Experiment set3S469 for Lysobacter sp. OAE881

Compare to:

Ying_Nucleobase14 rep A; time point 1

200 most important genes:

  gene name fitness t score description  
ABIE51_RS14555 -3.9 -2.7 M15 family metallopeptidase compare
ABIE51_RS14085 -3.6 -3.5 DUF6165 family protein compare
ABIE51_RS16395 -3.1 -2.9 PDZ domain-containing protein compare
ABIE51_RS14070 -2.6 -6.4 glycosyltransferase family 9 protein compare
ABIE51_RS17630 -2.5 -7.4 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase compare
ABIE51_RS15620 -2.4 -6.9 dTDP-glucose 4,6-dehydratase compare
ABIE51_RS17190 -2.3 -3.8 penicillin-binding protein 1A compare
ABIE51_RS09365 -2.3 -4.3 glycosyltransferase family 4 protein compare
ABIE51_RS09065 -2.3 -11.4 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE51_RS04805 -2.1 -2.7 A24 family peptidase compare
ABIE51_RS09375 -2.0 -10.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABIE51_RS06500 -2.0 -5.1 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS04390 -1.9 -9.1 glycoside hydrolase family 99-like domain-containing protein compare
ABIE51_RS09425 -1.8 -2.0 helix-turn-helix domain-containing protein compare
ABIE51_RS15615 -1.8 -9.6 glucose-1-phosphate thymidylyltransferase RfbA compare
ABIE51_RS03185 -1.7 -8.2 carboxy terminal-processing peptidase compare
ABIE51_RS17665 -1.7 -3.4 mitochondrial fission ELM1 family protein compare
ABIE51_RS05295 -1.7 -4.7 response regulator transcription factor compare
ABIE51_RS04370 -1.7 -7.9 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABIE51_RS02300 -1.7 -4.7 lauroyl acyltransferase compare
ABIE51_RS00635 -1.6 -4.7 hybrid sensor histidine kinase/response regulator compare
ABIE51_RS02280 -1.6 -6.0 CDP-glycerol glycerophosphotransferase family protein compare
ABIE51_RS06595 -1.5 -1.5 MGMT family protein compare
ABIE51_RS09370 -1.5 -11.2 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABIE51_RS03160 -1.4 -10.9 septal ring lytic transglycosylase RlpA family protein compare
ABIE51_RS04310 -1.4 -3.5 glycosyltransferase compare
ABIE51_RS00800 -1.4 -1.5 biopolymer transporter ExbD compare
ABIE51_RS07130 -1.4 -6.5 hypothetical protein compare
ABIE51_RS02265 -1.3 -3.4 glycosyltransferase family 2 protein compare
ABIE51_RS04710 -1.3 -1.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABIE51_RS09360 -1.3 -10.0 lipopolysaccharide assembly protein LapB compare
ABIE51_RS06905 -1.3 -5.9 RIP metalloprotease RseP compare
ABIE51_RS07110 -1.3 -3.1 hypothetical protein compare
ABIE51_RS16820 -1.2 -6.2 flagellar motor switch protein FliN compare
ABIE51_RS16260 -1.2 -2.1 hypothetical protein compare
ABIE51_RS18545 -1.1 -1.8 DUF6249 domain-containing protein compare
ABIE51_RS04105 -1.1 -3.7 hypothetical protein compare
ABIE51_RS00990 -1.1 -7.7 VacJ family lipoprotein compare
ABIE51_RS13885 -1.1 -2.6 sigma-E factor negative regulatory protein compare
ABIE51_RS01000 -1.1 -7.0 ABC transporter substrate-binding protein compare
ABIE51_RS04210 -1.1 -8.1 cAMP-activated global transcriptional regulator CRP compare
ABIE51_RS11515 -1.1 -3.5 high frequency lysogenization protein HflD compare
ABIE51_RS07575 -1.0 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerase N-terminal domain-containing protein compare
ABIE51_RS02575 -1.0 -1.3 HlyD family secretion protein compare
ABIE51_RS05180 -1.0 -4.3 glycosyltransferase compare
ABIE51_RS01280 -1.0 -2.8 lipid-binding SYLF domain-containing protein compare
ABIE51_RS08165 -1.0 -2.3 DUF4010 domain-containing protein compare
ABIE51_RS14165 -1.0 -3.5 tRNA-Leu compare
ABIE51_RS04190 -1.0 -2.4 indole-3-glycerol phosphate synthase TrpC compare
ABIE51_RS17640 -0.9 -6.3 glycosyltransferase compare
ABIE51_RS03940 -0.9 -4.4 response regulator transcription factor compare
ABIE51_RS18995 -0.9 -4.6 alpha-glucosidase family protein compare
ABIE51_RS16795 -0.9 -6.0 flagellar protein export ATPase FliI compare
ABIE51_RS06110 -0.9 -6.7 OmpA family protein compare
ABIE51_RS16095 -0.9 -1.5 shikimate kinase compare
ABIE51_RS18515 -0.9 -1.3 tRNA-Leu compare
ABIE51_RS15885 -0.9 -2.4 DUF2066 domain-containing protein compare
ABIE51_RS16120 -0.9 -1.9 YceI family protein compare
ABIE51_RS01010 -0.9 -5.6 MlaE family lipid ABC transporter permease subunit compare
ABIE51_RS16845 -0.9 -6.1 flagellar biosynthesis protein FlhB compare
ABIE51_RS18715 -0.8 -1.3 DUF2784 domain-containing protein compare
ABIE51_RS03935 -0.8 -3.5 hypothetical protein compare
ABIE51_RS06170 -0.8 -1.5 SPOR domain-containing protein compare
ABIE51_RS16790 -0.8 -4.9 FliH/SctL family protein compare
ABIE51_RS06550 -0.8 -5.2 FtsH protease activity modulator HflK compare
ABIE51_RS07160 -0.8 -5.8 hypothetical protein compare
ABIE51_RS16815 -0.8 -5.9 flagellar motor switch protein FliM compare
ABIE51_RS07165 -0.8 -4.5 DnaB-like helicase C-terminal domain-containing protein compare
ABIE51_RS07005 -0.8 -3.7 asparagine synthase B compare
ABIE51_RS06105 -0.8 -4.8 OmpA family protein compare
ABIE51_RS16785 -0.8 -1.4 flagellar motor switch protein FliG compare
ABIE51_RS16865 -0.7 -4.2 RNA polymerase sigma factor FliA compare
ABIE51_RS16760 -0.7 -3.3 RNA polymerase factor sigma-54 compare
ABIE51_RS06070 -0.7 -1.7 fructosamine kinase family protein compare
ABIE51_RS07390 -0.7 -1.3 glycosyl hydrolase compare
ABIE51_RS04245 -0.7 -2.4 fumarylacetoacetate hydrolase family protein compare
ABIE51_RS16830 -0.7 -5.2 flagellar type III secretion system pore protein FliP compare
ABIE51_RS07990 -0.7 -3.8 glycine cleavage system protein R compare
ABIE51_RS01015 -0.7 -4.0 ABC transporter ATP-binding protein compare
ABIE51_RS09105 -0.7 -2.5 NAD-glutamate dehydrogenase domain-containing protein compare
ABIE51_RS16840 -0.7 -4.0 flagellar biosynthetic protein FliR compare
ABIE51_RS11115 -0.7 -1.8 molybdate ABC transporter permease subunit compare
ABIE51_RS16780 -0.7 -4.9 flagellar basal-body MS-ring/collar protein FliF compare
ABIE51_RS04690 -0.7 -1.2 penicillin-binding protein activator compare
ABIE51_RS16850 -0.7 -5.9 flagellar biosynthesis protein FlhA compare
ABIE51_RS17635 -0.7 -3.3 O-antigen ligase compare
ABIE51_RS12425 -0.7 -5.3 nucleotide sugar dehydrogenase compare
ABIE51_RS06000 -0.7 -4.5 pyridoxal phosphate-dependent aminotransferase compare
ABIE51_RS06430 -0.7 -1.4 hypothetical protein compare
ABIE51_RS12110 -0.7 -1.9 LysR family transcriptional regulator compare
ABIE51_RS01005 -0.7 -6.2 outer membrane lipid asymmetry maintenance protein MlaD compare
ABIE51_RS10250 -0.7 -1.4 YetF domain-containing protein compare
ABIE51_RS10645 -0.7 -0.8 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein compare
ABIE51_RS14090 -0.7 -3.4 PP2C family serine/threonine-protein phosphatase compare
ABIE51_RS16510 -0.7 -3.3 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS04290 -0.7 -5.9 UDP-glucose 4-epimerase GalE compare
ABIE51_RS08690 -0.7 -1.8 cytochrome c-type biogenesis protein compare
ABIE51_RS16370 -0.6 -0.8 hypothetical protein compare
ABIE51_RS04825 -0.6 -3.9 pilin compare
ABIE51_RS17495 -0.6 -6.1 TonB-dependent receptor compare
ABIE51_RS10480 -0.6 -1.1 helix-turn-helix domain-containing protein compare
ABIE51_RS09205 -0.6 -0.9 BON domain-containing protein compare
ABIE51_RS16800 -0.6 -3.3 flagellar export protein FliJ compare
ABIE51_RS08435 -0.6 -1.3 hypothetical protein compare
ABIE51_RS10725 -0.6 -2.1 penicillin-binding protein activator LpoB compare
ABIE51_RS15575 -0.6 -0.9 DUF4123 domain-containing protein compare
ABIE51_RS10795 -0.6 -2.9 cytochrome C oxidase subunit III compare
ABIE51_RS16970 -0.6 -0.7 sensor histidine kinase compare
ABIE51_RS07055 -0.6 -3.3 hypothetical protein compare
ABIE51_RS06340 -0.6 -3.2 hypothetical protein compare
ABIE51_RS07090 -0.6 -3.2 recombination protein NinB compare
ABIE51_RS04125 -0.6 -2.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE51_RS10115 -0.6 -1.9 NADH-quinone oxidoreductase subunit K compare
ABIE51_RS16685 -0.6 -5.0 flagellar hook protein FlgE compare
ABIE51_RS09045 -0.6 -2.1 GntR family transcriptional regulator compare
ABIE51_RS14825 -0.6 -2.1 aldo/keto reductase compare
ABIE51_RS05660 -0.6 -1.0 helix-turn-helix domain-containing protein compare
ABIE51_RS10560 -0.6 -2.8 alpha/beta fold hydrolase compare
ABIE51_RS19080 -0.6 -2.0 PH domain-containing protein compare
ABIE51_RS11685 -0.5 -4.4 CHASE domain-containing protein compare
ABIE51_RS15660 -0.5 -0.7 PhzF family phenazine biosynthesis protein compare
ABIE51_RS06535 -0.5 -3.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABIE51_RS06960 -0.5 -4.7 TonB-dependent receptor compare
ABIE51_RS08170 -0.5 -1.4 GNAT family N-acetyltransferase compare
ABIE51_RS15755 -0.5 -1.4 non-heme iron oxygenase ferredoxin subunit compare
ABIE51_RS06980 -0.5 -0.9 [protein-PII] uridylyltransferase compare
ABIE51_RS08780 -0.5 -2.6 SMC-Scp complex subunit ScpB compare
ABIE51_RS02055 -0.5 -2.1 ankyrin repeat domain-containing protein compare
ABIE51_RS13320 -0.5 -2.2 histidinol-phosphate transaminase compare
ABIE51_RS00995 -0.5 -1.4 STAS domain-containing protein compare
ABIE51_RS17500 -0.5 -3.9 helix-turn-helix domain-containing protein compare
ABIE51_RS01355 -0.5 -1.2 superoxide dismutase family protein compare
ABIE51_RS05540 -0.5 -0.9 hypothetical protein compare
ABIE51_RS17505 -0.5 -4.1 winged helix-turn-helix domain-containing protein compare
ABIE51_RS07050 -0.5 -2.0 hypothetical protein compare
ABIE51_RS17550 -0.5 -1.4 acetolactate synthase 2 catalytic subunit compare
ABIE51_RS14060 -0.5 -2.2 MBL fold metallo-hydrolase compare
ABIE51_RS01645 -0.5 -1.5 MmcQ/YjbR family DNA-binding protein compare
ABIE51_RS13390 -0.5 -1.3 GNAT family N-acetyltransferase compare
ABIE51_RS05175 -0.5 -2.6 hypothetical protein compare
ABIE51_RS04505 -0.5 -2.0 phosphoribosylformylglycinamidine synthase compare
ABIE51_RS19260 -0.5 -3.7 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS14700 -0.5 -0.8 response regulator compare
ABIE51_RS09595 -0.5 -2.4 CorA family divalent cation transporter compare
ABIE51_RS00785 -0.5 -2.4 energy transducer TonB compare
ABIE51_RS06490 -0.5 -2.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABIE51_RS05300 -0.5 -2.5 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS16705 -0.5 -2.1 flagellar basal body P-ring protein FlgI compare
ABIE51_RS02990 -0.5 -3.9 molybdopterin oxidoreductase family protein compare
ABIE51_RS03050 -0.5 -2.6 OsmC family protein compare
ABIE51_RS02230 -0.5 -2.9 DUF494 family protein compare
ABIE51_RS06990 -0.5 -1.6 Spx/MgsR family RNA polymerase-binding regulatory protein compare
ABIE51_RS16710 -0.5 -3.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
ABIE51_RS13540 -0.5 -3.0 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
ABIE51_RS01370 -0.5 -3.9 glycoside hydrolase family 3 N-terminal domain-containing protein compare
ABIE51_RS11120 -0.5 -1.5 ATP-binding cassette domain-containing protein compare
ABIE51_RS17255 -0.5 -1.2 YkvA family protein compare
ABIE51_RS16015 -0.5 -1.0 aspartate carbamoyltransferase catalytic subunit compare
ABIE51_RS12685 -0.5 -1.5 kynureninase compare
ABIE51_RS00245 -0.5 -2.4 tetratricopeptide repeat protein compare
ABIE51_RS13765 -0.4 -2.8 EAL domain-containing protein compare
ABIE51_RS14575 -0.4 -1.3 DUF423 domain-containing protein compare
ABIE51_RS16375 -0.4 -1.7 NfeD family protein compare
ABIE51_RS00395 -0.4 -3.9 hypothetical protein compare
ABIE51_RS04180 -0.4 -1.3 anthranilate phosphoribosyltransferase compare
ABIE51_RS10840 -0.4 -0.7 ferritin-like domain-containing protein compare
ABIE51_RS16525 -0.4 -1.6 RimK/LysX family protein compare
ABIE51_RS16680 -0.4 -3.0 flagellar hook capping FlgD N-terminal domain-containing protein compare
ABIE51_RS14950 -0.4 -3.0 hypothetical protein compare
ABIE51_RS06495 -0.4 -2.2 YqaA family protein compare
ABIE51_RS06180 -0.4 -1.9 amidophosphoribosyltransferase compare
ABIE51_RS14960 -0.4 -1.8 class I SAM-dependent methyltransferase compare
ABIE51_RS02975 -0.4 -2.7 DmsC/YnfH family molybdoenzyme membrane anchor subunit compare
ABIE51_RS14675 -0.4 -1.2 response regulator compare
ABIE51_RS02525 -0.4 -3.0 DUF1365 domain-containing protein compare
ABIE51_RS14605 -0.4 -2.2 septum site-determining protein MinC compare
ABIE51_RS00160 -0.4 -0.9 hypothetical protein compare
ABIE51_RS11155 -0.4 -2.1 response regulator compare
ABIE51_RS00845 -0.4 -3.0 response regulator compare
ABIE51_RS08940 -0.4 -1.9 peroxiredoxin compare
ABIE51_RS02085 -0.4 -1.8 cell division ATP-binding protein FtsE compare
ABIE51_RS16690 -0.4 -2.0 flagellar basal body rod protein FlgF compare
ABIE51_RS13455 -0.4 -1.1 membrane protein insertion efficiency factor YidD compare
ABIE51_RS04885 -0.4 -1.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
ABIE51_RS16735 -0.4 -1.2 flagellar export chaperone FliS compare
ABIE51_RS13880 -0.4 -2.9 DegQ family serine endoprotease compare
ABIE51_RS04410 -0.4 -2.2 MlaD family protein compare
ABIE51_RS13310 -0.4 -1.4 imidazole glycerol phosphate synthase subunit HisH compare
ABIE51_RS00840 -0.4 -2.2 ATP-binding protein compare
ABIE51_RS10065 -0.4 -2.0 hypothetical protein compare
ABIE51_RS14005 -0.4 -0.8 histidine triad nucleotide-binding protein compare
ABIE51_RS04975 -0.4 -1.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE51_RS15390 -0.4 -0.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE51_RS15695 -0.4 -1.1 DUF1439 domain-containing protein compare
ABIE51_RS06655 -0.4 -1.0 nuclear transport factor 2 family protein compare
ABIE51_RS11975 -0.4 -0.9 response regulator compare
ABIE51_RS13790 -0.4 -2.9 acyl-CoA dehydrogenase family protein compare
ABIE51_RS16665 -0.4 -1.4 chemotaxis protein compare
ABIE51_RS14820 -0.4 -2.1 DUF72 domain-containing protein compare
ABIE51_RS13970 -0.4 -0.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Lysobacter sp. OAE881 in carbon source experiments

For carbon source Ying_Nucleobase14 across organisms