compare
ABIE51_RS04245 -0.5 -1.5 fumarylacetoacetate hydrolase family protein compare
ABIE51_RS06550 -0.5 -3.2 FtsH protease activity modulator HflK compare
ABIE51_RS14800 -0.5 -1.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
ABIE51_RS09005 -0.5 -2.8 VOC family protein compare
ABIE51_RS17505 -0.5 -4.1 winged helix-turn-helix domain-containing protein compare
ABIE51_RS06785 -0.5 -3.7 ribonuclease G compare
ABIE51_RS04190 -0.5 -1.4 indole-3-glycerol phosphate synthase TrpC compare
ABIE51_RS16780 -0.5 -3.6 flagellar basal-body MS-ring/collar protein FliF compare
ABIE51_RS17440 -0.5 -4.1 bifunctional DedA family/phosphatase PAP2 family protein compare
ABIE51_RS11615 -0.5 -3.1 carbamoyl-phosphate synthase large subunit compare
ABIE51_RS02585 -0.5 -1.4 SDR family oxidoreductase compare
ABIE51_RS06800 -0.5 -0.5 ribosome biogenesis factor YjgA compare
ABIE51_RS02525 -0.5 -3.6 DUF1365 domain-containing protein compare
ABIE51_RS08780 -0.5 -2.5 SMC-Scp complex subunit ScpB compare
ABIE51_RS07890 -0.5 -2.3 YdcF family protein compare
ABIE51_RS15865 -0.5 -1.7 phosphotransferase compare
ABIE51_RS15240 -0.5 -0.8 integration host factor subunit alpha compare
ABIE51_RS17495 -0.5 -4.5 TonB-dependent receptor compare
ABIE51_RS04385 -0.5 -1.1 CoA transferase subunit B compare
ABIE51_RS00990 -0.5 -3.5 VacJ family lipoprotein compare
ABIE51_RS17760 -0.5 -1.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE51_RS07405 -0.5 -1.4 polysaccharide pyruvyl transferase family protein compare
ABIE51_RS01015 -0.5 -2.4 ABC transporter ATP-binding protein compare
ABIE51_RS00035 -0.5 -4.2 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS17035 -0.5 -4.0 class I fructose-bisphosphate aldolase compare
ABIE51_RS05995 -0.5 -1.3 peptidylprolyl isomerase compare
ABIE51_RS04570 -0.5 -0.7 general secretion pathway protein GspN compare
ABIE51_RS13260 -0.5 -3.2 amino acid permease compare
ABIE51_RS03310 -0.5 -2.2 hypothetical protein compare
ABIE51_RS17550 -0.5 -1.8 acetolactate synthase 2 catalytic subunit compare
ABIE51_RS00250 -0.5 -1.8 olefin beta-lactone synthetase compare
ABIE51_RS02745 -0.5 -1.2 hypothetical protein compare
ABIE51_RS01035 -0.5 -1.4 phytochelatin synthase family protein compare
ABIE51_RS08165 -0.5 -1.0 DUF4010 domain-containing protein compare
ABIE51_RS08210 -0.5 -2.5 SCO family protein compare
ABIE51_RS03155 -0.5 -3.9 lytic murein transglycosylase B compare
ABIE51_RS01840 -0.5 -2.0 sulfate/molybdate ABC transporter ATP-binding protein compare
ABIE51_RS01855 -0.5 -2.2 sulfate ABC transporter substrate-binding protein compare
ABIE51_RS10480 -0.5 -0.8 helix-turn-helix domain-containing protein compare
ABIE51_RS17585 -0.5 -2.5 3-isopropylmalate dehydrogenase compare
ABIE51_RS01045 -0.5 -1.4 hypothetical protein compare
ABIE51_RS10200 -0.4 -1.6 SpoIIE family protein phosphatase compare
ABIE51_RS11110 -0.4 -1.5 molybdate ABC transporter substrate-binding protein compare
ABIE51_RS11105 -0.4 -1.8 hypothetical protein compare
ABIE51_RS15885 -0.4 -1.3 DUF2066 domain-containing protein compare
ABIE51_RS11115 -0.4 -1.2 molybdate ABC transporter permease subunit compare
ABIE51_RS02700 -0.4 -1.3 hypothetical protein compare
ABIE51_RS15850 -0.4 -2.8 LysR family transcriptional regulator compare
ABIE51_RS15725 -0.4 -0.6 SUF system Fe-S cluster assembly regulator compare
ABIE51_RS17535 -0.4 -2.4 hypothetical protein compare
ABIE51_RS00725 -0.4 -2.5 energy transducer TonB compare
ABIE51_RS13240 -0.4 -1.7 FAD-binding oxidoreductase compare
ABIE51_RS13385 -0.4 -1.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE51_RS13310 -0.4 -1.3 imidazole glycerol phosphate synthase subunit HisH compare
ABIE51_RS15015 -0.4 -0.9 preprotein translocase subunit YajC compare
ABIE51_RS10830 -0.4 -0.9 MBL fold metallo-hydrolase compare
ABIE51_RS13540 -0.4 -2.1 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
ABIE51_RS16075 -0.4 -1.8 cobalamin-binding protein compare
ABIE51_RS10820 -0.4 -1.5 PAS domain-containing sensor histidine kinase compare
ABIE51_RS16490 -0.4 -2.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE51_RS14600 -0.4 -2.7 GNAT family N-acetyltransferase compare
ABIE51_RS10030 -0.4 -1.5 TorF family putative porin compare
ABIE51_RS00550 -0.4 -1.8 LytTR family DNA-binding domain-containing protein compare
ABIE51_RS15825 -0.4 -2.5 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare


Specific Phenotypes

None in this experiment

For Lysobacter sp. OAE881 in carbon source experiments

For carbon source Ying_Others16 across organisms